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Community Atmosphere Model (CAM)
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-Implementation of PIO in CAM

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CAM references PIO through both interface routines (which call PIO routines) and PIO routines proper. The interface routines control much of the setting up of PIO output and input, whereas the actual output and input is accomplished through direct PIO calls. The PIO routines are located in models/utils/pio. A description of the PIO package along with usage information may be found in the main PIO documentation. We will first describe the interface and then cover the direct calls.

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-Description of the CAM Interface

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The CAM interface to PIO consists of the pio_utils module, which is the file models/atm/cam/src/utils/pio_utils.F90.

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Init_pio_subsystem is the first routine called. It is called from cam_init and initializes PIO in CAM. Init_pio_subsystem calls read_namelist_pio, which calls set_pio_parameters. The main parameters set includes the IO mode (netcdf vs pnetcdf), number of IO tasks, and IO stride.

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Cam_pio_createfile and cam_pio_openfile create and open a PIO file, respectively. Cam_pio_createfile is called from cam_write_restart, h_define (called from wshist, which is called from write_restart_history), and atm_write_srfrest_mct.

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Cam_pio_openfile is called from setup_initial (called from cam_initial), cam_read_restart, read_restart_history, atm_read_srfrest_mct, and wrapup (called from cam_run4).

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Clean_iodesc_list, called from startup_initialconds and cam_read_restart, cleans the list of IO descriptors.

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Get_phys_decomp and get_dyn_decomp create decompositions for physics and dynamics variables, respectively. Get_decomp is an interface to those routines.

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Get_phys_decomp is directly called from infld_real_2d, infld_real_3d, infld_real_3dncol; read_restart_physics, write_restart_physics; and pbuf_read_restart, pbuf_write_restart.

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Get_dyn_decomp is directly called from infld_real_2d and infld_real_3d.

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Get_decomp is called from read_restart_history and dump_field (called from wshist, which is called from write_restart_history). We see that the only time the get_decomp interface is called is when dealing with history variables (where each variable contains a description telling whether it relates to dynamics or physics).

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Get_phys_decomp and get_dyn_decomp have an optional column (or column_in) argument, which is used when defining history variables over a range of columns rather than the whole domain.

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Whenever a decomposition is created, a description of that decomposition is stored in a list. When a new variable is catalogued, that list is searched to see if that needed decomposition already exists. The routine performing that search is find_iodesc (called from get_phys_decomp and get_dyn_decomp). This capability is supported only when the range of history output is the whole domain.

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Get_phys_decomp calls get_phys_ldof (or get_column_ldof), and get_dyn_decomp calls get_dyn_ldof (or get_column_ldof). These routines do the bulk of the work in constructing the IO decompositions. Get_column_ldof is called when the history output is restricted to a subset of the domain.

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-Direct calls to PIO

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Virtually all the calls to PIO routines reference the pio module, located in pio.F90. Many of the variables contained in the pio module are referenced as well. This section of the documentation focuses on these calls and surrounding environs and discusses data types only peripherally.

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-Writing a history file

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Write_restart_history (in control/cam_history.F90) controls the writing of a history file. Wshist writes the main variables that are on history tapes. Pio_put_var is used to write header information, and subroutine dump_field writes the main history variables, using primarily PIO_write_darray. Additional variables are then written using PIO_put_var. (Recall that PIO_write_darray isused to write distributed arrays.)

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-Reading a history file

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Read_restart_history (in control/cam_history.F90) controls the reading of a history file. Individual parameters are first read using pio_get_var. History variables are then read in using PIO_read_darray (which reads distributed arrays).

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-Writing a restart dump

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Cam_write_restart (in control/cam_restart.F90) controls the writing of a restart dump. The calling chain includes write_restart_hycoef (which writes the pressure coefficients), write_restart_dynamics, write_restart_physics, and write_restart_history. Write_restart_coef is in hycoef.F90 and uses PIO_put_var calls. Write_restart_dynamics is in restart_dynamics.F90 (in the dynamics subdirectory relevant to the active dynamical core) and issues primarily PIO_write_darray calls. Write_restart_physics is in physics/cam/restart_physics.F90. It calls a number of restart routines relating to chemistry and aerosols, such as pbuf_write_restart (in physics/cam/phys_buffer.F90), chem_write_restart (in chemistry/mozart), and write_prescribed_?????_restart (where ????? = ozone, ghg, aero, volcaero), located in chemistry/utils/prescribed_?????.F90. Pbuf_write_restart calls the relevant decomposition routine followed by PIO_write_darray. Chem_write_restart calls write_?????_restart (where ????? = tracer_cnst, tracer_srcs, linoz_data, spedata), located in chemistry/mozart/?????.F90. These routines typically use PIO_put_var. Write_restart_history is in cam_history.F90 and uses PIO_put_var.

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-Reading a restart dump

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Cam_read_restart (in control/cam_restart.F90) controls the reading of a restart dump. The calling chain corresponds to that for cam_write_restart, and includes read_restart_hycoef, read_restart_dynamics, read_restart_physics, and read_restart_history. Typical routines called are pio_get_var and PIO_read_darray.

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-Initialization

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Cam_init (in control/cam_comp.F90) calls cam_initial and phys_init. Cam_initial, which is located in the relevant dynamics subdirectory, calls initial_conds, located in control/startup_initialconds. Initial_conds calls read_inidat, which is located in the relevant dynamics subdirectory. Read_inidat calls infld, located in control/ncdio_atm.F90. Infld calls the relevant decomposition routine followed by PIO_read_darray.

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Phys_init is located in physics/cam/phys_grid.F90 and calls a number of initialization routines. An important one is phys_inidat, which makes several calls to infld.

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Data Types
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Here are the data types with brief descriptions:
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[detail level 12]
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 ▼Npio_types
 Cdecompmap_t
 Cfile_desc_tFile descriptor returned by PIO_openfile or PIO_createfile (see pio_types)
 Cio_desc_tAn io descriptor handle that is generated in PIO_initdecomp (see pio_types)
 Ciosystem_desc_tA defined PIO system descriptor created by PIO_init (see pio_types)
 Cpio_rearr_comm_fc_opt_t
 Cpio_rearr_opt_t
 Cvar_desc_tA variable descriptor returned from PIO_def_var (see pio_types)
 ▼Npiodarray
 CPIOc_read_darray
 CPIOc_write_darray_multi
 ▼Npioexample
 CpioexampleclassA class to hold example code and data
 ▼Npionfget_mod
 CPIOc_get_var_double
 CPIOc_get_var_float
 CPIOc_get_var_int
 CPIOc_get_vara_double
 CPIOc_get_vara_float
 CPIOc_get_vara_int
 CPIOc_get_vara_text
 ▼Npionfput_mod
 CPIOc_put_vara_double
 CPIOc_put_vara_float
 CPIOc_put_vara_int
 CPIOc_put_vara_text
 Cfile_desc_tFile descriptor structure
 Cio_desc_tIO descriptor structure
 Cio_regionIO region structure
 Ciosystem_desc_tIO system descriptor structure
 Crearr_comm_fc_optRearranger comm flow control options
 Crearr_optRearranger options
 Cvar_desc_tVariable description structure
 Cwmulti_bufferThe multi buffer holds data from one or more variables
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PIO Fortran Interface
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This is a list of all user interface routines:

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-PIO startup and shutdown routines

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-PIO decomposition routines

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-Reading and Writing distributed variables

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-NetCDF format specific routines

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Also see: http://www.unidata.ucar.edu/software/netcdf/docs/

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-Reading/Writing netcdf metadata

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-Netcdf utility routines

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-NetCDF file inquiry routines

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-Generated on Wed May 22 2019 15:09:23 for PIO by   -doxygen - 1.8.13 -
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PIO -  2.4.2 -
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Guide for Contributors
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Introduction

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This document describes the code style to be used when contributing to the PIO library.

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Consistency of style allows bugs to be spotted more quickly and contributes to code quality.

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C Code

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Warnings

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The C library compiles under GNU gcc without warnings. No code will be merged with the C library which causes warnings during compile.

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Backward Compatibility

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We cannot remove or change a function in the public C API. We can add to it, carefully.

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Brevity

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Consider: C is a terse language.

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    -
  • -Use the fact that NULL == 0, and 0 == false, to shorten code.
    • -
  • -Assign and check return values in the same if statement.
    • -
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Indentation and Spacing

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    -
  • -Use spaces not tabs.
    • -
  • -4 spaces is the unit of intendation.
    • -
  • -Indentation as defined by the "linux" style in emacs (see below).
    • -
  • -Use spaces around most operators (= + - * /) not pointer or prefix/postfile (* ++ –)
    • -
  • -Spaces after most keywords (if, for, while, etc.)
    • -
  • -No spaces after function name.
    • -
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Braces

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Put braces on their own line, avoiding their use if possible.

