Error of installing WASP in offline installation of moose

[bylore]

Hi, I am installing moose by offline way.
When i come the the step (the previous steps go well)

./update_and_rebuild_wasp.sh --skip-submodule-update

I get the following error

CMake Error: Unknown argument --skip-submodule-update
CMake Error: Run 'cmake --help' for all supported options.
Error: configure step for WASP failed to complete successfully

And at this time, my dir */moose/framework/contrib/wasp has nothing but an empty /build.

Could you please give me some advice? Thanks!

[GiudGiud]

@brandonlangley do you have offline installation instructions for wasp?
@bylore you ll need to download wasp online then make that available in the offline environment

[bylore]

I find the installation instructions for wasp in
https://code.ornl.gov/neams-workbench/wasp/-/tree/master?ref_type=heads#requirements

But i can't access https://code-int.ornl.gov/profile/keys
for the first step Save the ssh-key in [code-int.ornl.gov](https://code-int.ornl.gov/profile/keys).

[bylore]

Online HPC-Cluster way works for me. Thank you.

[ljeft]

HELLO
I have the same error as you,and I plan to install moose offline on centos.Your link I can not open,.I want to know how you solve.

[bylore]

@ljeft you can copy and paste the above link in your browser. I give up the offline installation and choose online way
https://mooseframework.inl.gov/getting_started/installation/hpc_install_moose.html

[brandonlangley]

@bylore @ljeft -

Running ./scripts/update_and_rebuild_wasp.sh from the MOOSE root will configure and build the shared libs for MOOSE.

If necessary, you can clone WASP and its submodules yourself then configure, build, and install the components for MOOSE.

Run git submodule status | grep wasp from the MOOSE source to get the WASP SHA compatible for your MOOSE, then:

git clone https://code.ornl.gov/neams-workbench/wasp.git path/to/wasp/source
cd path/to/wasp/source
git reset --hard SHA-FROM-STEP-ABOVE
git submodule update --init

I'm not very familiar with CentOS, but to build WASP yourself the CMake configure before compiling will be something like:

cmake \
  -D CMAKE_BUILD_TYPE:STRING=RELEASE \
  -D wasp_ENABLE_ALL_PACKAGES:BOOL=OFF \
  -D wasp_ENABLE_wasphit:BOOL=ON \
  -D wasp_ENABLE_wasplsp:BOOL=ON \
  -D wasp_ENABLE_waspsiren:BOOL=ON \
  -D wasp_ENABLE_testframework:BOOL=OFF \
  -D wasp_ENABLE_TESTS:BOOL=OFF \
  -D BUILD_SHARED_LIBS:BOOL=ON \
  -D DISABLE_HIT_TYPE_PROMOTION:BOOL=ON \
  -D CMAKE_INSTALL_PREFIX=path/to/wasp/install \
  path/to/wasp/source

After configuring with the above options, you can run make install to install the WASP components needed for MOOSE.

When building MOOSE, you'll need to make sure the WASP_DIR environment variable is set to your path/to/wasp/install.

That $WASP_DIR install directory should contain at least the include and lib subdirectories.

[ljeft]

@brandonlangley
I followed your advice and manually cloned WASP and its submodules. Then I followed the offline installation tutorial, uploaded the package to the system where I wanted to install moose, ran./scripts/update_and_rebuild_wasp.sh, and still got the same error.cmake version

CMake Error: The source directory "/public/home/ghfund3_a47/projects/moose/framework/contrib/wasp/build/--skip-submodule-update" does not exist.
Specify --help for usage, or press the help button on the CMake GUI.
Error: configure step for WASP failed to complete successfully

[GiudGiud]

If you want to try you can probably make it work by changing every

#include<filesystem>

to

#include<experimental/filesystem>

but you're on your own for debugging any other incompatibility

[ljeft]

