Lambert update #6
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Port UPP on NOAA R&D machine HERA. (#4)
* update modules for jet * update for regular lat-lon grids to FV3 output change on coordinate
* 1)Update with g2tmp/1.6.0; 2)Sync new routines into makefile for building post library. * Switch to intel/16.3.210 for Cray. * Upgrade with g2tmpl v1.6.0 on Hera.
* Remove unnessrary print outs in UPP code. * Reduce more print outs.
BinLiu-NOAA
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Jan 12, 2023
* Changes to support 2D Decomposition shape changes. Full I dimension remains in all arrays bu t SURFCE is altered to use isx:iex bounds which are equivalent to IM which is equivalent to 1:IM * test of commit only added one comment to PROCESS.f * comment test 2 * Added more routines to 2D decomposition * Changed isx and iex to ISTA and IEND in listed routines. ISTA had prior use in MDL2P.f and that needed changing. IEND had prior use in PARA_CONFIG, changed to IENDJ in PARA_CONFIG2 where needed PARA_CONFIG did not need changing * test commit of new base into clone * repair of a bunch of changed routines somehow corrupted by a merge 5/3/2021 * fixed 5/25 problem * added ctlblk change to support ista and iend partial I dimensons * added para_range2 to PARA_RANGE.f to support 2D decomposition * Modified MPI_FIRST.f to support a 2D decomposition but the actual numbers used remain the 1D special case and the changes just add two more indices for start and end I domains and logic to convert scatter counts and displacements to the product of the I and J subdomain sizes rather than I full domain x J subdomain. * Added support for halo settings of 2D boundaries i.e ista_2l to match the 1D analogs long present in the source 6/1/2021 * Added definitions for ista_2u, and ista_2u in MPI_FIRST.f * Reshaped arrays in MDL2FLD.f to support 2D decomposition. Modified TWO (only) loops to try thie * Remove TIMEF.f. * 20210702 JesseMeng modify MPI_FIRST.f MDLFLD.f for 2D decomposition * 20210706 BoCui modify INITPOST_GFS_NETCDF_PARA.f * 20210707 JesseMeng modified grib2_module.f for 2d decomposition * test version INITPOST_GFS_NETCDF_PARA.f * test version INITPOST_GFS_NETCDF_PARA.f and MPI_FIRST.f * 20210713 BoCui test INITPOST_GFS_NETCDF_PARA.f, MPI_FIRST.f and ALLOCATE_ALL.f * 20210713 BoCui test INITPOST_GFS_NETCDF_PARA.f, MPI_FIRST.f and ALLOCATE_ALL.f * 20210719 BoCui Modified CLDRAD.f for 2d decomposition * 20210816 Jesse Meng commit George's EXCH update for 1 layer 2D halos transforming * 20210816 Jesse Meng remove ifcore in EXCH * 20210903 Bo Cui update ALLOCATE_ALL.f after new merge from 'upstream/develop' * 20210903 Bo Cui Added new routines to 2D decomposition * 20210903 Jesse Meng fixed the ieql allocation bug in ALLOCATE_ALL.f * 20210904 Bo Cui fixed CLDRAD.f * 20210913 Jesse Meng commit progress of 2D decomposition * 20210917 Bo Cui add new routines to 2D decomposition * 20210917 Jesse Meng remove 4 legacy files * 20210917 Jesse Meng remove legacy code SLP_NMM EXCH2 * 20210917 Jesse Meng remove legacy code INITPOST_GFS_SIGIO.f INITPOST_GFS_NEMS.f * 20210917 Jesse Meng add INITPOST_GFS_NEMS.f back to avoid compiling error. * 20210930 Jesse Meng add George's itag/numx entry and progress on 2D decompose * 20211015 Jesse Meng progress on 2D DECOMPOSITION * 20211017 Bo Cui add new subroutines to UPP 2D decomposition * 20211026 Jesse Meng commit progress in 2D DECOMPOSITION * 20211026 Jesse Meng fix INITPOST_GFS_NETCDF_PARA.f for 2D DECOMPOSITION * 20211026 Jesse Meng update SURFCE.f for 2D DECOMPOSITION * 20211103 Jesse Meng commit progress of 2D DECOMPOSITION * 20211106 Bo Cui commit progress of 2D decomposition * 20211109 Jesse Meng updates for 2D DECOMPOSITION * 20211110 Jesse Meng updates in 2D DECOMPOSITION * 20211112 Jesse Meng updates for 2D DECOMPOSITION * 20211115 Jesse Meng updates for 2D DECOMPOSITION * 20211119 Jesse Meng updates for 2D DECOMPOSITION * 20211201 Jesse Meng move CALVOR to UPP_PHYSICS module; implement fullpole in MPI_FIRST * 20211202 Jesse Meng minor update of MPI_FIRST using mpi_allgatherv * 20211203 Jesse Meng implement fullpole in MDL2THANDPV and CALDIV * 20211207 Jesse Meng update MISCLN.f SURFCE.f * 20211208 Jesse Meng add parm/hafs_nosat files * 20211213 Bo Cui updates for 2D decomposition * 20211213 Jesse Meng update the merged 'upstream/develop' and 'post_2d_decomp' branch to 2d_decomp style * 20211215 Jesse Meng use i=0:im+1 for GFS in MPI_FIRST and EXCH * 20211216 Jesse Meng minor update UPP_PHYSICS for i=0:im+1 expansion * 20220104 Jesse Meng add George's minor fix in EXHC.f * 20220118 Jesse Meng commit George's cleaned up code. * 20220203 Jesse Meng - update MAPSSLP.f to be consistent with develop branch. * 20220222 Jesse Meng add checkcoords flag in EXCH.f to move around George's debug code. * 20220302 Jesse Meng Restrict computation from undefined grids * 20220304 Bo Cui Add a reset of numx=1 if remainder of num_procs/numx is not 0 * 20220310 Jesse Meng Add a reset of numx=1 if(numx>num_procs/2) * 20220322 Jesse Meng mpi_allgatherv change communicator to MPI_COMM_COMP * 20220328 Jesse Meng bug fix for passing 2d subarrays between subroutines * 20220328 Jesse Meng minor fix for CLDRAD call BOUND variable array size * 20220330 Jesse Meng fix cloud cover variabes full field collection in 2d decomp * 20220401 Jesse Meng minor fix for CALMCVG.f and update CALUPDHEL.f with develop * 20220414 BoCui sync and merge UPP/develop into post_2d_decomp (#7) * Added lambert conformal projection for FV3SAR and handled composite reflectivity correctly (NOAA-EMC#14) (#2) * exec is selectable for executable directory (NOAA-EMC#448) * Doxygen for CALGUST (NOAA-EMC#451) * Doxygen for CALDRG.f * This is part of Issue NOAA-EMC#392 Fixes the doxygen warnings in CALGUST.f Please review this subroutine. Thank you. * The fix in CALUPDHEL.f (NOAA-EMC#458) * Modify CALUPDHEL.f for restricting undefined grids in computation. * Update VERSION to 10.0.12. * Bug fix for SLLEVEL bound issue when not RUC LSM (NOAA-EMC#463) Co-authored-by: Tracy <tracy.hertneky@noaa.gov> * Doxygen caldrg caldwcp calgust refinement (NOAA-EMC#464) * Further refinement to the tables and logs. * Further refinement to the tables and logs. (NOAA-EMC#455) * This is part of Issue NOAA-EMC#392 (NOAA-EMC#460) Fixes the doxygen warnings in CALHEL.f CALHEL2.f CALHEL3.f Please review this subroutine. Thank you. * Unify global and regional FV3 read interfaces (NOAA-EMC#453) * Unify the interfaces for reading FV3 outputs in netcdf. * Remove interface INITPOST_GFS_NETCDF_PARA. * Remove INITPOST_GFS_NETCDF.f. * Remove the capability of serial netcdf reading FV3 outputs. * Correct reading rswinc. * Remove duplication in CLDRAD.f. * Remove duplicated avgalbedo reading * Add changes for reading pwat from model. * Clean up commented out code * Clean up duplicated lines * Add ability to compile script to use non-intel compilers; add Cheyenne modulefiles for gnu and intel (NOAA-EMC#468) * Add cheyenne modulefile * Intel 19 --> 2021 * Add ability to specify compiler; move all existing modulefiles to ${name}_intel since they are all for intel compilers; add "cheyenne_gnu" modulefile * Revert move of intel modulefiles; now the implicit default