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Documentation

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    -
  • -Every function must be documented using doxygen.
    • -
  • -Keep internal functions in separate code files, so that Doxygen can easily build user and development builds of the documentation.
    • -
  • -Use the doxygen @ingroup to put public functions in the correct group.
    • -
  • -Code must be reasonably documented as to intention.
    • -
  • -Documentation quality and quantity are part of code review process.
    • -
  • -Document in complete sentences.
    • -
  • -Use C (not C++) comment delimiters.
    • -
  • -Use the author tag to indicate which programmers have worked on each function. When adding or changing a function in a non-trivial way, programmers should add their name to the end of the list of authors for that function.
    • -
-

Emacs

-

Put this in your .emacs file:

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-(setq c-default-style "linux"
-          c-basic-offset 4)
-

The tab key (used anywhere on the line) will indent a line correctly. M-x indent-region will indent a selected region of code.

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M-x untabify will convert all the tabs in a file to spaces.

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Code Review

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    -
  • -

    All code is subject to review.

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    • -
  • -

    Pull requests will be focused on one issue.

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    • -
  • -

    Pull requests may not be submitted until all tests pass.

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    • -
  • -

    All non-trivial pull requests are associated with a github issue. The issue is where discussion of requirements and implementation details can be worked out.

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    • -
  • -

    Pull requests will be left up on github for about a day. Request more time if you need it and are actively reviewing the code. (Note that pull request can also be reviewed after they are merged, if you miss one).

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  • -

    Jim will identify key stakeholders in changed code and ensure they accept code changes.

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  • -

    Reviewers are open-minded and ready to accept improvements to the library.

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    • -
  • -

    Reviewers will make comments on the pull request. All comments must be resolved.

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    • -
  • -

    If chages are dictated, they happen on the branch, so code reviewers can see the updated code.

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    • -
  • -

    The pull request is only merged when all programmers agree that all issues have been resolved.

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Merge Proceedure

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  • -

    Programmers begin work on a feature or fix by branching from develop.

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    • -
  • -

    When a branch is ready, it is submitted to code review.

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    • -
  • -

    When code review is complete, and the changes are approved, the PR is merged into the develop branch.

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    • -
  • -

    Mutliple merges into the develop branch may take place between test cycles. (???)

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  • -

    The develop branch is tested automatically by Jenkins.

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    The develop branch is tested periodically by CDash (every ~6 hours).

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    After all jenkins and Cdash builds complete successfully, with all tests passing, and no warnings, the PR is merged into master by the integrator.

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    • -
  • -

    Multiple PRs may be merged to master between test cycles. (???)

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  • -

    The branch is then deleted by whomever merged it to master.

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    The master branch is then tested on Jenkins.

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    The master branch is tested on CDash. Any test failures and the merge to master will be rolled back.

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    • -
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Formatting Example

-
-/** 
-   @ingroup PIOc_inq_attname
-   The PIO-C interface for the NetCDF function nc_inq_attname.
   This routine is called collectively by all tasks in the communicator 
-   ios.union_comm. For more information on the underlying NetCDF commmand
-   please read about this function in the NetCDF documentation at: 
-   http://www.unidata.ucar.edu/software/netcdf/docs/group__attributes.html
   @param ncid the ncid of the open file, obtained from
-   PIOc_openfile() or PIOc_createfile().
-   @param varid the variable ID.
-   @param attnum the attribute ID.
-   @return PIO_NOERR for success, error code otherwise.  See PIOc_Set_File_Error_Handling
- */
-int PIOc_inq_attname(int ncid, int varid, int attnum, char *name) 
-{
-    iosystem_desc_t *ios;  /* Pointer to io system information. */
-    file_desc_t *file;     /* Pointer to file information. */
-    int ierr = PIO_NOERR;  /* Return code from function calls. */
-    int mpierr = MPI_SUCCESS, mpierr2;  /* Return code from MPI function codes. */
    LOG((1, "PIOc_inq_attname ncid = %d varid = %d attnum = %d", ncid, varid,
-         attnum));
    /* Find the info about this file. */
-    if (!(file = pio_get_file_from_id(ncid)))
-        return PIO_EBADID;
-    ios = file->iosystem;
    /* If async is in use, and this is not an IO task, bcast the parameters. */
-    if (ios->async_interface)
-    {
-        if (!ios->ioproc)
-        {
-            int msg = PIO_MSG_INQ_ATTNAME;
-            char name_present = name ? true : false;
            if(ios->compmaster) 
-                mpierr = MPI_Send(&msg, 1,MPI_INT, ios->ioroot, 1, ios->union_comm);
            if (!mpierr)
-                mpierr = MPI_Bcast(&ncid, 1, MPI_INT, ios->compmaster, ios->intercomm);
-            if (!mpierr)
-                mpierr = MPI_Bcast(&varid, 1, MPI_INT, ios->compmaster, ios->intercomm);
-            if (!mpierr)
-                mpierr = MPI_Bcast(&attnum, 1, MPI_INT, ios->compmaster, ios->intercomm);
-            if (!mpierr)
-                mpierr = MPI_Bcast(&name_present, 1, MPI_CHAR, ios->compmaster, ios->intercomm);
-        }
        /* Handle MPI errors. */
-        if ((mpierr2 = MPI_Bcast(&mpierr, 1, MPI_INT, ios->comproot, ios->my_comm)))
-            check_mpi(file, mpierr2, __FILE__, __LINE__);
-        if (mpierr)
-            return check_mpi(file, mpierr, __FILE__, __LINE__);
-    }
    /* If this is an IO task, then call the netCDF function. */
-    if (ios->ioproc)
-    {
-#ifdef _PNETCDF
-        if (file->iotype == PIO_IOTYPE_PNETCDF)
-            ierr = ncmpi_inq_attname(file->fh, varid, attnum, name);
-#endif /* _PNETCDF */
-#ifdef _NETCDF
-        if (file->iotype != PIO_IOTYPE_PNETCDF && file->do_io)
-            ierr = nc_inq_attname(file->fh, varid, attnum, name);
-#endif /* _NETCDF */
-        LOG((2, "PIOc_inq_attname netcdf call returned %d", ierr));
-    }
    /* Broadcast and check the return code. */
-    if ((mpierr = MPI_Bcast(&ierr, 1, MPI_INT, ios->ioroot, ios->my_comm)))
-    {
-        check_mpi(file, mpierr, __FILE__, __LINE__);            
-        return PIO_EIO;
-    }
-    check_netcdf(file, ierr, __FILE__, __LINE__);
    /* Broadcast results to all tasks. Ignore NULL parameters. */
-    if (!ierr)
-        if (name)
-        {
-            int namelen = strlen(name);
-            if ((mpierr = MPI_Bcast(&namelen, 1, MPI_INT, ios->ioroot, ios->my_comm)))
-                check_mpi(file, mpierr, __FILE__, __LINE__);
-            if ((mpierr = MPI_Bcast((void *)name, namelen + 1, MPI_CHAR, ios->ioroot,
-                                    ios->my_comm)))
-                check_mpi(file, mpierr, __FILE__, __LINE__);
-        }
    return ierr;
-}
-

Further Information

-

For style issues not already covered in this document, see this style guide.

-

Last updated: 05-16-2016

-
- -
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Describing decompositions
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One of the biggest challenges to working with PIO is setting up the call to PIO_initdecomp. The user must properly describe how the data within each MPI tasks memory should be placed or retrieved from disk. PIO provides two methods to rearrange data from compute tasks to IO tasks. The first method, called box rearrangement is the only one provided in PIO1. The second called subset rearrangement is introduced in PIO2.

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-Box rearrangement

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In this method data is rearranged from compute to IO tasks such that the arrangement of data on the IO tasks optimizes the call from the IO tasks to the underlying (NetCDF) IO library. In this case each compute task will transfer data to one or more IO tasks.

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In this method each IO task is associated with a unique subset of compute tasks so that each compute task will transfer data to one and only one IO task. Since this technique does not guarantee that data on the IO node represents a contiguous block of data on the file it may require multiple calls to the underlying (NetCDF) IO library.

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As an example suppose we have a global two dimensional grid of size 4x5 decomposed over 5 tasks. We represent the two dimensional grid in terms of offset from the initial element ie 

-     0  1  2  3 
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Now suppose this data is distributed over the compute tasks as follows: 

-0: {   0  4 8 12  } 
-1: {  16 1 5 9  } 
-2: {  13 17 2 6  } 
-3: {  10 14 18 3  } 
-4: {   7 11 15 19  } 
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If we have 2 io tasks the Box rearranger would give: 

-0: { 0  1  2  3  4  5  6  7  8  9  }
-1: { 10 11 12 13 14 15 16 17 18 19 }
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While the subset rearranger would give: 

-0: { 0  1  4  5  8  9  12 16 }
-1: { 2  3  6  7  10 11 13 14 15 17 18 19 }
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Note that while the box rearranger gives a data layout which is well balanced and well suited for the underlying io library, it had to communicate with every compute task to do so. On the other hand the subset rearranger communicated with only a portion of the compute tasks but requires more work on the part of the underlying io library to complete the operation.

