Issue getting started with MOOSE

[CM518]

Hi,

I am using the INL HPC and am struggling to get MOOSE working.

When trying to build MOOSE using make -j 6 in /projects/moose/test I get the error “PETSc was configured with MPICH but now appears to be compiling using a non-MPICH mpi.h”.

I have tried following troubleshooting and making sure the Conda environment is active and up to date, with the latest version of the moose packages but to no avail.

I have also tried ./update_and_rebuild_petsc.sh in /projects/moose/scripts and this returns the error “Error configuring SUPERLU_DIST with CMake”.

I have looked at discussions around these topics but unfortunately none have solved my issue.

Any help would be appreciated, thank you in advance.

[GiudGiud]

Hello

Are you following these instructions?
You should not be using conda on INL HPC
https://mooseframework.inl.gov/getting_started/installation/inl_hpc_install_moose.html

What is the exact error for the rebuild_petsc? There should be more context

Guillaume

[CM518]

Hi Guillaume,

Thank you for your help, I had been following those instructions but when the tests failed I went into the troubleshooting page where it only discussed rebuilding MOOSE using Conda. I have now started again and this time MOOSE has built which is great but when running the tests the samplers/distribute.scale/execute test failed (this must have been the original error which took me to the troubleshooting page). Please see the below error report. This was the only test to fail.

samplers/distribute.scale/execute: Working Directory: /home/mccoconn/projects/moose/test/tests/samplers/distribute
samplers/distribute.scale/execute: Running command: /home/mccoconn/projects/moose/test/tests/samplers/distribute/execute.py 
samplers/distribute.scale/execute: mpiexec -n 1 /home/mccoconn/projects/moose/test/moose_test-opt -i distribute.i Outputs/file_base=distribute_1 Postprocessors/test/test_type=getGlobalSamples Samplers/sampler/num_rows=1
samplers/distribute.scale/execute: mpiexec -n 4 /home/mccoconn/projects/moose/test/moose_test-opt -i distribute.i Outputs/file_base=distribute_4 Postprocessors/test/test_type=getGlobalSamples Samplers/sampler/num_rows=1
samplers/distribute.scale/execute: Traceback (most recent call last):
samplers/distribute.scale/execute:   File "/home/mccoconn/projects/moose/test/tests/samplers/distribute/execute.py", line 47, in <module>
samplers/distribute.scale/execute:     execute('distribute.i', 'distribute_none', 1, args.processors, 'getGlobalSamples')
samplers/distribute.scale/execute:   File "/home/mccoconn/projects/moose/test/tests/samplers/distribute/execute.py", line 29, in execute
samplers/distribute.scale/execute:     local = pandas.read_csv('{}.csv'.format(file_base))
samplers/distribute.scale/execute:   File "/apps/moose/stack/moose-tools-2023.10.19/lib/python3.10/site-packages/pandas/io/parsers/readers.py", line 948, in read_csv
samplers/distribute.scale/execute:     return _read(filepath_or_buffer, kwds)
samplers/distribute.scale/execute:   File "/apps/moose/stack/moose-tools-2023.10.19/lib/python3.10/site-packages/pandas/io/parsers/readers.py", line 611, in _read
samplers/distribute.scale/execute:     parser = TextFileReader(filepath_or_buffer, **kwds)
samplers/distribute.scale/execute:   File "/apps/moose/stack/moose-tools-2023.10.19/lib/python3.10/site-packages/pandas/io/parsers/readers.py", line 1448, in __init__
samplers/distribute.scale/execute:     self._engine = self._make_engine(f, self.engine)
samplers/distribute.scale/execute:   File "/apps/moose/stack/moose-tools-2023.10.19/lib/python3.10/site-packages/pandas/io/parsers/readers.py", line 1705, in _make_engine
samplers/distribute.scale/execute:     self.handles = get_handle(
samplers/distribute.scale/execute:   File "/apps/moose/stack/moose-tools-2023.10.19/lib/python3.10/site-packages/pandas/io/common.py", line 863, in get_handle
samplers/distribute.scale/execute:     handle = open(
samplers/distribute.scale/execute: FileNotFoundError: [Errno 2] No such file or directory: 'distribute_4.csv'
samplers/distribute.scale/execute: mpiexec -n 1 /home/mccoconn/projects/moose/test/moose_test-opt -i distribute.i Outputs/file_base=distribute_1 Postprocessors/test/test_type=getGlobalSamples Samplers/sampler/num_rows=1
samplers/distribute.scale/execute: mpiexec -n 4 /home/mccoconn/projects/moose/test/moose_test-opt -i distribute.i Outputs/file_base=distribute_4 Postprocessors/test/test_type=getGlobalSamples Samplers/sampler/num_rows=1
samplers/distribute.scale/execute: Traceback (most recent call last):
samplers/distribute.scale/execute:   File "/home/mccoconn/projects/moose/test/tests/samplers/distribute/execute.py", line 47, in <module>
samplers/distribute.scale/execute:     execute('distribute.i', 'distribute_none', 1, args.processors, 'getGlobalSamples')
samplers/distribute.scale/execute:   File "/home/mccoconn/projects/moose/test/tests/samplers/distribute/execute.py", line 29, in execute
samplers/distribute.scale/execute:     local = pandas.read_csv('{}.csv'.format(file_base))
samplers/distribute.scale/execute:   File "/apps/moose/stack/moose-tools-2023.10.19/lib/python3.10/site-packages/pandas/io/parsers/readers.py", line 948, in read_csv
samplers/distribute.scale/execute:     return _read(filepath_or_buffer, kwds)
samplers/distribute.scale/execute:   File "/apps/moose/stack/moose-tools-2023.10.19/lib/python3.10/site-packages/pandas/io/parsers/readers.py", line 611, in _read
samplers/distribute.scale/execute:     parser = TextFileReader(filepath_or_buffer, **kwds)
samplers/distribute.scale/execute:   File "/apps/moose/stack/moose-tools-2023.10.19/lib/python3.10/site-packages/pandas/io/parsers/readers.py", line 1448, in __init__
samplers/distribute.scale/execute:     self._engine = self._make_engine(f, self.engine)
samplers/distribute.scale/execute:   File "/apps/moose/stack/moose-tools-2023.10.19/lib/python3.10/site-packages/pandas/io/parsers/readers.py", line 1705, in _make_engine
samplers/distribute.scale/execute:     self.handles = get_handle(
samplers/distribute.scale/execute:   File "/apps/moose/stack/moose-tools-2023.10.19/lib/python3.10/site-packages/pandas/io/common.py", line 863, in get_handle
samplers/distribute.scale/execute:     handle = open(
samplers/distribute.scale/execute: FileNotFoundError: [Errno 2] No such file or directory: 'distribute_4.csv'
samplers/distribute.scale/execute: 
samplers/distribute.scale/execute: 
samplers/distribute.scale/execute: Exit Code: 1
samplers/distribute.scale/execute: ################################################################################
samplers/distribute.scale/execute: Tester failed, reason: CRASH
samplers/distribute.scale/execute: 
samplers/distribute.scale/execute ............................................................. FAILED (CRASH)

[GiudGiud]

I dont see anything obvious.
@somu15 seen a failure there before?