I switched the gcc version to 9.3 and still got an error

make: *** [/public/home/ghfund3_a47/projects/moose/framework/build.mk:150: /public/home/ghfund3_a47/projects/moose/framework/build/unity_src/controls_Unity.x86_64-pc-linux-gnu.opt.lo] Error 1
/public/home/ghfund3_a47/gcc9.3/include/c++/9.3.0/bits/fs_path.h: In instantiation of 'static std::basic_string<_CharT, _Traits, _Alloc> std::filesystem::path::_S_str_convert(const string_type&, const _Allocator&) [with _CharT = char16_t; _Traits = std::char_traits<char16_t>; _Allocator = std::allocator<char16_t>; std::filesystem::path::string_type = std::basic_string]':
/public/home/ghfund3_a47/gcc9.3/include/c++/9.3.0/bits/fs_path.h:1016:40: required from 'std::basic_string<_CharT, _Traits, _Alloc> std::filesystem::path::string(const _Allocator&) const [with _CharT = char16_t; _Traits = std::char_traits<char16_t>; _Allocator = std::allocator<char16_t>]'
/public/home/ghfund3_a47/gcc9.3/include/c++/9.3.0/bits/fs_path.h:1052:53: required from here
/public/home/ghfund3_a47/gcc9.3/include/c++/9.3.0/bits/fs_path.h:997:28: error: '__str_codecvt_in_all' was not declared in this scope
/public/home/ghfund3_a47/gcc9.3/include/c++/9.3.0/bits/fs_path.h: In instantiation of 'static std::basic_string<_CharT, _Traits, _Alloc> std::filesystem::path::_S_str_convert(const string_type&, const _Allocator&) [with _CharT = char32_t; _Traits = std::char_traits<char32_t>; _Allocator = std::allocator<char32_t>; std::filesystem::path::string_type = std::basic_string]':
/public/home/ghfund3_a47/gcc9.3/include/c++/9.3.0/bits/fs_path.h:1016:40: required from 'std::basic_string<_CharT, _Traits, _Alloc> std::filesystem::path::string(const _Allocator&) const [with _CharT = char32_t; _Traits = std::char_traits<char32_t>; _Allocator = std::allocator<char32_t>]'
/public/home/ghfund3_a47/gcc9.3/include/c++/9.3.0/bits/fs_path.h:1055:53: required from here
/public/home/ghfund3_a47/gcc9.3/include/c++/9.3.0/bits/fs_path.h:997:28: error: '__str_codecvt_in_all' was not declared in this scope
The diagnostics script is

Wed Nov 22 22:41:31 CST 2023

System Arch: LSB Version: :core-4.1-amd64:core-4.1-noarch:cxx-4.1-amd64:cxx-4.1-noarch:desktop-4.1-amd64:desktop-4.1-noarch:languages-4.1-amd64:languages-4.1-noarch:printing-4.1-amd64:printing-4.1-noarch Distributor ID: NFSServer Description: NFS Server release 3.2 (RTM1) Release: 3.2 Codename: RTM1

MOOSE Package Version: Custom Build

CPU Count: 128

Memory Free: 148013.219 MB

Variable which $CC check:
/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1/bin/mpicc

$CC --version:
gcc (GCC) 9.3.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

MPICC:
which mpicc:
/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1/bin/mpicc
mpicc -show:
gcc -I/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1/include -I/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1/include/openmpi -I/opt/hpc/software/mpi/hwloc/include -pthread -L/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1/lib -L/opt/hpc/software/mpi/hwloc//lib -L/usr//lib -Wl,-rpath -Wl,/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1/lib -Wl,-rpath -Wl,/opt/hpc/software/mpi/hwloc//lib -Wl,-rpath -Wl,/usr//lib -Wl,--enable-new-dtags -lmpi

COMPILER gcc:
gcc (GCC) 9.3.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Python:
/public/home/ghfund3_a47/mambaforge3/bin/python
Python 3.10.6

MODULES:
Currently Loaded Modulefiles:

1. compiler/devtoolset/7.3.1 3) compiler/dtk/22.10.1
2. mpi/hpcx/2.11.0/gcc-7.3.1

PETSC_DIR not set

ENVIRONMENT:
}
AMDGPU_TARGETS=gfx906
AUTOCLUSCONF=/opt/clusconf/etc/autoconf.cfg
BASH_FUNC_module()=() { eval /usr/bin/modulecmd bash $*
CC=mpicc
_CE_CONDA=
_CE_M=
C_INCLUDE_PATH=/opt/gridview/slurm/include:/opt/gridview/munge/include:/public/software/compiler/dtk-22.10.1/include:/public/software/compiler/dtk-22.10.1/llvm/include:/opt/rh/devtoolset-7/root/usr/include/c++/7:/opt/rh/devtoolset-7/root/usr/include/c++/7/x86_64-redhat-linux:/opt/gridview/slurm/include:/opt/gridview/munge/include
CLUSCONF_HOME=/opt/clusconf
CONDA_DEFAULT_ENV=base
CONDA_EXE=/public/home/ghfund3_a47/mambaforge3/bin/conda
CONDA_PREFIX=/public/home/ghfund3_a47/mambaforge3
CONDA_PROMPT_MODIFIER=(base)
CONDA_PYTHON_EXE=/public/home/ghfund3_a47/mambaforge3/bin/python
CONDA_SHLVL=1
CPATH=/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1/include:/opt/hpc/software/mpi/hpcx/v2.11.0/ucx_without_rocm/include:/opt/hpc/software/mpi/hpcx/v2.11.0/sharp/include:/opt/hpc/software/mpi/hpcx/v2.11.0/hcoll/include
CPLUS_INCLUDE_PATH=/public/software/compiler/dtk-22.10.1/include:/public/software/compiler/dtk-22.10.1/llvm/include:/opt/rh/devtoolset-7/root/usr/include/c++/7:/opt/rh/devtoolset-7/root/usr/include/c++/7/x86_64-redhat-linux
CXX=mpicxx
F77=mpif77
F90=mpif90
FC=mpif90
GRIDVIEW_HOME=/opt/gridview
HCC_HOME=/opt/rocm/hcc
HIP_PATH=/public/software/compiler/dtk-22.10.1/hip
HISTCONTROL=ignoredups
HISTORY_FILE=/var/log/user-log/user.log
HISTSIZE=1000
HOME=/public/home/ghfund3_a47
HOSTNAME=login01
HPCX_DIR=/opt/hpc/software/mpi/hpcx/v2.11.0
HPCX_HCOLL_DIR=/opt/hpc/software/mpi/hpcx/v2.11.0/hcoll
HPCX_HOME=/opt/hpc/software/mpi/hpcx/v2.11.0
HPCX_MPI_DIR=/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1
HPCX_OSHMEM_DIR=/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1
HPCX_SHARP_DIR=/opt/hpc/software/mpi/hpcx/v2.11.0/sharp
HPCX_UCX_DIR=/opt/hpc/software/mpi/hpcx/v2.11.0/ucx_without_rocm
HSA_PATH=/opt/rocm/hsa
http_proxy=http://ghfund3_c13:ghfund3_c13_PWD@10.11.6.211:17928/
https_proxy=http://ghfund3_c13:ghfund3_c13_PWD@10.11.6.211:17928/
INCLUDE=/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1/include:/opt/hpc/software/mpi/hpcx/v2.11.0/ucx_without_rocm/include:/opt/hpc/software/mpi/hpcx/v2.11.0/sharp/include:/opt/hpc/software/mpi/hpcx/v2.11.0/hcoll/include
INFOPATH=/opt/rh/devtoolset-7/root/usr/share/info
IPMICONF=/opt/clusconf/etc/ipmi.cfg
KDEDIRS=/usr
LANG=en_US.UTF-8
LDFLAGS=-Wl,-rpath=/opt/rh/devtoolset-7/root/usr/lib64 -Wl,-rpath=/opt/rh/devtoolset-7/root/usr/lib
LD_LIBRARY_PATH=/opt/gridview/slurm/lib:/opt/gridview/slurm/lib64:/opt/gridview/munge/lib:/public/software/compiler/dtk-22.10.1/lib:/public/software/compiler/dtk-22.10.1/lib64:/public/software/compiler/dtk-22.10.1/hip/lib:/public/software/compiler/dtk-22.10.1/llvm/lib:/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1/lib:/opt/hpc/software/mpi/hpcx/v2.11.0/sharp/lib:/opt/hpc/software/mpi/hpcx/v2.11.0/hcoll/lib:/opt/hpc/software/mpi/hpcx/v2.11.0/ucx_without_rocm/lib:/opt/rh/devtoolset-7/root/usr/lib64:/opt/rh/devtoolset-7/root/usr/lib:/opt/gridview/slurm/lib:/opt/gridview/slurm/lib64:/opt/gridview/munge/lib