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Also note if every task is an IO task then the box rearranger will need to do an alltoall communication, while the subset rearranger does none. In fact using the subset rearranger with every compute task an IO task provides a measure of what you might expect the performance of the underlying IO library to be if it were used without PIO.

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Deprecated List
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Subprogram piolib_mod::initdecomp_1dof_bin_i8 (iosystem, basepiotype, dims, lenblocks, compdof, iodofr, iodesc)
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Subprogram piolib_mod::initdecomp_1dof_nf_i4 (iosystem, basepiotype, dims, lenblocks, compdof, iodof, start, count, iodesc)
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Subprogram piolib_mod::initdecomp_2dof_bin_i4 (iosystem, basepiotype, dims, lenblocks, compdof, iodofr, iodofw, iodesc)
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file  pio.F90
 User interface Module for PIO, this is the only file a user program should 'use'.
 
file  pio_kinds.F90
 basic data types
 
file  pio_support.F90
 internal code for compiler workarounds, aborts and debug functions
 
file  pio_types.F90
 Derived datatypes and constants for PIO Fortran API.
 
file  piodarray.f90
 Read and write routines for decomposed data.
 
file  piolib_mod.f90
 Initialization Routines for PIO.
 
file  pionfatt_mod_2.f90
 NetCDF attribute interface to PIO.
 
file  pionfget_mod_2.f90
 Read Routines for non-decomposed NetCDF data.
 
file  pionfput_mod.f90
 Write routines for non-decomposed NetCDF data.
 
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file  examplePio.f90
 A simple Fortran example for the ParallelIO Library.
 
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file  example1.c
 A simple C example for the ParallelIO Library.
 
file  example2.c
 A simple C example for the ParallelIO Library.
 
file  examplePio.c
 A simple C example for the ParallelIO Library.
 
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file  pio.h [code]
 Public headers for the PIO C interface.
 
file  pio_darray.c
 Public functions that read and write distributed arrays in PIO.
 
file  pio_file.c
 PIO File Handling.
 
file  pio_get_nc.c
 PIO functions to get data.
 
file  pio_nc.c
 PIO interfaces to NetCDF support functions.
 
file  pio_nc4.c
 Functions to wrap netCDF-4 functions for PIO.
 
file  pio_put_nc.c
 PIO functions to write data.
 
file  pioc.c
 Some initialization and support functions.
 
file  pioc_support.c
 Support functions for the PIO library.
 
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- var summary = $('#'+base+'-summary'); - var content = $('#'+base+'-content'); - var trigger = $('#'+base+'-trigger'); - var src=$(trigger).attr('src'); - if (content.is(':visible')===true) { - content.hide(); - summary.show(); - $(linkObj).addClass('closed').removeClass('opened'); - $(trigger).attr('src',src.substring(0,src.length-8)+'closed.png'); - } else { - content.show(); - summary.hide(); - $(linkObj).removeClass('closed').addClass('opened'); - $(trigger).attr('src',src.substring(0,src.length-10)+'open.png'); - } - return false; -} - -function updateStripes() -{ - $('table.directory tr'). - removeClass('even').filter(':visible:even').addClass('even'); -} - -function toggleLevel(level) -{ - $('table.directory tr').each(function() { - var l = this.id.split('_').length-1; - var i = $('#img'+this.id.substring(3)); - var a = $('#arr'+this.id.substring(3)); - if (l - - - - - - -PIO: Error Handling - - - - - - - - - - -
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PIO -  2.4.2 -
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Error Handling
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By default, PIO handles errors internally by printing a string describing the error and then calling mpi_abort. Application developers can change this behaivior with a call to PIO_seterrorhandling

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 call pio_seterrorhandling(File, PIO_BCAST_ERROR)
- ierr =  pio_inq_varid(File, 'U', uid)
- call pio_seterrorhandling(File, PIO_INTERNAL_ERROR)
- if(ierr/= PIO_NOERR) then
-   write(stderr,*) 'Variable U not found on input file, setting to 0'
-   U=0
- else
-   ...
- endif
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Use this instead of ios to set error handling for the library.

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Examples
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Examples Included with PIO Distribution

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The PIO library examples can be found under the examples subdirectory. They are built with the make test or make check build target.

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C Examples

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The C examples are in the examples/c subdirectory.

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  • examplePio.c A simple example showing a write, then read, of a 1D variable.
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  • example1.c Another simple example showing a write, then read, of a 1D variable. This produces the same output as examplePio.c.
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  • example2.c This example writes a 3D floating point variable, with an unlimited dimension. The data are written in slices along the unlimited dimension. This example also incorporates (if installed) the MPE profiling system to generate graphical output.
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Fortran Examples

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The Fortran examples are in the examples/f03 subdirectory.

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  • examplePio.f90 A simple example showing a write, then read, of a 1D variable.
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Other Examples

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PIO has been implemented in several geophysical component models, including the Community Atmosphere Model (CAM), the Community Land Model (CLM), the Parallel Ocean Program (POP), the Community Ice CodE (CICE), and coupler for used by CCSM4.0 (CPL7). We also provide several simpler example code as well as a test code that is suitable for regression testing and benchmarking.

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- - diff --git a/docs/example1_8c.html b/docs/example1_8c.html deleted file mode 100644 index d59830b487f..00000000000 --- a/docs/example1_8c.html +++ /dev/null @@ -1,486 +0,0 @@ - - - - - - - -PIO: example1.c File Reference - - - - - - - - - - -
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-Macros | -Functions | -Variables
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example1.c File Reference
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A simple C example for the ParallelIO Library. -More...

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#include "config.h"
-#include <getopt.h>
-#include <stdio.h>
-#include <stdlib.h>
-#include <unistd.h>
-#include <mpi.h>
-#include <pio.h>
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-Include dependency graph for example1.c:
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-Macros

#define NUM_NETCDF_FLAVORS   4
 The number of possible output netCDF output flavors available to the ParallelIO library. More...
 
#define NDIM   1
 The number of dimensions in the example data. More...
 
#define DIM_LEN   16
 The length of our sample data. More...
 
#define DIM_NAME   "x"
 The name of the dimension in the netCDF output file. More...
 
#define VAR_NAME   "foo"
 The name of the variable in the netCDF output file. More...
 
#define ERR_BAD   1001
 Return code when netCDF output file does not match expectations. More...
 
#define START_DATA_VAL   42
 The meaning of life, the universe, and everything. More...
 
#define MPIERR(e)
 Handle MPI errors. More...
 
#define ERR(e)
 Handle non-MPI errors by finalizing the MPI library and exiting with an exit code. More...
 
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-Functions

int check_file (int ntasks, char *filename)
 Check the output file. More...
 
int main (int argc, char *argv[])
 Main execution of code. More...
 
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-Variables

char err_buffer [MPI_MAX_ERROR_STRING]
 Global err buffer for MPI. More...
 
int resultlen
 This is the length of the most recent MPI error message, stored int the global error string. More...
 
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Detailed Description

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A simple C example for the ParallelIO Library.

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This example creates a netCDF output file with one dimension and one variable. It first writes, then reads the sample file using the ParallelIO library.

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This example can be run in parallel for 1, 2, 4, 8, or 16 processors.

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Macro Definition Documentation

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◆ DIM_LEN

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#define DIM_LEN   16
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The length of our sample data.

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There will be a total of 16 integers in our data, and responsibilty for writing and reading them will be spread between all the processors used to run this example.

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◆ DIM_NAME

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#define DIM_NAME   "x"
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The name of the dimension in the netCDF output file.

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◆ ERR

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#define ERR( e)
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-Value:
do { \
MPI_Finalize(); \
return e; \
} while (0)
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Handle non-MPI errors by finalizing the MPI library and exiting with an exit code.

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◆ ERR_BAD

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#define ERR_BAD   1001
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Return code when netCDF output file does not match expectations.

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◆ MPIERR

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#define MPIERR( e)
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-Value:
do { \
MPI_Error_string(e, err_buffer, &resultlen); \
printf("MPI error, line %d, file %s: %s\n", __LINE__, __FILE__, err_buffer); \
MPI_Finalize(); \
return 2; \
} while (0)
err_buffer
char err_buffer[MPI_MAX_ERROR_STRING]
Global err buffer for MPI.
Definition: example1.c:70
-
resultlen
int resultlen
This is the length of the most recent MPI error message, stored int the global error string...
Definition: example1.c:74
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Handle MPI errors.

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This should only be used with MPI library function calls.

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◆ NDIM

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#define NDIM   1
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The number of dimensions in the example data.

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In this simple example, we are using one-dimensional data.

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◆ NUM_NETCDF_FLAVORS

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#define NUM_NETCDF_FLAVORS   4
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The number of possible output netCDF output flavors available to the ParallelIO library.

