Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer HGVSp_Short t_ref_count t_alt_count n_ref_count n_alt_count Protein_position Codons SWISSPROT RefSeq t_depth n_depth FILTER gnomAD_AF gnomAD_AFR_AF gnomAD_AMR_AF gnomAD_ASJ_AF gnomAD_EAS_AF gnomAD_FIN_AF gnomAD_NFE_AF gnomAD_OTH_AF gnomAD_SAS_AF ALK SAGE GRCh37 2 29455255 29455268 + Frame_Shift_Del DEL CGTAGGCCCTGCCA CGTAGGCCCTGCCA G GENIE-SAGE-1-1 Unknown Unknown Somatic WXS APC SAGE GRCh37 5 112175599 112175601 + In_Frame_Del DEL GTA GTA TT GENIE-SAGE-1-1 Unknown Unknown Somatic WXS ATRX SAGE GRCh37 X 76891550 76891552 + In_Frame_Del DEL TAC TAC AG GENIE-SAGE-1-1 Unknown Unknown Somatic WXS BAP1 SAGE GRCh37 3 52440278 52440280 + In_Frame_Del DEL GAG GAG AA GENIE-SAGE-1-1 Unknown Unknown Somatic WXS BRAF SAGE GRCh37 7 140453126 140453138 + Frame_Shift_Del DEL ATCGAGATTTCAC ATCGAGATTTCAC T GENIE-SAGE-1-1 Unknown Unknown Somatic WXS CHD4 SAGE GRCh37 12 6691415 6691417 + In_Frame_Del DEL ACA ACA CT GENIE-SAGE-1-1 Unknown Unknown Somatic WXS CREBBP SAGE GRCh37 16 3778442 3778453 + In_Frame_Del DEL GCTGCTGCTGCT GCTGCTGCTGCT CA GENIE-SAGE-1-1 Unknown Unknown Somatic WXS CSF1R SAGE GRCh37 5 149441391 149441409 + Frame_Shift_Del DEL CAGCGGACCTGGTACTTGG CAGCGGACCTGGTACTTGG A GENIE-SAGE-1-1 Unknown Unknown Somatic WXS FGFR3 SAGE GRCh37 4 1807982 1807983 + Missense_Mutation DNP GG GG AA GENIE-SAGE-1-1 Unknown Unknown Somatic WXS GNAS SAGE GRCh37 20 57480494 57480505 + In_Frame_Del DEL ACGAACGCTCCA ACGAACGCTCCA CC GENIE-SAGE-1-1 Unknown Unknown Somatic WXS KMT2A SAGE GRCh37 11 118375088 118375093 + In_Frame_Del DEL ATAATA ATAATA T GENIE-SAGE-1-1 Unknown Unknown Somatic WXS MAP3K1 SAGE GRCh37 5 56177633 56177636 + Frame_Shift_Del DEL ATCC ATCC T GENIE-SAGE-1-1 Unknown Unknown Somatic WXS NF1 SAGE GRCh37 17 29553537 29553539 + In_Frame_Del DEL GTG GTG TT GENIE-SAGE-1-1 Unknown Unknown Somatic WXS NF1 SAGE GRCh37 17 29676152 29676155 + Frame_Shift_Del DEL CCTT CCTT TCT GENIE-SAGE-1-1 Unknown Unknown Somatic WXS NFKBIA SAGE GRCh37 14 35873811 35873830 + Frame_Shift_Del DEL TCCATGGCCCACTCCTGGGG TCCATGGCCCACTCCTGGGG C GENIE-SAGE-1-1 Unknown Unknown Somatic WXS NSD1 SAGE GRCh37 5 176562991 176562994 + Frame_Shift_Del DEL TACC TACC CAC GENIE-SAGE-1-1 Unknown Unknown Somatic WXS PIK3CG SAGE GRCh37 7 106513160 106513162 + In_Frame_Del DEL ACA ACA CC GENIE-SAGE-1-1 Unknown Unknown Somatic WXS PIK3R1 SAGE GRCh37 5 67589629 67589644 + Frame_Shift_Del DEL ATGATAGATTATATGA ATGATAGATTATATGA TTGA GENIE-SAGE-1-1 Unknown Unknown Somatic WXS PRDM1 SAGE GRCh37 6 106553288 106553290 + In_Frame_Del DEL TAC TAC AA GENIE-SAGE-1-1 Unknown Unknown Somatic WXS PTCH1 SAGE GRCh37 9 98224199 98224212 + Frame_Shift_Del DEL GACTCCATCGTCTG GACTCCATCGTCTG A GENIE-SAGE-1-1 Unknown Unknown Somatic WXS SMAD4 SAGE GRCh37 18 48604785 48604791 + Frame_Shift_Del DEL CTAGACG CTAGACG T GENIE-SAGE-1-1 Unknown Unknown Somatic WXS SMAD4 SAGE GRCh37 18 48584602 48584608 + Frame_Shift_Del DEL TACTTAC TACTTAC AAGTA GENIE-SAGE-1-1 Unknown Unknown Somatic WXS SMAD4 SAGE GRCh37 18 48604797 48604805 + In_Frame_Del DEL CTTCATACC CTTCATACC TGAAG GENIE-SAGE-1-1 Unknown Unknown Somatic WXS TERT SAGE GRCh37 5 1295227 1295228 + Missense_Mutation DNP GG GG AA GENIE-SAGE-1-1 Unknown Unknown Somatic WXS WT1 SAGE GRCh37 11 32417838 32417853 + Frame_Shift_Del DEL CAGCTTAAAATATCTC CAGCTTAAAATATCTC AAT GENIE-SAGE-1-1 Unknown Unknown Somatic WXS ZNF217 SAGE GRCh37 20 52198884 52198887 + Frame_Shift_Del DEL GCAC GCAC CAG GENIE-SAGE-1-1 Unknown Unknown Somatic WXS