LESSOPEN=||/usr/bin/lesspipe.sh %s
LIBRARY_PATH=/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1/lib:/opt/hpc/software/mpi/hpcx/v2.11.0/sharp/lib:/opt/hpc/software/mpi/hpcx/v2.11.0/hcoll/lib:/opt/hpc/software/mpi/hpcx/v2.11.0/ucx_without_rocm/lib
LMFILES=/opt/hpc/software/modules/compiler/devtoolset/7.3.1:/opt/hpc/software/modules/mpi/hpcx/2.11.0/gcc-7.3.1:/public/software/modules/compiler/dtk/22.10.1
LOADEDMODULES=compiler/devtoolset/7.3.1:mpi/hpcx/2.11.0/gcc-7.3.1:compiler/dtk/22.10.1
LOG_HOME=/var/log/user-log
LOGNAME=ghfund3_a47
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:.tar=01;31:.tgz=01;31:.arc=01;31:.arj=01;31:.taz=01;31:.lha=01;31:.lz4=01;31:.lzh=01;31:.lzma=01;31:.tlz=01;31:.txz=01;31:.tzo=01;31:.t7z=01;31:.zip=01;31:.z=01;31:.Z=01;31:.dz=01;31:.gz=01;31:.lrz=01;31:.lz=01;31:.lzo=01;31:.xz=01;31:.bz2=01;31:.bz=01;31:.tbz=01;31:.tbz2=01;31:.tz=01;31:.deb=01;31:.rpm=01;31:.jar=01;31:.war=01;31:.ear=01;31:.sar=01;31:.rar=01;31:.alz=01;31:.ace=01;31:.zoo=01;31:.cpio=01;31:.7z=01;31:.rz=01;31:.cab=01;31:.jpg=01;35:.jpeg=01;35:.gif=01;35:.bmp=01;35:.pbm=01;35:.pgm=01;35:.ppm=01;35:.tga=01;35:.xbm=01;35:.xpm=01;35:.tif=01;35:.tiff=01;35:.png=01;35:.svg=01;35:.svgz=01;35:.mng=01;35:.pcx=01;35:.mov=01;35:.mpg=01;35:.mpeg=01;35:.m2v=01;35:.mkv=01;35:.webm=01;35:.ogm=01;35:.mp4=01;35:.m4v=01;35:.mp4v=01;35:.vob=01;35:.qt=01;35:.nuv=01;35:.wmv=01;35:.asf=01;35:.rm=01;35:.rmvb=01;35:.flc=01;35:.avi=01;35:.fli=01;35:.flv=01;35:.gl=01;35:.dl=01;35:.xcf=01;35:.xwd=01;35:.yuv=01;35:.cgm=01;35:.emf=01;35:.axv=01;35:.anx=01;35:.ogv=01;35:.ogx=01;35:.aac=01;36:.au=01;36:.flac=01;36:.mid=01;36:.midi=01;36:.mka=01;36:.mp3=01;36:.mpc=01;36:.ogg=01;36:.ra=01;36:.wav=01;36:.axa=01;36:.oga=01;36:.spx=01;36:*.xspf=01;36:
MAIL=/var/spool/mail/ghfund3_a47
MANPATH=/opt/gridview/slurm/share/man:/opt/gridview/munge/share/man:/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1/share/man:/opt/rh/devtoolset-7/root/usr/share/man:/opt/gridview/slurm/share/man:/opt/gridview/munge/share/man:
MODULEPATH=/public/software/modules:/opt/hpc/software/modules
MODULESHOME=/usr/share/Modules
MPI_HOME=/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1
MUNGE_HOME=/opt/gridview/munge
NFSCONF=/opt/clusconf/etc/nfs.cfg
OMPI_HOME=/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1
OMPI_MCA_btl_openib_allow_ib=1
OMPI_MCA_btl_openib_warn_default_gid_prefix=0
OMPI_MCA_btl_openib_warn_no_device_params_found=0
OMPI_MCA_btl=^uct
OMPI_MCA_coll_hcoll_enable=0
OMPI_MCA_coll_hcoll_np=0
OMPI_MCA_pml=ucx
OPAL_PREFIX=/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1
OSHMEM_HOME=/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1
PATH=/public/home/ghfund3_a47/gcc9.3/bin:/public/home/ghfund3_a47/cmake-3.28.0-rc5-linux-x86_64/bin:/public/home/ghfund3_a47/cmake3.18/bin:/public/home/ghfund3_a47/mambaforge3/bin:/public/home/ghfund3_a47/mambaforge3/condabin:/opt/rocm/bin:/opt/rocm/profiler/bin:/opt/rocm/opencl/bin/x86_64:/opt/rocm/hcc/bin:/opt/rocm/hip/bin:/opt/gridview/slurm/bin:/opt/gridview/slurm/sbin:/opt/gridview/munge/bin:/opt/gridview/munge/sbin:/opt/clusconf/sbin:/opt/clusconf/bin:/public/software/compiler/dtk-22.10.1