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◆ START_DATA_VAL

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#define START_DATA_VAL   42
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The meaning of life, the universe, and everything.

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◆ VAR_NAME

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#define VAR_NAME   "foo"
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The name of the variable in the netCDF output file.

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Function Documentation

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◆ check_file()

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int check_file (int ntasks,
char * filename 
)
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Check the output file.

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Use netCDF to check that the output is as expected.

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Parameters
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ntasksThe number of processors running the example.
filenameThe name of the example file to check.
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-
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Returns
0 if example file is correct, non-zero otherwise.
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< File ID from netCDF.

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< Number of dimensions.

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< Number of variables.

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< Number of global attributes.

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< ID of unlimited dimension.

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< Length of the dimension.

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< Number of variable attributes.

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< NetCDF data type of this variable.

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< Return code for function calls.

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< Dimension ids for this variable.

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< Name of the dimension.

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< Name of the variable.

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< Zero-based index to start read.

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< Number of elements to read.

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< Buffer to read in data.

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< Data values we expect to find.

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◆ main()

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int main (int argc,
char * argv[] 
)
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Main execution of code.

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Executes the functions to:

    -
  • create a new examplePioClass instance
    • -
  • initialize MPI and the ParallelIO libraries
    • -
  • create the decomposition for this example
    • -
  • create the netCDF output file
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  • define the variable in the file
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  • write data to the variable in the file using decomposition
    • -
  • read the data back from the file using decomposition
    • -
  • close the file
    • -
  • clean up resources
    • -
-

The example can be run from the command line (on system that support it) like this: 

-mpiexec -n 4 ./examplePio
-

The sample file created by this program is a small netCDF file. It has the following contents (as shown by ncdump) for a 4-processor run:

-
-netcdf examplePio_c {
-dimensions:
-x = 16 ;
-variables:
-int foo(x) ;
-data:
foo = 42, 42, 42, 42, 43, 43, 43, 43, 44, 44, 44, 44, 45, 45, 45, 45 ;
-}
-
Parameters
- - - -
[in]argcargument count (should be zero)
[in]argvargument array (should be NULL)
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-
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Return values
- - -
examplePioClass*Pointer to self.
-
-
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Set to non-zero to get output to stdout.

-

Zero-based rank of processor.

-

Number of processors involved in current execution.

-

Different output flavors. The example file is written (and then read) four times. The first two flavors, parallel-netcdf, and netCDF serial, both produce a netCDF classic format file (but with different libraries). The last two produce netCDF4/HDF5 format files, written with and without using netCDF-4 parallel I/O.

-

Number of processors that will do IO. In this example we will do IO from all processors.

-

Stride in the mpi rank between io tasks. Always 1 in this example.

-

Zero based rank of first processor to be used for I/O.

-

The dimension ID.

-

Array index per processing unit. This is the number of elements of the data array that will be handled by each processor. In this example there are 16 data elements. If the example is run on 4 processors, then arrIdxPerPe will be 4.

-

The ID for the parallel I/O system. It is set by PIOc_Init_Intracomm(). It references an internal structure containing the general IO subsystem data and MPI structure. It is passed to PIOc_finalize() to free associated resources, after all I/O, but before MPI_Finalize is called.

-

The ncid of the netCDF file created in this example.

-

The ID of the netCDF varable in the example file.

-

The I/O description ID as passed back by PIOc_InitDecomp() and freed in PIOc_freedecomp().

-

A buffer for sample data. The size of this array will vary depending on how many processors are involved in the execution of the example code. It's length will be the same as elements_per_pe.

-

A 1-D array which holds the decomposition mapping for this example. The size of this array will vary depending on how many processors are involved in the execution of the example code. It's length will be the same as elements_per_pe.

-

Test filename.

-

The number of netCDF flavors available in this build.

-

Used for command line processing.

-

Return value.

- -
-
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Variable Documentation

- -

◆ err_buffer

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-
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char err_buffer[MPI_MAX_ERROR_STRING]
-
- -

Global err buffer for MPI.

-

When there is an MPI error, this buffer is used to store the error message that is associated with the MPI error.

- -
-
- -

◆ resultlen

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-
- - - - -
int resultlen
-
- -

This is the length of the most recent MPI error message, stored int the global error string.

- -
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-
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-Generated on Wed May 22 2019 15:09:23 for PIO by   -doxygen - 1.8.13 -
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example2.c File Reference
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A simple C example for the ParallelIO Library. -More...

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#include <getopt.h>
-#include <stdio.h>
-#include <stdlib.h>
-#include <unistd.h>
-#include <mpi.h>
-#include <pio.h>
-#include <math.h>
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-Include dependency graph for example2.c:
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-Macros

#define NUM_NETCDF_FLAVORS   4
 The number of possible output netCDF output flavors available to the ParallelIO library. More...
 
#define NDIM   3
 The number of dimensions in the example data. More...
 
#define NUM_TIMESTEPS   6
 The number of timesteps of data to write. More...
 
#define VAR_NAME   "foo"
 The name of the variable in the netCDF output file. More...
 
#define ERR_BAD   1001
 Return code when netCDF output file does not match expectations. More...
 
#define START_DATA_VAL   42
 The meaning of life, the universe, and everything. More...
 
#define MPIERR(e)
 Handle MPI errors. More...
 
#define ERR(e)
 Handle non-MPI errors by finalizing the MPI library and exiting with an exit code. More...
 
#define NUM_EVENTS   10
 Number of MPE events. More...
 
#define X_DIM_LEN   20
 The length of our sample data along each dimension. More...
 
-#define Y_DIM_LEN   30
 
#define ERR_FILE   1
 Some error codes for when things go wrong. More...
 
-#define ERR_DUMB   2
 
-#define ERR_ARG   3
 
-#define ERR_MPI   4
 
-#define ERR_MPITYPE   5
 
-#define ERR_LOGGING   6
 
-#define ERR_UPDATE   7
 
-#define ERR_CALC   8
 
-#define ERR_COUNT   9
 
-#define ERR_WRITE   10
 
-#define ERR_SWAP   11
 
-#define ERR_INIT   12
 
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-Functions

int init_logging (int my_rank, int event_num[][NUM_EVENTS])
 This will set up the MPE logging event numbers. More...
 
int check_file (int ntasks, char *filename)
 Check the output file. More...
 
int calculate_value (int my_rank, int timestep, float *datap)
 Calculate sample data. More...
 
int main (int argc, char *argv[])
 Main execution of code. More...
 
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-Variables

char err_buffer [MPI_MAX_ERROR_STRING]
 Global err buffer for MPI. More...
 
int resultlen
 This is the length of the most recent MPI error message, stored int the global error string. More...
 
char dim_name [NDIM][PIO_MAX_NAME+1] = {"timestep", "x", "y"}
 The dimension names. More...
 
int dim_len [NDIM] = {NC_UNLIMITED, X_DIM_LEN, Y_DIM_LEN}
 Length of the dimensions in the sample data. More...
 
PIO_Offset chunksize [NDIM] = {2, X_DIM_LEN/2, Y_DIM_LEN/2}
 Length of chunksizes to use in netCDF-4 files. More...
 
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Detailed Description

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A simple C example for the ParallelIO Library.

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This example creates a netCDF output file with one 3D variable. One of the dimensions will be unlimited. The example first writes the sample file using the ParallelIO library, then reads it with the plain old netCDF library to check that it is correct.

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This example can be run in parallel for 1, 2, 4, 8, or 16 processors.

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This example uses the MPE performace profiling library, if it is present on the build machine. After the program is run, MPE will produce a file called example2.clog2. In order to see the nice graphs, execute the commands:

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-clog2ToSlog2 example2.clog2
-jumpshot example2.slog2 
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Macro Definition Documentation

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◆ ERR

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#define ERR( e)
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-Value:
do { \
fprintf(stderr, "Error %d in %s, line %d\n", e, __FILE__, __LINE__); \
MPI_Finalize(); \
return e; \
} while (0)
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Handle non-MPI errors by finalizing the MPI library and exiting with an exit code.

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◆ ERR_BAD

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#define ERR_BAD   1001
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Return code when netCDF output file does not match expectations.

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◆ ERR_FILE

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#define ERR_FILE   1
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Some error codes for when things go wrong.

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◆ MPIERR

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#define MPIERR( e)
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-Value:
do { \
MPI_Error_string(e, err_buffer, &resultlen); \
fprintf(stderr, "MPI error, line %d, file %s: %s\n", __LINE__, __FILE__, err_buffer); \
MPI_Finalize(); \
return 2; \
} while (0)
resultlen
int resultlen
This is the length of the most recent MPI error message, stored int the global error string...
Definition: example2.c:92
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err_buffer
char err_buffer[MPI_MAX_ERROR_STRING]
Global err buffer for MPI.
Definition: example2.c:88
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Handle MPI errors.

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This should only be used with MPI library function calls.

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◆ NDIM

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#define NDIM   3
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The number of dimensions in the example data.

