From 8395f344e369dcd4be76070d3e12d989075bedf8 Mon Sep 17 00:00:00 2001
From: aemmav <167151011+aemmav@users.noreply.github.com>
Date: Fri, 2 Aug 2024 15:21:53 -0400
Subject: [PATCH] Update README.md with more cellpose models

---
 src/cellmap_models/pytorch/cellpose/README.md | 29 +++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/src/cellmap_models/pytorch/cellpose/README.md b/src/cellmap_models/pytorch/cellpose/README.md
index 9426de6..4b2db52 100644
--- a/src/cellmap_models/pytorch/cellpose/README.md
+++ b/src/cellmap_models/pytorch/cellpose/README.md
@@ -10,22 +10,51 @@ This directory contains scripts for downloading finetuned Cellpose models, parti
 
 **jrc_mus-epididymis-2_nuc_cp:**
 
+**jrc_mus-granule-neurons-1_nuc_cp:** Cellpose was trained on nuclei from 12 2D slices from jrc_mus-granule-neurons-1.
+
+**jrc_mus-granule-neurons-2_nuc_cp:** Cellpose was trained on nuclei from 10 2D slices from jrc_mus-granule-neurons-2.
+
+**jrc_mus-granule-neurons-3_nuc_cp:** Cellpose was trained on nuclei from 21 2D slices from jrc_mus-granule-neurons-3.
+
+**jrc_mus-guard-hair-follicle_nuc_cp:** Cellpose was trained on nuclei from 22 2D slices from jrc_mus-guard-hair-follicle.
+
 **jrc_mus-heart-1_ecs_cp:**
 
 **jrc_mus-heart-1_nuc_cp:**
 
 **jrc_mus-hippocampus-1_nuc_cp:**
 
+**jrc_mus-kidney_nuc_cp:** Cellpose was trained on nuclei from 28 2D slices from jrc_mus-kidney.
+
+**jrc_mus-kidney-2_nuc_cp:** Cellpose was trained on nuclei from 38 2D slices from jrc_mus-kidney-2.
+
 **jrc_mus-kidney-3_nuc_cp:**
 
+**jrc_mus-liver-2_nuc_cp:** Cellpose was trained on nuclei from 29 2D slices from jrc_mus-liver-2.
+
 **jrc_mus-liver-3_nuc_cp:**
 
+**jrc_mus-meisnner-corpuscle-1_nuc_cp:** Cellpose was trained on nuclei from 21 2D slices from jrc_mus-meisnner-corpuscle-1.
+
+**jrc_mus-meisnner-corpuscle-2_nuc_cp:** Cellpose was trained on nuclei from 27 2D slices from jrc_mus-meisnner-corpuscle-2.
+
+**jrc_mus-pacinian-corpuscle_nuc_cp:** Cellpose was trained on nuclei from 31 2D slices from jrc_mus-pacinian-corpuscle.
+
+**jrc_mus-pancreas-1_nuc_cp:** Cellpose was trained on nuclei from 34 2D slices from jrc_mus-pancreas-1.
+
+**jrc_mus-pancreas-2_nuc_cp:** Cellpose was trained on nuclei from 30 2D slices from jrc_mus-pancreas-2.
+
+**jrc_mus-pancreas-3_nuc_cp:** Cellpose was trained on nuclei from 4 2D slices from jrc_mus-pancreas-3.
+
 **jrc_mus-pancreas-4_nuc_cp:** Cellpose was trained on nuclei from 17 2D slices from jrc_mus-pancreas-4.
 
 **jrc_mus-skin-1_nuc_cp:**
 
 **jrc_mus-thymus-1_nuc_cp:** 
 
+### Trained on fly tissues
+**jrc_fly-mb-z0419-20:** Cellpose was trained on nuclei from 32 2D slices from jrc_fly-mb-z0419-20.
+
 ## Usage
 
 Once you have chosen a model based on the descriptions above, you can download its weights from the `cellmap-models` repository and use them as described below: