From 63f5d5845c16fb88b43c91535579e0f781ccf1d7 Mon Sep 17 00:00:00 2001 From: Raymond Lee Date: Fri, 6 Dec 2024 15:45:41 -0800 Subject: [PATCH] Obsoleted 10 terms; #28506 --- src/ontology/go-edit.obo | 91 ++++++++++++++++++++++------------------ 1 file changed, 50 insertions(+), 41 deletions(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index e312562828..8f4c189dc1 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -132665,21 +132665,23 @@ is_a: GO:0043687 ! post-translational protein modification [Term] id: GO:0018411 -name: protein glucuronidation +name: obsolete protein glucuronidation namespace: biological_process -def: "The modification of a protein by amino acid glucuronidation." [GOC:ai] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. The modification of a protein by amino acid glucuronidation." [GOC:ai] +comment: The reason for obsoletion is that the term represents a molecular function. synonym: "protein amino acid glucuronidation" EXACT [GOC:bf] -is_a: GO:0036211 ! protein modification process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI +is_obsolete: true [Term] id: GO:0018412 -name: protein O-glucuronidation +name: obsolete protein O-glucuronidation namespace: biological_process -def: "The modification of a protein by glucuronidation on an amino acid oxygen atom." [GOC:mah] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. The modification of a protein by glucuronidation on an amino acid oxygen atom." [GOC:mah] +comment: The reason for obsoletion is that the term represents a molecular function. synonym: "protein amino acid O-glucuronidation" EXACT [GOC:bf] -is_a: GO:0018411 ! protein glucuronidation +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI +is_obsolete: true [Term] id: GO:0018413 @@ -223588,28 +223590,34 @@ creation_date: 2012-05-11T10:57:48Z [Term] id: GO:0036234 -name: deglucuronidation +name: obsolete deglucuronidation namespace: biological_process -def: "The removal of glucuronic acid from a conjugated substrate." [GOC:BHF, GOC:vk, PMID:22294686, PMID:8560473] -is_a: GO:0019585 ! glucuronate metabolic process +def: "OBSOLETE. The removal of glucuronic acid from a conjugated substrate." [GOC:BHF, GOC:vk, PMID:22294686, PMID:8560473] +comment: The reason for obsoletion is that the term represents a molecular function. +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI +is_obsolete: true created_by: bf creation_date: 2012-05-18T04:23:04Z [Term] id: GO:0036235 -name: acyl deglucuronidation +name: obsolete acyl deglucuronidation namespace: biological_process -def: "The removal of glucuronic acid from an acyl-glucuronide." [GOC:BHF, GOC:vk, PMID:22294686] -is_a: GO:0036234 ! deglucuronidation +def: "OBSOLETE. The removal of glucuronic acid from an acyl-glucuronide." [GOC:BHF, GOC:vk, PMID:22294686] +comment: The reason for obsoletion is that the term represents a molecular function. +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI +is_obsolete: true created_by: bf creation_date: 2012-05-18T04:24:11Z [Term] id: GO:0036236 -name: acyl glucuronidation +name: obsolete acyl glucuronidation namespace: biological_process -def: "The modification of an substrate by the conjugation of glucuronic acid to form an acyl-glucuronide (also called an acyl-glucuronoside)." [GOC:BHF, GOC:vk, PMID:12485951, PMID:22294686] -is_a: GO:0052695 ! cellular glucuronidation +def: "OBSOLETE. The modification of an substrate by the conjugation of glucuronic acid to form an acyl-glucuronide (also called an acyl-glucuronoside)." [GOC:BHF, GOC:vk, PMID:12485951, PMID:22294686] +comment: The reason for obsoletion is that the term represents a molecular function. +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI +is_obsolete: true created_by: bf creation_date: 2012-05-18T04:26:25Z @@ -337911,14 +337919,16 @@ is_a: GO:0004497 ! monooxygenase activity [Term] id: GO:0052695 -name: cellular glucuronidation +name: obsolete cellular glucuronidation namespace: biological_process -def: "The modification of an organic chemical by the conjugation of glucuronic acid. The substances resulting from glucuronidation are known as glucuronosides (or glucuronides) and are often much more water-soluble than the non-glucuronic acid-containing precursor." [GOC:BHF] +def: "OBSOLETE. The modification of an organic chemical by the conjugation of glucuronic acid. The substances resulting from glucuronidation are known as glucuronosides (or glucuronides) and are often much more water-soluble than the non-glucuronic acid-containing precursor." [GOC:BHF] +comment: The reason for obsoletion is that the term represents a molecular function. synonym: "cellular glucuronide biosynthesis" EXACT [] synonym: "cellular glucuronide biosynthetic process" EXACT [] synonym: "cellular glucuronoside biosynthesis" EXACT [] synonym: "cellular glucuronoside