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In this example, we are using three-dimensional data.

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◆ NUM_EVENTS

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#define NUM_EVENTS   10
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Number of MPE events.

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The start and stop of each event will be tracked, and graphed. This value is used outside of HAVE_MPE ifdefs.

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◆ NUM_NETCDF_FLAVORS

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#define NUM_NETCDF_FLAVORS   4
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The number of possible output netCDF output flavors available to the ParallelIO library.

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◆ NUM_TIMESTEPS

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#define NUM_TIMESTEPS   6
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The number of timesteps of data to write.

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◆ START_DATA_VAL

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#define START_DATA_VAL   42
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The meaning of life, the universe, and everything.

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◆ VAR_NAME

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#define VAR_NAME   "foo"
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The name of the variable in the netCDF output file.

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◆ X_DIM_LEN

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#define X_DIM_LEN   20
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The length of our sample data along each dimension.

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There will be a total of 16 integers in each timestep of our data, and responsibilty for writing and reading them will be spread between all the processors used to run this example.

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Function Documentation

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◆ calculate_value()

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int calculate_value (int my_rank,
int timestep,
float * datap 
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Calculate sample data.

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This function is deliberately slow in order to take up some time calculating.

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my_rankthe rank of the processor running the code.
timestepthe timestep.
datappointer where we should write datum.
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Returns
zero for success, non-zero otherwise.
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◆ check_file()

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int check_file (int ntasks,
char * filename 
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Check the output file.

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Use netCDF to check that the output is as expected.

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Parameters
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ntasksThe number of processors running the example.
filenameThe name of the example file to check.
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Returns
0 if example file is correct, non-zero otherwise.
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< File ID from netCDF.

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< Number of dimensions.

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< Number of variables.

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< Number of global attributes.

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< ID of unlimited dimension.

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< Length of the dimension.

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< Number of variable attributes.

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< NetCDF data type of this variable.

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< Return code for function calls.

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< Dimension ids for this variable.

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< Name of the dimension.

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< Name of the variable.

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< Zero-based index to start read.

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< Number of elements to read.

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< Buffer to read in data.

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< Data values we expect to find.

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◆ init_logging()

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int init_logging (int my_rank,
int event_num[][NUM_EVENTS] 
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This will set up the MPE logging event numbers.

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Parameters
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my_rankthe rank of the processor running the code.
event_numarray of MPE event numbers.
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0 for success, non-zero for failure.
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◆ main()

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int main (int argc,
char * argv[] 
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Main execution of code.

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Executes the functions to:

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  • create a new examplePioClass instance
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  • initialize MPI and the ParallelIO libraries
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  • create the decomposition for this example
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  • create the netCDF output file
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  • define the variable in the file
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  • write data to the variable in the file using decomposition
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  • read the data back from the file using decomposition
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  • close the file
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  • clean up resources
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The example can be run from the command line (on system that support it) like this: 

-mpiexec -n 4 ./examplePio
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The sample file created by this program is a small netCDF file. It has the following contents (as shown by ncdump) for a 4-processor run:

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-netcdf examplePio_c {
-dimensions:
-x = 16 ;
-variables:
-int foo(x) ;
-data:
foo = 42, 42, 42, 42, 43, 43, 43, 43, 44, 44, 44, 44, 45, 45, 45, 45 ;
-}
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Parameters
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[in]argcargument count (should be zero)
[in]argvargument array (should be NULL)
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Return values
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examplePioClass*Pointer to self.
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Set to non-zero to get output to stdout.

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Zero-based rank of processor.

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Number of processors involved in current execution.

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Different output flavors. The example file is written (and then read) four times. The first two flavors, parallel-netcdf, and netCDF serial, both produce a netCDF classic format file (but with different libraries). The last two produce netCDF4/HDF5 format files, written with and without using netCDF-4 parallel I/O.

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Names for the output files. Two of them (pnetcdf and classic) will be in classic netCDF format, the others (serial4 and parallel4) will be in netCDF-4/HDF5 format. All four can be read by the netCDF library, and all will contain the same contents.

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Number of processors that will do IO. In this example we will do IO from all processors.

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Stride in the mpi rank between io tasks. Always 1 in this example.

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Number of the aggregator? Always 0 in this example.

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Zero based rank of first processor to be used for I/O.

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Specifies the flavor of netCDF output format.

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The dimension IDs.

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Array index per processing unit. This is the number of elements of the data array that will be handled by each processor. In this example there are 16 data elements. If the example is run on 4 processors, then arrIdxPerPe will be 4.

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The ID for the parallel I/O system. It is set by PIOc_Init_Intracomm(). It references an internal structure containing the general IO subsystem data and MPI structure. It is passed to PIOc_finalize() to free associated resources, after all I/O, but before MPI_Finalize is called.

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The ncid of the netCDF file created in this example.

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The ID of the netCDF varable in the example file.

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The I/O description ID as passed back by PIOc_InitDecomp() and freed in PIOc_freedecomp().

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A buffer for sample data. The size of this array will vary depending on how many processors are involved in the execution of the example code. It's length will be the same as elements_per_pe.

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A buffer for reading data back from the file. The size of this array will vary depending on how many processors are involved in the execution of the example code. It's length will be the same as elements_per_pe.

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A 1-D array which holds the decomposition mapping for this example. The size of this array will vary depending on how many processors are involved in the execution of the example code. It's length will be the same as elements_per_pe.

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Needed for command line processing.

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Variable Documentation

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◆ chunksize

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PIO_Offset chunksize[NDIM] = {2, X_DIM_LEN/2, Y_DIM_LEN/2}
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Length of chunksizes to use in netCDF-4 files.

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◆ dim_len

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int dim_len[NDIM] = {NC_UNLIMITED, X_DIM_LEN, Y_DIM_LEN}
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Length of the dimensions in the sample data.

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◆ dim_name

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char dim_name[NDIM][PIO_MAX_NAME+1] = {"timestep", "x", "y"}
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The dimension names.

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◆ err_buffer

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char err_buffer[MPI_MAX_ERROR_STRING]
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Global err buffer for MPI.

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When there is an MPI error, this buffer is used to store the error message that is associated with the MPI error.

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◆ resultlen

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int resultlen
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This is the length of the most recent MPI error message, stored int the global error string.

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-Generated on Wed May 22 2019 15:09:23 for PIO by   -doxygen - 1.8.13 -
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examplePio.c File Reference
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A simple C example for the ParallelIO Library. -More...

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#include "config.h"
-#include <getopt.h>
-#include <stdio.h>
-#include <stdlib.h>
-#include <unistd.h>
-#include <mpi.h>
-#include <pio.h>
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-Include dependency graph for examplePio.c:
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-Typedefs

typedef struct examplePioClass examplePioClass
 Holds code and data for this example. More...
 
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-Functions

struct examplePioClass * epc_init (struct examplePioClass *this)
 Initialize libraries, create sample data. More...
 
struct examplePioClass * epc_createDecomp (struct examplePioClass *this)
 Create the decomposition. More...
 
struct examplePioClass * epc_createFile (struct examplePioClass *this)
 Create the netCDF file. More...
 
struct examplePioClass * epc_defineVar (struct examplePioClass *this)
 Define netCDF metadata. More...
 
struct examplePioClass * epc_writeVar (struct examplePioClass *this)
 Write the sample data to the file. More...
 
struct examplePioClass * epc_readVar (struct examplePioClass *this)
 Read the example data from the file. More...
 
struct examplePioClass * epc_closeFile (struct examplePioClass *this)
 Closes the netCDF file. More...
 
struct examplePioClass * epc_cleanUp (struct examplePioClass *this)
 Clean up allocated resources. More...
 
struct examplePioClass * epc_errorHandler (struct examplePioClass *this, const char *errMsg, const int retVal)
 Error handling function. More...
 
struct examplePioClass * epc_new (int verbose)
 Create an examplePioClass object. More...
 
int main (int argc, char *argv[])
 Main execution of code. More...
 
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Detailed Description

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A simple C example for the ParallelIO Library.

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This example creates a netCDF output file with one dimension and one variable. It first writes, then reads the sample file using the ParallelIO library.

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This example can be run in parallel for 1, 2, 4, 8, or 16 processors.

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Typedef Documentation

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◆ examplePioClass

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typedef struct examplePioClass examplePioClass
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Holds code and data for this example.

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This struct stores pointers to the functions used in the example, and all the data values needed to run the example code.

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Function Documentation

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◆ epc_cleanUp()

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struct examplePioClass* epc_cleanUp (struct examplePioClass * this)
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Clean up allocated resources.

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This function frees the memory used in this example. It calls the ParallelIO library function PIOc_freedecomp() to free decomposition resources. Then calles PIOc_finalize() and MPI_finalize() to free library resources.

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Parameters
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[in]thisPointer to self.
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◆ epc_closeFile()

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struct examplePioClass* epc_closeFile (struct examplePioClass * this)
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Closes the netCDF file.

