From 3bfa031140e5574c8b85b89f6af115cd7c13a2b5 Mon Sep 17 00:00:00 2001 From: Raymond Lee Date: Wed, 4 Dec 2024 14:48:12 -0800 Subject: [PATCH 1/3] Reinstated glucuronoside catabolic process; #28506 --- src/ontology/go-edit.obo | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index 3aafb45e32..d2d8556c08 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -143128,15 +143128,18 @@ is_obsolete: true [Term] id: GO:0019391 -name: obsolete glucuronoside catabolic process +name: glucuronoside catabolic process namespace: biological_process -def: "OBSOLETE. The chemical reactions and pathways resulting in the breakdown of glucuronosides, compound composed of a hydroxy compound linked to a glucuronate residue." [ISBN:0198506732] -comment: The reason for obsoletion is that this term represents a molecular function. +def: "The chemical reactions and pathways resulting in the breakdown of glucuronosides, compound composed of a hydroxy compound linked to a glucuronate residue." [ISBN:0198506732] +comment: Note that this term was reinstated from obsolete. synonym: "glucuronide catabolic process" EXACT [] synonym: "glucuronide catabolism" EXACT [] synonym: "glucuronoside breakdown" EXACT [] synonym: "glucuronoside catabolism" EXACT [] synonym: "glucuronoside degradation" EXACT [] +xref: MetaCyc:GLUCUROCAT-PWY +is_a: GO:0016139 ! glycoside catabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-annotation/issues/5372" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI is_obsolete: true From 4e5c3cc7f68b13bb7120a4db1861e7d58d5cab8b Mon Sep 17 00:00:00 2001 From: Raymond Lee Date: Wed, 4 Dec 2024 14:54:10 -0800 Subject: [PATCH 2/3] Removed owl deprecated tag; #28506 --- src/ontology/go-edit.obo | 1 - 1 file changed, 1 deletion(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index d2d8556c08..b7b0d24832 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -143141,7 +143141,6 @@ xref: MetaCyc:GLUCUROCAT-PWY is_a: GO:0016139 ! glycoside catabolic process property_value: term_tracker_item "https://github.com/geneontology/go-annotation/issues/5372" xsd:anyURI property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI -is_obsolete: true [Term] id: GO:0019392 From c5fe6fe1967a9bcf607c8254072581599242b422 Mon Sep 17 00:00:00 2001 From: Raymond Lee Date: Fri, 6 Dec 2024 10:45:36 -0800 Subject: [PATCH 3/3] Removed duplicating MetaCyc XREF; #28506 --- src/ontology/go-edit.obo | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index fb0c443a07..e312562828 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -143133,7 +143133,7 @@ is_obsolete: true id: GO:0019391 name: glucuronoside catabolic process namespace: biological_process -def: "The chemical reactions and pathways resulting in the breakdown of glucuronosides, compound composed of a hydroxy compound linked to a glucuronate residue." [ISBN:0198506732] +def: "The chemical reactions and pathways resulting in the breakdown of glucuronosides, compound composed of a hydroxy compound linked to a glucuronate residue." [PMID:28389557] comment: Note that this term was reinstated from obsolete. synonym: "glucuronide catabolic process" EXACT [] synonym: "glucuronide catabolism" EXACT [] @@ -241194,7 +241194,6 @@ def: "The chemical reactions and pathways resulting in the breakdown of D-glucur synonym: "D-glucuronate breakdown" EXACT [] synonym: "D-glucuronate catabolism" EXACT [] synonym: "D-glucuronate degradation" EXACT [] -xref: MetaCyc:GLUCUROCAT-PWY {source="skos:narrowMatch"} xref: MetaCyc:PWY-5525 {source="skos:narrowMatch"} xref: MetaCyc:PWY-6501 {source="skos:narrowMatch"} xref: MetaCyc:PWY-7247 {source="skos:narrowMatch"}