/bin:/public/software/compiler/dtk-22.10.1/llvm/bin:/public/software/compiler/dtk-22.10.1/hip/bin:/public/software/compiler/dtk-22.10.1/hip/bin/hipify:/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1/bin:/opt/hpc/software/mpi/hpcx/v2.11.0/hcoll/bin:/opt/hpc/software/mpi/hpcx/v2.11.0/ucx_without_rocm/bin:/opt/rh/devtoolset-7/root/usr/bin:/usr/lib64/qt-3.3/bin:/public/home/ghfund3_a47/perl5/bin:/opt/rocm/bin:/opt/rocm/profiler/bin:/opt/rocm/opencl/bin/x86_64:/opt/rocm/hcc/bin:/opt/rocm/hip/bin:/opt/gridview/slurm/bin:/opt/gridview/slurm/sbin:/opt/gridview/munge/bin:/opt/gridview/munge/sbin:/opt/clusconf/sbin:/opt/clusconf/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/public/home/ghfund3_a47/cmake3.18/bin:/public/home/ghfund3_a47/gcc9.3/bin
PERL5LIB=/opt/rh/devtoolset-7/root/usr/lib64/perl5/vendor_perl:/opt/rh/devtoolset-7/root/usr/share/perl5/vendor_perl:/public/home/ghfund3_a47/perl5/lib/perl5:
PERL_LOCAL_LIB_ROOT=:/public/home/ghfund3_a47/perl5
PERL_MB_OPT=--install_base /public/home/ghfund3_a47/perl5
PERL_MM_OPT=INSTALL_BASE=/public/home/ghfund3_a47/perl5
PROMPT_COMMAND={ date "+[%F %T hostname whoami] history 1 | { read x cmd; echo " -> $USER_ACTION $cmd";}"; }>> $HISTORY_FILE
PWD=/public/home/ghfund3_a47/projects/moose/scripts
QTDIR=/usr/lib64/qt-3.3
QT_GRAPHICSSYSTEM_CHECKED=1
QTINC=/usr/lib64/qt-3.3/include
QTLIB=/usr/lib64/qt-3.3/lib
QT_PLUGIN_PATH=/usr/lib64/kde4/plugins:/usr/lib/kde4/plugins
ROCM_PATH=/public/software/compiler/dtk-22.10.1
session_record=started
SHELL=/bin/bash
SHLVL=3
SHMEM_HOME=/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1
SLURM_HOME=/opt/gridview/slurm
SSH_CLIENT=10.10.2.6 43867 22
SSH_CONNECTION=10.10.2.6 43867 10.10.2.1 22
SSH_TTY=/dev/pts/31
STARTWAITTIME=300
TERM=xterm
UCX_DC_MLX5_TIMEOUT=1000ms
UCX_IB_ADDR_TYPE=ib_global
UCX_IB_PCI_BW=mlx5_0:50Gbs,mlx5_1:50Gbs,mlx5_2:50Gbs,mlx5_3:50Gbs
UCX_MAX_EAGER_LANES=4
UCX_MAX_RNDV_LANES=4
UCX_NET_DEVICES=mlx5_0:1,mlx5_1:1,mlx5_2:1,mlx5_3:1
UCX_RC_MLX5_TIMEOUT=1000ms
UCX_RNDV_THRESH=16384
UCX_ZCOPY_THRESH=16384
USER_ACTION=ghfund3_a47
USER=ghfund3_a47
_=/usr/bin/env
XDG_DATA_DIRS=/public/home/ghfund3_a47/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share:/usr/share
XDG_RUNTIME_DIR=/run/user/3777
XDG_SESSION_ID=4038311

[GiudGiud]

your MPICC is still the old one

/opt/hpc/software/mpi/hpcx/v2.11.0/gcc-7.3.1/bin/mpicc

you need to unload every module, then reload a consistent and updated set of compilers

[ljeft]

I installed mpich-4.1.2, then I got another issue as below:
error: #error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h" 98 | #error "PETSc was configured with OpenMPI but now appears to be compiling using a non-OpenMPI mpi.h"

The export of which $CC $CXX $FC $F77 is /public/home/ghfund3_a47/mpich4.1/bin/mpicc /public/home/ghfund3_a47/mpich4.1/bin/mpicxx /public/home/ghfund3_a47/mpich4.1/bin/mpif90 /public/home/ghfund3_a47/mpich4.1/bin/mpif77

[GiudGiud]

Hello

This means you need to recompile petsc but be careful to use mpich from the beginning

I think you ll want to set CC, CXX and FC environment variables to make sure it builds with the right compilers

Guillaume