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Uses the PIOc_closefile() function to close the netCDF sample file written by this example.

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Parameters
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[in]thisPointer to self.
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examplePioClass*Pointer to self.
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◆ epc_createDecomp()

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struct examplePioClass* epc_createDecomp (struct examplePioClass * this)
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Create the decomposition.

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This function is called as part of the creation of a sample data file for this example.

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Uses PIOc_InitDecomp() to initalize the decomposition for this example. The arguments are:

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  • the ID of the IO system, obtained from PIOc_init_intracomm().
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  • the NetCDF type of the sample data - in this case a 4-byte integer.
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  • the number of dimensions (1).
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  • the lengths of the dimensions.
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  • the number of data elements assigned to each processor.
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  • the array which provides the decomposition mapping.
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  • the IO description pointer.
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  • the ParallelIO rearranger (we are providing NULL here to get the default arranger).
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  • optional array of start values for block cyclic decompositions (NULL means don't use block cyclical decompositions).
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  • optional array of count values for block cyclic decompositions (NULL means don't use block cyclical decompositions).
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The decomposition mapping array (called compdof, in this example code), contains a 1 based array of offsets into the array record on file. For this example, the compdof array will have the following sizes and values, depending on number of processors used.

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For one processor the decomposition array looks like this (note that the array is 1-based):

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-rank: 0 length: 16 [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16]
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For two processors, the decomposition array looks like this on each processor:

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-rank: 0 length: 8 [1, 2, 3, 4, 5, 6, 7, 8]
-rank: 1 length: 8 [9, 10, 11, 12, 13, 14, 15, 16]
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For four processors, the decomposition arrays are:

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-rank: 0 length: 4 [1, 2, 3, 4]
-rank: 1 length: 4 [5, 6, 7, 8]
-rank: 2 length: 4 [9, 10, 11, 12]
-rank: 3 length: 4 [13, 14, 15, 16]
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Parameters
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[in]thisPointer to self.
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examplePioClass*Pointer to self.
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◆ epc_createFile()

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struct examplePioClass* epc_createFile (struct examplePioClass * this)
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Create the netCDF file.

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This function is called as part of the creation of a sample data file for this example.

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Uses the function PIOc_createfile() to create the netCDF output file. The format of the file is created in accordance with the iotype member variable, which specifies one of the following values:

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  • PIO_IOTYPE_PNETCDF=1 Parallel Netcdf (parallel)
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  • PIO_IOTYPE_NETCDF=2 Netcdf3 Classic format (serial)
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  • PIO_IOTYPE_NETCDF4C=3 NetCDF4 (HDF5) compressed format (serial)
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The PIOc_createfile() function has the following parameters:

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  • A pointer which will get the ncid of this file when it is created.
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  • The iotype (one of the values listed above).
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  • the name of the sample file.
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  • the NetCDF file creating mode, PIO_CLOBBER means overwrite any existing file with this name.
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[in]thisPointer to self.
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examplePioClass*Pointer to self.
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◆ epc_defineVar()

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struct examplePioClass* epc_defineVar (struct examplePioClass * this)
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Define netCDF metadata.

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This function is called as part of the creation of a sample data file for this example.

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It defines a dimension and a one-dimensional variable in the netCDF file using functions PIOc_def_dim() and PIOc_def_var(). It then calls PIOc_enddef() to end the define mode of the file.

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All of the functions take the pioFileDesc returned by PIOc_createfile(). This is the ncid of the netCDF file.

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[in]thisPointer to self.
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examplePioClass*Pointer to self.
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◆ epc_errorHandler()

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struct examplePioClass* epc_errorHandler (struct examplePioClass * this,
const char * errMsg,
const int retVal 
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Error handling function.

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On error, process with rank zero will print error message, the netCDF file will be closed with PIOc_closefile(), and MPI_Abort is called to end the example execution on all processes.

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[in]thisPointer to self.
[in]errMsgan error message
[in]retValthe non-zero return value that indicated an error
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◆ epc_init()

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struct examplePioClass* epc_init (struct examplePioClass * this)
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Initialize libraries, create sample data.

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This function is called as part of the creation of a sample data file for this example.

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Ths funtion initializes MPI and the ParallelIO libraries. It sets up the ParallelIO library communicator. It also allocates memory for data used in this example, and assigns sample values to the data array that will be written.

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The ParallelIO communicator is set up with a call to PIOc_Init_Intracomm(). This call takes the following parameters:

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  • The MPI communicator specifying the invovled processors (MPI_COMM_WORLD, in this case, to use all processors).
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  • The number of I/O tasks. In this example there will be one I/O task for each process.
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  • The stride (1 in this case).
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  • The index of the first I/O task.
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  • The iotype, specifying the flavor of netCDF to use.
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  • Specify the subset rearranger.
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  • A pointer that will get the ID of the ParallelIO system created for this call. This ID will be needed when reading or writing to the file using the ParallelIO library.
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[in]thisPointer to self.
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◆ epc_new()

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struct examplePioClass* epc_new (int verbose)
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Create an examplePioClass object.

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This function allocates memory for the struct that contains the code and data for this example. Then pointers are to the functions used in the example.

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[in]verboseNon-zero for output to stdout.
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◆ epc_readVar()

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struct examplePioClass* epc_readVar (struct examplePioClass * this)
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Read the example data from the file.

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This function is called as part of the creation of a sample data file for this example.

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This function reads the data that has been written to the sample data file. The data are read with the PIOc_read_darray() function.

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[in]thisPointer to self.
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◆ epc_writeVar()

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struct examplePioClass* epc_writeVar (struct examplePioClass * this)
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Write the sample data to the file.

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This function is called as part of the creation of a sample data file for this example.

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The data are written with the PIOc_write_darray() function. After the write is complete, ensure the file is synced for all processes after the write.

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[in]thisPointer to self.
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◆ main()

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int main (int argc,
char * argv[] 
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Main execution of code.

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Executes the functions to:

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  • create a new examplePioClass instance
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  • initialize MPI and the ParallelIO libraries
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  • create the decomposition for this example
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  • create the netCDF output file
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  • define the variable in the file
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  • write data to the variable in the file using decomposition
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  • read the data back from the file using decomposition
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  • close the file
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  • clean up resources
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The example can be run from the command line (on system that support it) like this: 

-mpiexec -n 4 ./examplePio
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The sample file created by this program is a small netCDF file. It has the following contents (as shown by ncdump) for a 4-processor run:

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-netcdf examplePio_c {
-dimensions:
-    x = 16 ;
-variables:
-    int foo(x) ;
-data:
    foo = 42, 42, 42, 42, 43, 43, 43, 43, 44, 44, 44, 44, 45, 45, 45, 45 ;
-}
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Parameters
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[in]argcargument count (should be zero)
[in]argvargument array (should be NULL)
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examplePioClass*Pointer to self.
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-Generated on Wed May 22 2019 15:09:23 for PIO by   -doxygen - 1.8.13 -
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    A simple Fortran example for the ParallelIO Library. -More...

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    type  pioexample::pioexampleclass
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    subroutine pioexample::init (this)
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    program main
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    Detailed Description

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    Initialize the MPI and ParallelIO libraries. Also allocate memory to write and read the sample data to the netCDF file.

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    This is an example program for the ParallelIO library.

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    This program creates a netCDF output file with the ParallelIO library, then writes and reads some data to and from the file.

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    • -In the init_intracom interface, use the num_iotasks and stride variables to specify the total number of io tasks and the stride between them with respect to the mpi communicator, comp_comm, which is provided. You can also use the optional base argument to shift the first IO task away from the first computational task, this is often desirable because the applications first computational task often has higher memory requirements than other tasks. IO tasks are a subset of the tasks defined in comp_comm.
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    The PIO Library distribution contains tests for PIO. They are run my 'make check'. The tests use mpiexec to run tests on 4, 8, or 16 processors.

