diff --git a/archetypes/helidon/src/main/archetype/common/common.xml b/archetypes/helidon/src/main/archetype/common/common.xml
index 610b30ede52..8912681717c 100644
--- a/archetypes/helidon/src/main/archetype/common/common.xml
+++ b/archetypes/helidon/src/main/archetype/common/common.xml
@@ -49,7 +49,7 @@
             <includes>
                 <include>.helidon.mustache</include>
                 <include>README.md.mustache</include>
-                <include>src/main/java/**/*.java.mustache</include>
+                <include>src/main/java/**/Main.java.mustache</include>
             </includes>
         </templates>
         <model>
diff --git a/archetypes/helidon/src/main/archetype/common/media.xml b/archetypes/helidon/src/main/archetype/common/media.xml
index 3a2590618e7..781b501fed4 100644
--- a/archetypes/helidon/src/main/archetype/common/media.xml
+++ b/archetypes/helidon/src/main/archetype/common/media.xml
@@ -22,7 +22,8 @@
 
     <step name="Media Support" optional="true">
         <variables>
-            <text path="media.default-json-lib">jsonb</text>
+            <text path="media.default-json-lib" if="${flavor} == 'mp'">jsonb</text>
+            <text path="media.default-json-lib" if="${flavor} == 'se'">jsonp</text>
         </variables>
         <inputs>
             <!-- TODO https://github.com/oracle/helidon-build-tools/issues/699 -->
diff --git a/archetypes/helidon/src/main/archetype/common/packaging.xml b/archetypes/helidon/src/main/archetype/common/packaging.xml
index 4152ca47750..e81d8e2d93b 100644
--- a/archetypes/helidon/src/main/archetype/common/packaging.xml
+++ b/archetypes/helidon/src/main/archetype/common/packaging.xml
@@ -92,6 +92,20 @@ kubectl delete -f app.yaml
                     </templates>
                 </output>
             </boolean>
+            <boolean id="jpms"
+                     name="Module support (JPMS)"
+                     description="Add a module-info to your project"
+                     default="false"
+                     optional="true">
+                <output>
+                    <templates engine="mustache" transformations="mustache,packaged">
+                        <directory>files</directory>
+                        <includes>
+                            <include>src/main/java/**/module-info.java.mustache</include>
+                        </includes>
+                    </templates>
+                </output>
+            </boolean>
         </inputs>
     </step>
 </archetype-script>
diff --git a/archetypes/helidon/src/main/archetype/common/presets.xml b/archetypes/helidon/src/main/archetype/common/presets.xml
index 7f06f24d161..af89c930a54 100644
--- a/archetypes/helidon/src/main/archetype/common/presets.xml
+++ b/archetypes/helidon/src/main/archetype/common/presets.xml
@@ -37,5 +37,6 @@
         <boolean path="docker.jlink-image">true</boolean>
         <boolean path="k8s">true</boolean>
         <boolean path="v8o">false</boolean>
+        <boolean path="jpms">false</boolean>
     </presets>
 </archetype-script>
diff --git a/archetypes/helidon/src/main/archetype/flavor.xml b/archetypes/helidon/src/main/archetype/flavor.xml
index c48bd2cd324..5af21a7fa51 100644
--- a/archetypes/helidon/src/main/archetype/flavor.xml
+++ b/archetypes/helidon/src/main/archetype/flavor.xml
@@ -31,16 +31,16 @@
                   default="se"
                   global="true"
                   optional="true">
-                <option value="mp"
-                        name="Helidon MP"
-                        description="Declarative, MicroProfile compliant">
-                    <exec src="mp/mp.xml"/>
-                </option>
                 <option value="se"
                         name="Helidon SE"
                         description="WebSever based on Virtual Threads">
                     <exec src="se/se.xml"/>
                 </option>
+                <option value="mp"
+                        name="Helidon MP"
+                        description="Declarative, MicroProfile compliant">
+                    <exec src="mp/mp.xml"/>
+                </option>
             </enum>
         </inputs>
     </step>
diff --git a/archetypes/helidon/src/main/archetype/mp/oci/oci-mp.xml b/archetypes/helidon/src/main/archetype/mp/oci/oci-mp.xml
index 9dcfa73d150..5b6439ec6e7 100644
--- a/archetypes/helidon/src/main/archetype/mp/oci/oci-mp.xml
+++ b/archetypes/helidon/src/main/archetype/mp/oci/oci-mp.xml
@@ -45,6 +45,7 @@ This will mount `~/.oci` as a volume in the running docker container.
