SAM Validation Error

[kcornick]

I ran the following line...

java -jar /Users/cornck/QoRTs.jar QC PT10N_pseudoalignments.bam /Users/cornck/Homo_sapiens.GRCh38.92.gtf.gz /Shared/darbro-cytogenetics/Kendall/PT10N_QC

PT10N_pseudoalignments.bam <= the bam file generated by Kallisto --genomebam [did not sort, because already sorted]

/Users/cornck/Homo_sapiens.GRCh38.92.gtf.gz <= location to GTF file, downloaded from ensembl

/Shared/darbro-cytogenetics/Kendall/PT10N_QC <= location of outputs

I am uncertain as to how I interpret this error I received. Any help in making sense of this is greatly appreciated.