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     example1.cA simple C example for the ParallelIO Library
     example2.cA simple C example for the ParallelIO Library
     examplePio.cA simple C example for the ParallelIO Library
     examplePio.f90A simple Fortran example for the ParallelIO Library
     pio.F90User interface Module for PIO, this is the only file a user program should 'use'
     pio.hPublic headers for the PIO C interface
     pio_darray.cPublic functions that read and write distributed arrays in PIO
     pio_file.cPIO File Handling
     pio_get_nc.cPIO functions to get data
     pio_kinds.F90Basic data types
     pio_nc.cPIO interfaces to NetCDF support functions
     pio_nc4.cFunctions to wrap netCDF-4 functions for PIO
     pio_put_nc.cPIO functions to write data
     pio_support.F90Internal code for compiler workarounds, aborts and debug functions
     pio_types.F90Derived datatypes and constants for PIO Fortran API
     pioc.cSome initialization and support functions
     pioc_support.cSupport functions for the PIO library
     piodarray.f90Read and write routines for decomposed data
     piolib_mod.f90Initialization Routines for PIO
     pionfatt_mod_2.f90NetCDF attribute interface to PIO
     pionfget_mod_2.f90Read Routines for non-decomposed NetCDF data
     pionfput_mod.f90Write routines for non-decomposed NetCDF data
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    /*! Invisible class because of truncation */
    class Invisible { };
    /*! Truncated class, inheritance relation is hidden */
    class Truncated : public Invisible { };
    /* Class not documented with doxygen comments */
    class Undocumented { };
    /*! Class that is inherited using public inheritance */
    class PublicBase : public Truncated { };
    /*! A template class */
    template<class T> class Templ { };
    /*! Class that is inherited using protected inheritance */
    class ProtectedBase { };
    /*! Class that is inherited using private inheritance */
    class PrivateBase { };
    /*! Class that is used by the Inherited class */
    class Used { };
    /*! Super class that inherits a number of other classes */
    class Inherited : public PublicBase,
    protected ProtectedBase,
    private PrivateBase,
    public Undocumented,
    public Templ<int>
    {
    private:
    Used *m_usedClass;
    };

    This will result in the following graph:

    -
    - -
    -

    The boxes in the above graph have the following meaning:

    -
      -
    • -A filled gray box represents the struct or class for which the graph is generated.
      • -
    • -A box with a black border denotes a documented struct or class.
      • -
    • -A box with a gray border denotes an undocumented struct or class.
      • -
    • -A box with a red border denotes a documented struct or class forwhich not all inheritance/containment relations are shown. A graph is truncated if it does not fit within the specified boundaries.
      • -
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    The arrows have the following meaning:

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    • -A dark blue arrow is used to visualize a public inheritance relation between two classes.
      • -
    • -A dark green arrow is used for protected inheritance.
      • -
    • -A dark red arrow is used for private inheritance.
      • -
    • -A purple dashed arrow is used if a class is contained or used by another class. The arrow is labelled with the variable(s) through which the pointed class or struct is accessible.
      • -
    • -A yellow dashed arrow denotes a relation between a template instance and the template class it was instantiated from. The arrow is labelled with the template parameters of the instance.
      • -
    -
    - -
    -Generated on Wed May 22 2019 15:09:23 for PIO by   -doxygen - 1.8.13 -
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    subroutine piolib_mod::advanceframe (file, vardesc)
     advances the record dimension of a variable in a netcdf format file or the block address in a binary file More...
     
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    ◆ advanceframe()

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    subroutine piolib_mod::advanceframe (type(file_desc_t), intent(in) file,
    type(var_desc_t), intent(inout) vardesc 
    )
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    advances the record dimension of a variable in a netcdf format file or the block address in a binary file

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    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
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    subroutine piolib_mod::closefile (file)
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    int PIOc_createfile_int (int iosysid, int *ncidp, int *iotype, const char *filename, int mode)
     Create a new file using pio. More...
     
    integer function piolib_mod::createfile (iosystem, file, iotype, fname, amode_in)
     Create a NetCDF or PNetCDF file using PIO. More...
     
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    integer function piolib_mod::createfile (type (iosystem_desc_t), intent(inout), target iosystem,
    type (file_desc_t), intent(out) file,
    integer, intent(in) iotype,
    character(len=*), intent(in) fname,
    integer, intent(in), optional amode_in 
    )
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    Create a NetCDF or PNetCDF file using PIO.

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    Input parameters are read on comp task 0 and ignored elsewhere

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    iosystem: A defined pio system descriptor created by a call to PIO_init (see PIO_types)
    file: The returned file descriptor
    iotype: An integer parameter which controls the iotype.
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    • PIO_iotype_pnetcdf : parallel read/write of pNetCDF files (netcdf3)
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    fname: The name of the file to open
    amode_in: The NetCDF creation mode flag. the following flags are available: (1) zero value or NC_NOWRITE is default and opens the file with read-only access. (2) NC_WRITE for read-write access. (3) NC_SHARE is used for NetCDF classic, and dangerous with this application. (4) NC_WRITE|NC_SHARE
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    int * iotype,
    const char * filename,
    int mode 
    )
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    Create a new file using pio.

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    iosysidA defined pio system ID, obtained from PIOc_Init_Intracomm() or PIOc_InitAsync().
    ncidpA pointer that gets the ncid of the newly created file.
    iotypeA pointer to a pio output format. Must be one of PIO_IOTYPE_PNETCDF, PIO_IOTYPE_NETCDF, PIO_IOTYPE_NETCDF4C, or PIO_IOTYPE_NETCDF4P.
    filenameThe filename to create.
    modeThe netcdf mode for the create operation.
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    integer function pio_nf::def_dim_int_desc (File, name, len, dimid)
     Defines the netcdf dimension. More...
     
    integer function pio_nf::def_dim_int_id (ncid, name, len, dimid)
     Defines the netcdf dimension. More...
     
    integer function pio_nf::def_dim_desc (File, name, len, dimid)
     Defines the netcdf dimension. More...
     
    integer function pio_nf::def_dim_id (ncid, name, len, dimid)
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    integer function pio_nf::def_dim_desc (type (file_desc_t), intent(in) File,
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    integer, intent(out) dimid 
    )
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    Defines the netcdf dimension.

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    integer, intent(out) dimid 
    )
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    Defines the netcdf dimension.

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    integer function pio_nf::def_dim_int_desc (type (file_desc_t), intent(in) File,
    character(len=*), intent(in) name,
    integer, intent(in) len,
    integer, intent(out) dimid 
    )
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    Defines the netcdf dimension.

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    FileFile descriptor structure. This structure holds information associated with each open file
    name: The name of the dimension to define
    len: The size of the dimension
    dimid: The dimension identifier
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    integer function pio_nf::def_dim_int_id (integer, intent(in) ncid,
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    integer, intent(in) len,
    integer, intent(out) dimid 
    )
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    Defines the netcdf dimension.

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    integer function pio_nf::def_var_0d_desc (File, name, type, vardesc)
     Defines a netcdf variable. More...
     
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     Defines a netcdf variable.
     
    integer function pio_nf::def_var_md_desc (File, name, type, dimids, vardesc)
     Defines the a netcdf variable. More...
     
    -integer function pio_nf::def_var_md_id (ncid, name, type, dimids, varid)
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    integer function pio_nf::def_var_0d_desc (type (file_desc_t), intent(in) File,
    character(len=*), intent(in) name,
    integer, intent(in) type,
    type (var_desc_t), intent(inout) vardesc 
    )
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    Defines a netcdf variable.

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    FileFile descriptor structure. This structure holds information associated with each open file
    name: The name of the variable to define
    type: The type of variable
    vardescVariable description structure.
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    integer function pio_nf::def_var_md_desc (type (file_desc_t), intent(in) File,
    character(len=*), intent(in) name,
    integer, intent(in) type,
    integer, dimension(:), intent(in) dimids,
    type (var_desc_t), intent(inout) vardesc 
    )
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    Defines the a netcdf variable.

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    FileFile descriptor structure. This structure holds information associated with each open file
    name: The name of the variable to define
    type: The type of variable
    dimids: The dimension identifier returned by PIO_def_dim
    vardescVariable description structure.
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    integer function pio_nf::enddef_desc (File)
     Exits netcdf define mode. More...
     
    integer function pio_nf::enddef_id (ncid)
     Wrapper for the C function PIOc_enddef . More...
     
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    ◆ enddef_desc()

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    Exits netcdf define mode.

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    FileFile descriptor structure. This structure holds information associated with each open file
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    Wrapper for the C function PIOc_enddef .

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    subroutine piolib_mod::finalize (iosystem, ierr)
     finalizes the pio subsystem. More...
     
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    Shuts down and cleans up any memory associated with the pio library.

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    ◆ finalize()

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    integer(i4), intent(out) ierr 
    )
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    finalizes the pio subsystem.

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    This is a collective call which expects the following parameters

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    iosystem: IO descriptor structure. This structure defines the mapping for a given variable between compute and IO decomposition.
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    subroutine piolib_mod::freedecomp_ios (ios, iodesc)
     free all allocated storage associated with this decomposition More...
     
    subroutine piolib_mod::freedecomp_file (file, iodesc)
     free all allocated storage associated with this decomposition More...
     
