add interface to c function realpath #2
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| # CIME scripts regression tests | |
| name: scripts regression tests | |
| # Controls when the action will run. Triggers the workflow on push or pull request | |
| # events but only for the master branch | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.8, 3.9, 3.11] | |
| env: | |
| CC: mpicc | |
| FC: mpifort | |
| CXX: mpicxx | |
| CPPFLAGS: "-I/usr/include -I/usr/local/include" | |
| CIME_TEST_PLATFORM: ubuntu-latest | |
| # Versions of all dependencies can be updated here | |
| PNETCDF_VERSION: pnetcdf-1.12.3 | |
| NETCDF_FORTRAN_VERSION: v4.6.0 | |
| MCT_VERSION: MCT_2.11.0 | |
| PARALLELIO_VERSION: pio2_5_10 | |
| NETCDF_C_PATH: /usr | |
| NETCDF_FORTRAN_PATH: ${HOME}/netcdf-fortran | |
| PNETCDF_PATH: ${HOME}/pnetcdf | |
| CIME_MODEL: cesm | |
| CIME_DRIVER: mct | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - name: cime checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: ESMCI/cime | |
| submodules: True | |
| # - name: genf90 checkout | |
| # uses: actions/checkout@v2 | |
| # with: | |
| # repository: PARALLELIO/genf90 | |
| # path: CIME/non_py/externals/genf90 | |
| - name: ccs_config checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: ESMCI/ccs_config_cesm | |
| path: ccs_config | |
| - name: share checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: ESCOMP/CESM_share | |
| path: share | |
| - name: cpl7 checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: ESCOMP/CESM_CPL7andDataComps | |
| path: components/cpl7 | |
| - id: load-env | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libxml2-utils pylint wget gfortran openmpi-bin netcdf-bin libopenmpi-dev cmake libnetcdf-dev | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - name: pip install | |
| run: pip install PyYAML | |
| - name: mct install | |
| run: | | |
| git clone -b ${{ env.MCT_VERSION }} https://github.com/MCSclimate/MCT libraries/mct | |
| ls -l libraries/mct | |
| - name: parallelio install | |
| run: | | |
| git clone -b ${{ env.PARALLELIO_VERSION }} https://github.com/NCAR/ParallelIO libraries/parallelio | |
| ls -l libraries/parallelio | |
| - name: cache pnetcdf | |
| id: cache-pnetcdf | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/pnetcdf | |
| key: ${{ runner.os }}-${{ env.PNETCDF_VERSION}}-pnetcdf-redo | |
| - name: pnetcdf build | |
| if: steps.cache-pnetcdf.outputs.cache-hit != 'true' | |
| run: | | |
| wget https://parallel-netcdf.github.io/Release/${{ env.PNETCDF_VERSION }}.tar.gz | |
| tar -xzvf ${{ env.PNETCDF_VERSION }}.tar.gz | |
| ls -l | |
| pushd ${{ env.PNETCDF_VERSION }} | |
| ./configure --prefix=$HOME/pnetcdf --enable-shared --disable-cxx | |
| make | |
| make install | |
| popd | |
| - name: Cache netcdf-fortran | |
| id: cache-netcdf-fortran | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/netcdf-fortran | |
| key: ${{ runner.os }}-${{ env.NETCDF_FORTRAN_VERSION }}-netcdf-fortran-redo | |
| - name: netcdf fortran build | |
| if: steps.cache-netcdf-fortran.outputs.cache-hit != 'true' | |
| run: | | |
| sudo apt-get install libnetcdf-dev | |
| wget https://github.com/Unidata/netcdf-fortran/archive/${{ env.NETCDF_FORTRAN_VERSION }}.tar.gz | |
| tar -xzvf ${{ env.NETCDF_FORTRAN_VERSION }}.tar.gz | |
| ls -l | |
| pushd netcdf-fortran-* | |
| ./configure --prefix=$HOME/netcdf-fortran | |
| make | |
| make install | |
| - name: link netcdf-c to netcdf-fortran path | |
| # link netcdf c library here to simplify build | |
| run: | | |
| pushd ${{ env.NETCDF_FORTRAN_PATH }}/include | |
| ln -fs /usr/include/*netcdf* . | |
| pushd ${{ env.NETCDF_FORTRAN_PATH }}/lib | |
| clibdir=`nc-config --libdir` | |
| ln -fs $clibdir/lib* . | |
| - name: Cache inputdata | |
| if: ${{ ! env.ACT }} | |
| uses: actions/cache@v3 | |
| with: | |
| path: $HOME/cesm/inputdata | |
| key: inputdata | |
| # | |
| # The following can be used to ssh to the testnode for debugging | |
| # see https://github.com/mxschmitt/action-tmate for details | |
| # - name: Setup tmate session | |
| # uses: mxschmitt/action-tmate@v3 | |
| - name: scripts regression tests | |
| run: | | |
| mkdir -p $HOME/cesm/scratch | |
| mkdir -p $HOME/cesm/inputdata | |
| cd $HOME/work/CESM_share/CESM_share | |
| ls -l $HOME/work/CESM_share/CESM_share | |
| export NETCDF=$HOME/netcdf-fortran | |
| export PATH=$NETCDF/bin:$PATH | |
| export LD_LIBRARY_PATH=$NETCDF/lib:$HOME/pnetcdf/lib:$LD_LIBRARY_PATH | |
| python -m pip install pytest pytest-cov | |
| pytest -vvv --no-fortran-run --compiler gnu --mpilib openmpi --machine ubuntu-latest | |
| # the following can be used by developers to login to the github server in case of errors | |
| # see https://github.com/marketplace/actions/debugging-with-tmate for further details | |
| # - name: Setup tmate session | |
| # if: ${{ failure() }} | |
| # uses: mxschmitt/action-tmate@v3 |