         <boolean path="docker.jlink-image">false</boolean>
         <boolean path="k8s">true</boolean>
         <boolean path="v8o">false</boolean>
+        <boolean path="jpms">false</boolean>
     </presets>
     <call method="pre-processed-models"/>
     <exec src="/common/common.xml"/>
diff --git a/archetypes/helidon/src/main/archetype/se/custom/custom-se.xml b/archetypes/helidon/src/main/archetype/se/custom/custom-se.xml
index e419d2a8dda..076f59625f7 100644
--- a/archetypes/helidon/src/main/archetype/se/custom/custom-se.xml
+++ b/archetypes/helidon/src/main/archetype/se/custom/custom-se.xml
@@ -26,9 +26,9 @@
     <source src="/se/custom/database.xml"/>
     <source src="/common/extra.xml"/>
     <source src="/se/custom/extra.xml"/>
-    <exec src="/common/packaging.xml"/>
     <source src="/common/observability.xml"/>
     <source src="/se/custom/observability.xml"/>
+    <exec src="/common/packaging.xml"/>
 
     <output>
         <file source="files/src/main/resources/WEB/index.html" target="src/main/resources/WEB/index.html" if="${media} contains 'multipart'"/>
diff --git a/archetypes/helidon/src/main/archetype/se/quickstart/quickstart-se.xml b/archetypes/helidon/src/main/archetype/se/quickstart/quickstart-se.xml
index 6d4783ee72a..477764ea59f 100644
--- a/archetypes/helidon/src/main/archetype/se/quickstart/quickstart-se.xml
+++ b/archetypes/helidon/src/main/archetype/se/quickstart/quickstart-se.xml
@@ -19,25 +19,9 @@
 <archetype-script xmlns="https://helidon.io/archetype/2.0"
                   xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
                   xsi:schemaLocation="https://helidon.io/archetype/2.0 https://helidon.io/xsd/archetype-2.0.xsd">
+    <exec src="/common/presets.xml"/>
     <presets>
-        <list path="media">
-            <value>json</value>
-        </list>
         <boolean path="db">false</boolean>
-        <enum path="media.json-lib">jsonp</enum>
-        <boolean path="metrics">true</boolean>
-        <enum path="metrics.provider">microprofile</enum>
-        <boolean path="metrics.builtin">true</boolean>
-        <boolean path="health">true</boolean>
-        <boolean path="health.builtin">true</boolean>
-        <boolean path="tracing">false</boolean>
-        <list path="extra"/>
-        <boolean path="security">false</boolean>
-        <boolean path="docker">true</boolean>
-        <boolean path="docker.native-image">true</boolean>
-        <boolean path="docker.jlink-image">true</boolean>
-        <boolean path="k8s">false</boolean>
-        <boolean path="v8o">false</boolean>
     </presets>
     <exec src="/se/custom/custom-se.xml"/>
     <source src="/common/sources.xml"/>
diff --git a/archetypes/helidon/src/main/archetype/se/se.xml b/archetypes/helidon/src/main/archetype/se/se.xml
index 2a67344554e..bd3dc5b22f8 100644
--- a/archetypes/helidon/src/main/archetype/se/se.xml
+++ b/archetypes/helidon/src/main/archetype/se/se.xml
@@ -32,16 +32,16 @@
                         description="Sample Helidon Nima project that includes multiple REST operations">
                     <exec src="quickstart/quickstart-se.xml"/>
                 </option>
-                <option value="custom"
-                        name="Custom"
-                        description="Custom Helidon SE project">
-                    <exec src="custom/custom-se.xml"/>
-                </option>
                 <option value="database"
                         name="Database"
                         description="Helidon SE application that uses a database with JPA">
                     <exec src="database/database-se.xml"/>
                 </option>
+                <option value="custom"
+                        name="Custom"
+                        description="Custom Helidon SE project">
+                    <exec src="custom/custom-se.xml"/>
+                </option>
             </enum>
         </inputs>
     </step>