From 4366c134578f29f483974573fe07c9f4a1f9b0e5 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Tue, 9 Sep 2025 16:33:51 +0000
Subject: [PATCH 1/2] Initial plan


From 2a4630c7f1bf4065a8530f7b748d798b51c889f6 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Tue, 9 Sep 2025 16:53:28 +0000
Subject: [PATCH 2/2] Remove --intra-layer-parallelism flag from CodeQL CLI
 commands

Co-authored-by: henrymercer <14129055+henrymercer@users.noreply.github.com>
---
 lib/analyze-action-post.js        | 1 -
 lib/analyze-action.js             | 1 -
 lib/autobuild-action.js           | 1 -
 lib/init-action-post.js           | 1 -
 lib/init-action.js                | 1 -
 lib/resolve-environment-action.js | 1 -
 lib/upload-lib.js                 | 1 -
 lib/upload-sarif-action.js        | 1 -
 src/codeql.test.ts                | 2 +-
 src/codeql.ts                     | 1 -
 10 files changed, 1 insertion(+), 10 deletions(-)

diff --git a/lib/analyze-action-post.js b/lib/analyze-action-post.js
index f6a82b7318..807ac63a78 100644
--- a/lib/analyze-action-post.js
+++ b/lib/analyze-action-post.js
@@ -118251,7 +118251,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
diff --git a/lib/analyze-action.js b/lib/analyze-action.js
index fb95211a34..59c83e477b 100644
--- a/lib/analyze-action.js
+++ b/lib/analyze-action.js
@@ -92814,7 +92814,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
diff --git a/lib/autobuild-action.js b/lib/autobuild-action.js
index a885e91074..3d47b48127 100644
--- a/lib/autobuild-action.js
+++ b/lib/autobuild-action.js
@@ -79286,7 +79286,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
diff --git a/lib/init-action-post.js b/lib/init-action-post.js
index cb65274e00..8f90107276 100644
--- a/lib/init-action-post.js
+++ b/lib/init-action-post.js
@@ -130724,7 +130724,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
diff --git a/lib/init-action.js b/lib/init-action.js
index d260675718..0f8fc3ec9a 100644
--- a/lib/init-action.js
+++ b/lib/init-action.js
@@ -89408,7 +89408,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
diff --git a/lib/resolve-environment-action.js b/lib/resolve-environment-action.js
index d7a9a4ade6..53101dc2ce 100644
--- a/lib/resolve-environment-action.js
+++ b/lib/resolve-environment-action.js
@@ -78986,7 +78986,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
diff --git a/lib/upload-lib.js b/lib/upload-lib.js
index f18ee06e90..4f8e075ada 100644
--- a/lib/upload-lib.js
+++ b/lib/upload-lib.js
@@ -90552,7 +90552,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
diff --git a/lib/upload-sarif-action.js b/lib/upload-sarif-action.js
index 9358462484..fda852a528 100644
--- a/lib/upload-sarif-action.js
+++ b/lib/upload-sarif-action.js
@@ -91253,7 +91253,6 @@ ${output}`
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024",
         // Try to leave at least 1GB free
         "-v",
diff --git a/src/codeql.test.ts b/src/codeql.test.ts
index ece6ab878a..36775f6530 100644
--- a/src/codeql.test.ts
+++ b/src/codeql.test.ts
@@ -953,7 +953,7 @@ test("runTool recognizes fatal internal errors", async (t) => {
       await codeqlObject.databaseRunQueries(stubConfig.dbLocation, []),
     {
       instanceOf: CliError,
-      message: `Encountered a fatal error while running "codeql-for-testing database run-queries  --intra-layer-parallelism --min-disk-free=1024 -v". Exit code was 1 and error was: Oops! A fatal internal error occurred. Details:
+      message: `Encountered a fatal error while running "codeql-for-testing database run-queries  --min-disk-free=1024 -v". Exit code was 1 and error was: Oops! A fatal internal error occurred. Details:
     com.semmle.util.exception.CatastrophicError: An error occurred while evaluating ControlFlowGraph::ControlFlow::Root.isRootOf/1#dispred#f610e6ed/2@86282cc8
     Severe disk cache trouble (corruption or out of space) at /home/runner/work/_temp/codeql_databases/go/db-go/default/cache/pages/28/33.pack: Failed to write item to disk. See the logs for more details.`,
     },
diff --git a/src/codeql.ts b/src/codeql.ts
index 567eb80875..35c3cc625f 100644
--- a/src/codeql.ts
+++ b/src/codeql.ts
@@ -789,7 +789,6 @@ export async function getCodeQLForCmd(
         "run-queries",
         ...flags,
         databasePath,
-        "--intra-layer-parallelism",
         "--min-disk-free=1024", // Try to leave at least 1GB free
         "-v",
         ...queries,