DESCRIPTION

Package: MetFamily
Type: Package
Title: MetFamily: Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies
Version: 0.99.5
Date: 2024-11-07
Author: c( person(given = "Hendrik", family = "Treutler", role = c("aut"), email = "hendrik.treutler@ipb-halle.de"),
           person(given = "Khabat", family = "Vahabi", role = c("ctb"), email = "khabat.vahabi@ipb-halle.de"),
           person(given = "Norman", family = "Storz", role = c("ctb"), email = "nstorz@ipb-halle.de"),
           person(given = "Steffen", family = "Neumann", email = "sneumann@ipb-halle.de",
           role = c("aut", "cre"), comment = c(ORCID = "0000-0002-7899-7192")) )
Depends:
    R (>= 3.5.0),
    htmltools,
    shiny,
    shinyBS,
    shinyjs,
    shinybusy,
    DT,
    colourpicker,
    Matrix,
    squash,
    FactoMineR,
    mixOmics,
    pcaMethods,
    cba,
    cowplot,
    gdata,
    searchable, 
    tools,
    stringr,
    mzR,
    matrixStats,
    plotrix,
    slam,
    plotly,
    xcms
Imports:
    egg,
    graphics,
    grDevices,
    methods,
    QFeatures,
    stats,
    utils,
    S4Vectors, 
    SummarizedExperiment,
    openxlsx2
Remotes: 
    decisionpatterns/searchable
Suggests:
    knitr,
    BiocStyle,
    testthat,
    shinytest2
VignetteBuilder: knitr
Maintainer: Steffen Neumann <sneumann@ipb-halle.de>
Description: Untargeted discovery 
  of metabolite families offering a bird's eye view of metabolic regulation 
  in comparative metabolomics. We implemented the presented methodology 
  in the easy-to-use web application MetFamily to enable the analysis 
  of comprehensive metabolomics studies for all researchers worldwide.
License: GPL (>= 2) + file LICENSE
biocViews: Software, Visualization
Collate:
    'Annotation.R'
    'Classifiers.R'
    'runMetFamily.R'
    'FragmentMatrixFunctions.R'
    'DataProcessing.R'
    'Analysis.R'
    'TreeAlgorithms.R'
    'Plots.R'
    'R_packages.R'
    parsePeakAbundanceMatrixQF.R
    readMSDial.R
    readMetaboScape.R
RoxygenNote: 7.2.3
Encoding: UTF-8