for a modulefile is intel, only gnu and other compilers will have the compiler name appended to the modulefile * Allow for lua modulefiles with ".lua" appended * This is part of Issue NOAA-EMC#392 (NOAA-EMC#465) Fixes the doxygen warnings in CALLCL.f CALMCVG.f CALMICT.f * This is part of Issue NOAA-EMC#392 (NOAA-EMC#466) Fixes the doxygen warnings in CALPBL.f CALPBLREGIME.f CALPOT.f CALPW.f. * Doxygen in CALRAD_WCLOUD_newcrtm.f CALRCH.f CALSTRM.f CALTAU.f CALTHTE.f CALUPDHEL.f. (NOAA-EMC#467) * This is part of Issue NOAA-EMC#392. Fixes the doxygen warnings in CALRAD_WCLOUD_newcrtm.f CALRCH.f CALSTRM.f CALTAU.f CALTHTE.f CALUPDHEL.f. * Fixed typo. * Update to PR NOAA-EMC#458. * Doxygen in CALVOR.f, CALWXT_BOURG.f, CLDRAD.f, COLLECT.f, COLLECT_LOC.f, DEALLOCATE.f, and DEALLOCATE.f (NOAA-EMC#469) * This is part of Issue NOAA-EMC#392. Fixes the doxygen warnings in CALVOR.f, CALWXT_BOURG.f, CLDRAD.f, COLLECT.f, COLLECT_LOC.f, DEALLOCATE.f, and DEALLOCATE.f. * Fixed minor bug in CALVOR.f. * Update to PR#453. * More updates. * 20220411 Bo Cui 2D decompositio CALVOR.f and INITPOST_NETCDF.f * 20220411 Bo Cui update doxgen and global and regional FV3 read interface * 20220414 Bo Cui: remove read_netcdf_2d_scatter and read_netcdf_3d_scatter from INITPOST_NETCDF.f * 20220415 Bo Cui delete CALVOR.f, add exch of gdlon in INITPOST_NETCDF.f * 20220421 Bo Cui Doxygen in UPP_PHYSICS.f,add restriction run 2D decomp only for GFS/FV3R in WRFPOST.f Co-authored-by: WenMeng-NOAA <48260754+WenMeng-NOAA@users.noreply.github.com> Co-authored-by: Wen Meng <wen.meng@noaa.gov> Co-authored-by: Chan-Hoo.Jeon-NOAA <60152248+chan-hoo@users.noreply.github.com> Co-authored-by: kayeekayee <kayee.wong@noaa.gov> Co-authored-by: Tracy Hertneky <39317287+hertneky@users.noreply.github.com> Co-authored-by: Tracy <tracy.hertneky@noaa.gov> Co-authored-by: Michael Kavulich <kavulich@ucar.edu> * 20220502 Bo Cui code cleanup * 20220512 Jesse Meng minor fix for INITPOST_GFS_NEMS_MPIIO.f calling EXCH * 20220525 Jesse Meng minor fix to 2d_decomp syntax * Update VERSION to 11.0.0 * 20220607 Jesse Meng add variable declaration block in PARA_RANGE.f * 20220608 Jesse Meng remove blank spaces in sorc/ncep_post.fd/AllGETHERV_GSD.f * Add 2D decomp overview documentation (#6) * Add 2D decomp overview documentation * Update 2D overview Co-authored-by: George Vandenberghe <George.Vandenberghe@noaa.gov> Co-authored-by: wx15gv <George.Vandenberghe@v71a1.ncep.noaa.gov> Co-authored-by: wx22mj <Jesse.Meng@m71a1.ncep.noaa.gov> Co-authored-by: Bo Cui <Bo.Cui@noaa.gov> Co-authored-by: wx22mj <Jesse.Meng@m71a2.ncep.noaa.gov> Co-authored-by: wx22mj <Jesse.Meng@m72a1.ncep.noaa.gov> Co-authored-by: wx22mj <Jesse.Meng@m71a3.ncep.noaa.gov> Co-authored-by: wx22mj <Jesse.Meng@v71a1.ncep.noaa.gov> Co-authored-by: wx22mj <Jesse.Meng@v72a1.ncep.noaa.gov> Co-authored-by: wx22mj <Jesse.Meng@v71a3.ncep.noaa.gov> Co-authored-by: wx22mj <Jesse.Meng@v71a2.ncep.noaa.gov> Co-authored-by: Jesse.Meng <Jesse.Meng@noaa.gov> Co-authored-by: BoCui-NOAA <53531984+BoCui-NOAA@users.noreply.github.com> Co-authored-by: Chan-Hoo.Jeon-NOAA <60152248+chan-hoo@users.noreply.github.com> Co-authored-by: kayeekayee <kayee.wong@noaa.gov> Co-authored-by: Tracy Hertneky <39317287+hertneky@users.noreply.github.com> Co-authored-by: Tracy <tracy.hertneky@noaa.gov> Co-authored-by: Michael Kavulich <kavulich@ucar.edu> Co-authored-by: Jesse Meng <jmeng@Orion-login-4.HPC.MsState.Edu> Co-authored-by: Kate Fossell <fossell@ucar.edu>
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update for jet and write component coordinate change; sync with the latest develop branch