Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Consequence	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	t_ref_count	t_alt_count	n_ref_count	n_alt_count	HGVSc	HGVSp	HGVSp_Short	Transcript_ID	RefSeq	Protein_position	Codons	Exon_Number	gnomAD_AF	gnomAD_AFR_AF	gnomAD_AMR_AF	gnomAD_ASJ_AF	gnomAD_EAS_AF	gnomAD_FIN_AF	gnomAD_NFE_AF	gnomAD_OTH_AF	gnomAD_SAS_AF	FILTER	Polyphen_Prediction	Polyphen_Score	SIFT_Prediction	SIFT_Score	SWISSPROT	n_depth	t_depth	Annotation_Status
NPM1	4869	JHU	GRCh37	5	170837526	170837526	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	C	rs191111314		SAGE-1								Unknown	Unknown	Somatic		WXS									ENST00000296930.5:c.847-5T>C		p.X283_splice	ENST00000296930	NM_002520.6	283			0.00406512	0.0527929	0.00226026	0.0	0.0	0.0	9.54198E-5	0.00293083	9.44481E-4									SUCCESS
NPM1	4869	JHU	GRCh37	5	170837513	170837514	+	intron_variant	Intron	INS	-	CTTTTTTTTTTTTT	CTTTTTTTTTTTTT			SAGE-1								Unknown	Unknown	Somatic		WXS									ENST00000296930.5:c.847-18_847-17insCTTTTTTTTTTTTT		p.*283*	ENST00000296930	NM_002520.6																					SUCCESS
NPM1	4869	JHU	GRCh37	5	170837513	170837514	+	intron_variant	Intron	INS	-	CTTTTTTTTTTTTT	CTTTTTTTTTTTTT			SAGE-1								Unknown	Unknown	Somatic		WXS									ENST00000296930.5:c.847-18_847-17insCTTTTTTTTTTTTT		p.*283*	ENST00000296930	NM_002520.6																					SUCCESS
PTEN	5728	JHU	GRCh37	10	89711833	89711834	+	intron_variant	Intron	INS	-	A	A			SAGE-1								Unknown	Unknown	Somatic		WXS									ENST00000371953.3:c.493-42dup		p.*165*	ENST00000371953	NM_000314.4																					SUCCESS
PTEN	5728	JHU	GRCh37	10	89711833	89711834	+	intron_variant	Intron	INS	-	A	A			SAGE-1								Unknown	Unknown	Somatic		WXS									ENST00000371953.3:c.493-42dup		p.*165*	ENST00000371953	NM_000314.4																					SUCCESS
FLT3	2322	JHU	GRCh37	13	28608200	28608201	+	intron_variant	Intron	INS	-	T	T			SAGE-1								Unknown	Unknown	Somatic		WXS									ENST00000241453.7:c.1837+21dup		p.*613*	ENST00000241453	NM_004119.2																					SUCCESS
FLT3	2322	JHU	GRCh37	13	28608200	28608201	+	intron_variant	Intron	INS	-	T	T			SAGE-1								Unknown	Unknown	Somatic		WXS									ENST00000241453.7:c.1837+21dup		p.*613*	ENST00000241453	NM_004119.2																					SUCCESS
STAG2	10735	JHU	GRCh37	X	123195618	123195618	+	splice_region_variant,intron_variant	Splice_Region	SNP	T	T	A	rs766097406		SAGE-1								Unknown	Unknown	Somatic		WXS									ENST00000371144.3:c.1535-3T>A		p.X512_splice	ENST00000371144	NM_001042751.1	512			0.00221775	2.12427E-4	7.0428E-4	0.0099418	0.0	6.77507E-4	0.00347342	0.00208943	0.0									SUCCESS
STAG2	10735	JHU	GRCh37	X	123195618	123195619	+	splice_region_variant,intron_variant	Splice_Region	INS	-	T	T			SAGE-1								Unknown	Unknown	Somatic		WXS									ENST00000371144.3:c.1535-3dup		p.X512_splice	ENST00000371144	NM_001042751.1	512																				SUCCESS
STAG2	10735	JHU	GRCh37	X	123195618	123195619	+	splice_region_variant,intron_variant	Splice_Region	INS	-	T	T			SAGE-1								Unknown	Unknown	Somatic		WXS									ENST00000371144.3:c.1535-3dup		p.X512_splice	ENST00000371144	NM_001042751.1	512																				SUCCESS