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I have found testing to stdout/stderr to be really problematic on Windows. Especially on Node 0.10 (though not exclusively). It's certainly worthwhile to include a handful of integration tests just to make sure all the glue works. Perhaps a better idea would be to run against a fixture with known coverage, and inspect the reports.
It would be nice to have some unit tests for the nyc bin, I'm fine with these simply using spawn and asserting against
stdout
/stderr
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