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Table design from DSL01 design template.
Formatting changes applied to initial design.
@shajoezhu when this listing is created, the column names (cols 2, 5, 6) appear in the wrong order (contents of columns are in the correct places).
Listing Code:
library(scda)
library(dplyr)
library(rlistings)
adsl<- synthetic_cdisc_data("rcd_2022_06_27")$adslout<-adsl %>%
filter(AEWITHFL=='Y') %>%
mutate(ID= paste(SITEID, SUBJID, sep="/"),
ASR= paste(AGE, SEX, RACE, sep="/"),
DISCONT= ifelse(!is.na(DCSREAS) &EOSSTT!='COMPLETED', "Yes", 'No'),
SSADM= as.POSIXct(
strftime(TRTSDTM, format="%Y-%m-%d %H:%M:%S"),
format="%Y-%m-%d",
tz="UTC")
) %>%
select(ID, ASR, TRT01A, SSADM, EOSDY, DISCONT)
var_labels(out) <- c(
ID="Center/Patient ID",
ASR="Age/Sex/Race",
DISCONT="Discontinued Early from Study?",
SSADM="Date of First Study Drug Administration",
TRT01A="Treatment",
EOSDY="Study Day of Withdrawal"
)
lsting<- as_listing(
out,
cols= names(out)
)
head(lsting, n=10)
Output Listing:
Center/Patient ID Age/Sex/Race Discontinued Early from Study? Date of First Study Drug Administration Treatment Study Day of Withdrawal
———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
BRA-1/id-42 36/M/BLACK OR AFRICAN AMERICAN A: Drug X 2020-01-01 NA No
BRA-11/id-237 64/F/ASIAN C: Combination 2020-03-10 731 No
CHN-1/id-26 29/M/WHITE A: Drug X 2020-07-16 731 No
CHN-1/id-62 36/F/WHITE A: Drug X 2020-11-22 90 Yes
CHN-11/id-256 23/M/ASIAN A: Drug X 2020-03-17 731 No
CHN-11/id-257 32/F/ASIAN C: Combination 2020-11-15 731 No
CHN-11/id-263 34/F/ASIAN C: Combination 2019-04-03 731 No
CHN-11/id-349 40/M/ASIAN C: Combination 2020-11-13 731 No
CHN-11/id-91 44/M/BLACK OR AFRICAN AMERICAN C: Combination 2020-05-29 260 Yes
CHN-13/id-102 37/M/ASIAN B: Placebo 2019-03-23 731 No
The issue is actually not with rlistings per se (though there were other problems I had to fix to run this code, so I'm not really sure how you were doing it, I suspect you have an (possibly very) out of date copy of formatters installed wherever you were trying this.
That said, the issue is actually that var_labels<- is purely positional, and you're giving the labels in an order other than the one the columns appear in.
So rlistings is actually doing the fully correct thing, using the column labels formatters incorrectly placed. I will fix this in formatters.
After the fix to formatters (ie formatters >= 0.3.2.5) var_labels no
longer needs to be in the same order as the df columns, and var_label order
has not and never will dictate order of the columns, so it should be
irrelevant if you set them before or after sorting the columns.
On Mon, Aug 15, 2022 at 6:21 PM Joe Zhu ***@***.***> wrote:
I see! Thanks for the explanation. I understand, I was wondering which way
do you think is a sensible work flow
1. sort the column order, then call the var_labels setter, or
2. call the var_labels setter, and sort the column order
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Table design from DSL01 design template.
Formatting changes applied to initial design.
@shajoezhu when this listing is created, the column names (cols 2, 5, 6) appear in the wrong order (contents of columns are in the correct places).
Listing Code:
Output Listing:
Originally posted by @edelarua in https://github.com/insightsengineering/sme-tasks/issues/327#issuecomment-1203158410
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