biosynthetic process" EXACT [] -is_a: GO:0019585 ! glucuronate metabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI +is_obsolete: true creation_date: 2011-07-27T05:28:18Z [Term] @@ -337931,18 +337941,18 @@ synonym: "flavonoid glucuronide biosynthetic process" EXACT [] synonym: "flavonoid glucuronoside biosynthesis" EXACT [] synonym: "flavonoid glucuronoside biosynthetic process" EXACT [] is_a: GO:0009812 ! flavonoid metabolic process -is_a: GO:0052695 ! cellular glucuronidation created_by: ai creation_date: 2011-07-27T05:37:44Z [Term] id: GO:0052697 -name: xenobiotic glucuronidation +name: obsolete xenobiotic glucuronidation namespace: biological_process -def: "The modification of a xenobiotic substance by the conjugation of glucuronic acid. The resultant glucuronosides are often much more water-soluble than the xenobiotic precursor, enabling efficient excretion." [GOC:BHF, PMID:20056724] +def: "OBSOLETE. The modification of a xenobiotic substance by the conjugation of glucuronic acid. The resultant glucuronosides are often much more water-soluble than the xenobiotic precursor, enabling efficient excretion." [GOC:BHF, PMID:20056724] +comment: The reason for obsoletion is that the term represents a molecular function. synonym: "phase II metabolism" NARROW [] -is_a: GO:0006805 ! xenobiotic metabolic process -is_a: GO:0052695 ! cellular glucuronidation +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI +is_obsolete: true created_by: ai creation_date: 2011-07-27T05:37:50Z @@ -597764,47 +597774,46 @@ creation_date: 2011-08-22T01:07:34Z [Term] id: GO:2001029 -name: regulation of cellular glucuronidation +name: obsolete regulation of cellular glucuronidation namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of cellular glucuronidation." [GOC:BHF] +def: "OBSOLETE. Any process that modulates the frequency, rate or extent of cellular glucuronidation." [GOC:BHF] +comment: The reason for obsoletion is that the term represents a molecular function. synonym: "regulation of cellular glucuronide biosynthesis" EXACT [GOC:obol] synonym: "regulation of cellular glucuronide biosynthetic process" EXACT [GOC:obol] synonym: "regulation of cellular glucuronoside biosynthesis" EXACT [GOC:obol] synonym: "regulation of cellular glucuronoside biosynthetic process" EXACT [GOC:obol] -is_a: GO:0006109 ! regulation of carbohydrate metabolic process -is_a: GO:0010565 ! regulation of ketone metabolic process -intersection_of: GO:0065007 ! biological regulation -intersection_of: regulates GO:0052695 ! cellular glucuronidation +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI +is_obsolete: true created_by: rl creation_date: 2011-08-22T01:10:52Z [Term] id: GO:2001030 -name: negative regulation of cellular glucuronidation +name: obsolete negative regulation of cellular glucuronidation namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of cellular glucuronidation." [GOC:BHF] +def: "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of cellular glucuronidation." [GOC:BHF] +comment: The reason for obsoletion is that the term represents a molecular function. synonym: "negative regulation of cellular glucuronide biosynthesis" EXACT [GOC:obol] synonym: "negative regulation of cellular glucuronide biosynthetic process" EXACT [GOC:obol] synonym: "negative regulation of cellular glucuronoside biosynthesis" EXACT [GOC:obol] synonym: "negative regulation of cellular glucuronoside biosynthetic process" EXACT [GOC:obol] -is_a: GO:0045912 ! negative regulation of carbohydrate metabolic process -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0052695 ! cellular glucuronidation +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI +is_obsolete: true created_by: rl creation_date: 2011-08-22T01:10:56Z [Term] id: GO:2001031 -name: positive regulation of cellular glucuronidation +name: obsolete positive regulation of cellular glucuronidation namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of cellular glucuronidation." [GOC:BHF] +def: "OBSOLETE. Any process that activates or increases the frequency, rate or extent of cellular glucuronidation." [GOC:BHF] +comment: The reason for obsoletion is that the term represents a molecular function. synonym: "positive regulation of cellular glucuronide biosynthesis" EXACT [GOC:obol] synonym: "positive regulation of cellular glucuronide biosynthetic process" EXACT [GOC:obol] synonym: "positive regulation of cellular glucuronoside biosynthesis" EXACT [GOC:obol] synonym: "positive regulation of cellular glucuronoside biosynthetic process" EXACT [GOC:obol] -is_a: GO:0045913 ! positive regulation of carbohydrate metabolic process -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0052695 ! cellular glucuronidation +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI +is_obsolete: true created_by: rl creation_date: 2011-08-22T01:10:59Z