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    subroutine piolib_mod::freedecomp_file (type (file_desc_t) file,
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    )
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    free all allocated storage associated with this decomposition

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    fileFile descriptor structure. This structure holds information associated with each open file
    iodesc: IO descriptor structure. This structure defines the mapping for a given variable between compute and IO decomposition.
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    )
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    free all allocated storage associated with this decomposition

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    ios: a defined pio system descriptor created by call to PIO_init (see PIO_types)
    iodescIO descriptor structure. This structure defines the mapping for a given variable between compute and IO decomposition.
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    integer function pionfatt_mod::get_att_desc_text (File, varDesc, name, values)
     Reads an netcdf attribute from a file. More...
     
    integer function pionfatt_mod::get_att_desc_1d_int (File, varDesc, name, values)
     Reads an netcdf attribute from a file. More...
     
    integer function pionfatt_mod::get_att_id_int (ncid, varid, name, values)
     Reads an netcdf attribute from a file. More...
     
    integer function pionfatt_mod::get_att_1d_real (File, varid, name, values)
     Reads an netcdf attribute from a file. More...
     
    integer function pionfatt_mod::get_att_1d_int (File, varid, name, values)
     Reads an netcdf attribute from a file. More...
     
    integer function pionfatt_mod::get_att_1d_double (File, varid, name, values)
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    integer(i4), intent(in) varid,
    character(len=*), intent(in) name,
    real(r8), dimension(:), intent(out) values 
    )
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    Reads an netcdf attribute from a file.

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    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to get
    values: The value for the netcdf attribute
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    integer function pionfatt_mod::get_att_1d_int (type (file_desc_t), intent(in), target File,
    integer(i4), intent(in) varid,
    character(len=*), intent(in) name,
    integer(i4), dimension(:), intent(out) values 
    )
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    Reads an netcdf attribute from a file.

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    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to get
    values: The value for the netcdf attribute
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ get_att_1d_real()

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    integer function pionfatt_mod::get_att_1d_real (type (file_desc_t), intent(in), target File,
    integer(i4), intent(in) varid,
    character(len=*), intent(in) name,
    real(r4), dimension(:), intent(out) values 
    )
    -
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    Reads an netcdf attribute from a file.

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    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to get
    values: The value for the netcdf attribute
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ get_att_desc_1d_int()

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    integer function pionfatt_mod::get_att_desc_1d_int (type (file_desc_t), intent(inout), target File,
    type (var_desc_t), intent(in) varDesc,
    character(len=*), intent(in) name,
    integer(i4), dimension(:), intent(out) values 
    )
    -
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    Reads an netcdf attribute from a file.

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    FileFile descriptor structure. This structure holds information associated with each open file
    varDescVariable description structure.
    name: name of the attribute to get
    values: The value for the netcdf attribute
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ get_att_desc_text()

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    integer function pionfatt_mod::get_att_desc_text (type (file_desc_t), intent(inout), target File,
    type (var_desc_t), intent(in) varDesc,
    character(len=*), intent(in) name,
    character(len=*), intent(out) values 
    )
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    Reads an netcdf attribute from a file.

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    Parameters
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    FileFile descriptor structure. This structure holds information associated with each open file
    varDescVariable description structure.
    name: name of the attribute to get
    values: The value for the netcdf attribute
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    integer function pionfatt_mod::get_att_id_int (integer, intent(in) ncid,
    integer, intent(in) varid,
    character(len=*), intent(in) name,
    integer(i4), intent(out), target values 
    )
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    Reads an netcdf attribute from a file.

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    ncid: The netcdf file ID
    varid: The netcdf variable identifier
    name: name of the attribute to get
    values: The value for the netcdf attribute
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    integer function, public piolib_mod::pio_get_local_array_size (iodesc)
     This function returns the expected local size of an array associated with iodesc. More...
     
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    ◆ pio_get_local_array_size()

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    integer function, public piolib_mod::pio_get_local_array_size (type(io_desc_t), intent(in) iodesc)
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    integer function pionfget_mod::get_var1_text (File, varid, index, ival)
     Reads non-decomposed fields from a NetCDF file. More...
     
    integer function pionfget_mod::get_var1_vdesc_text (File, vardesc, index, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_1d_int (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_2d_int (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_3d_int (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_4d_int (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_5d_int (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_1d_real (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_2d_real (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_3d_real (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_4d_real (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_5d_real (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_1d_double (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_2d_double (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_3d_double (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_4d_double (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_5d_double (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_1d_text (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_2d_text (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_3d_text (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_4d_text (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_5d_text (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_1d_real (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_2d_real (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_3d_real (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_4d_real (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_5d_real (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_1d_double (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_2d_double (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_3d_double (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_4d_double (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_5d_double (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_1d_int (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_2d_int (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_3d_int (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_4d_int (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_5d_int (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_var_0d_text (File, varid, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_var_vdesc_0d_text (File, vardesc, ival)
     Writes an netcdf attribute to a file. More...
     
    -

    Detailed Description

    -

    Reads non-decomposed data from a NetCDF file.

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    The get_var interface is provided as a simplified interface to read variables from a NetCDF format file. The variable is read on the root IO task and broadcast in its entirety to all tasks.

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    Function/Subroutine Documentation

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    ◆ get_var1_text()

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    integer function pionfget_mod::get_var1_text (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) index,
    character(len=*), intent(out) ival 
    )
    -
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    Reads non-decomposed fields from a NetCDF file.

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    Parameters
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    Filefile_desc_t
    varid: The netcdf variable identifier
    index: a multidimensional index that specifies which value to get
    ival: The value for the netcdf metadata
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    ◆ get_var1_vdesc_text()

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    integer function pionfget_mod::get_var1_vdesc_text (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) index,
    character(len=*), intent(out) ival 
    )
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    Writes an netcdf attribute to a file.

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    Filefile_desc_t
    vardescvar_desc_t
    index: a multidimensional index that specifies which value to get
    ival: The value for the netcdf metadata
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    ◆ get_var_0d_text()

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    integer function pionfget_mod::get_var_0d_text (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    character(len=*), intent(out) ival 
    )
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    Writes an netcdf attribute to a file.

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    Filefile_desc_t
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    ◆ get_var_vdesc_0d_text()

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    integer function pionfget_mod::get_var_vdesc_0d_text (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    character(len=*), intent(out) ival 
    )
    -
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    Writes an netcdf attribute to a file.

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    Filefile_desc_t
    vardescvar_desc_t
    ival: The value for the netcdf metadata
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    ◆ get_vara_1d_double()

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    integer function pionfget_mod::get_vara_1d_double (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:), intent(out) ival 
    )
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    Writes an netcdf attribute to a file.

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    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    ◆ get_vara_1d_int()

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    integer function pionfget_mod::get_vara_1d_int (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:), intent(out) ival 
    )
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    Writes an netcdf attribute to a file.

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    Parameters
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    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    ◆ get_vara_1d_real()

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    integer function pionfget_mod::get_vara_1d_real (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:), intent(out) ival 
    )
    -
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    Writes an netcdf attribute to a file.

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    Parameters
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    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    ◆ get_vara_2d_double()

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    integer function pionfget_mod::get_vara_2d_double (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

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    Parameters
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    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    ◆ get_vara_2d_int()

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    integer function pionfget_mod::get_vara_2d_int (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    ◆ get_vara_2d_real()

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    integer function pionfget_mod::get_vara_2d_real (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    Return values
    - - -
    ierrerror return codes
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    ◆ get_vara_3d_double()

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    integer function pionfget_mod::get_vara_3d_double (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_3d_int()

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    integer function pionfget_mod::get_vara_3d_int (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_3d_real()

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    integer function pionfget_mod::get_vara_3d_real (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_4d_double()

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    integer function pionfget_mod::get_vara_4d_double (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_4d_int()

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    integer function pionfget_mod::get_vara_4d_int (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_4d_real()

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    integer function pionfget_mod::get_vara_4d_real (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_5d_double()

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    integer function pionfget_mod::get_vara_5d_double (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_5d_int()

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    integer function pionfget_mod::get_vara_5d_int (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_5d_real()

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    integer function pionfget_mod::get_vara_5d_real (type (file_desc_t), intent(in) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varid: The netcdf variable identifier
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_vdesc_1d_double()

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    integer function pionfget_mod::get_vara_vdesc_1d_double (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_vdesc_1d_int()

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    integer function pionfget_mod::get_vara_vdesc_1d_int (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_vdesc_1d_real()

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    integer function pionfget_mod::get_vara_vdesc_1d_real (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_vdesc_1d_text()

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    integer function pionfget_mod::get_vara_vdesc_1d_text (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_vdesc_2d_double()

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    integer function pionfget_mod::get_vara_vdesc_2d_double (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_vdesc_2d_int()

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    integer function pionfget_mod::get_vara_vdesc_2d_int (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
    -
    -
    - -
    -
    - -

    ◆ get_vara_vdesc_2d_real()

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    integer function pionfget_mod::get_vara_vdesc_2d_real (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    -
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    Return values
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    ierrerror return codes
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    ◆ get_vara_vdesc_2d_text()

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    integer function pionfget_mod::get_vara_vdesc_2d_text (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

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    Parameters
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    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    Return values
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    ierrerror return codes
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    ◆ get_vara_vdesc_3d_double()

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    integer function pionfget_mod::get_vara_vdesc_3d_double (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

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    Parameters
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    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    Return values
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    ierrerror return codes
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    ◆ get_vara_vdesc_3d_int()

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    integer function pionfget_mod::get_vara_vdesc_3d_int (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:,:), intent(out) ival 
    )
    -
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    Writes an netcdf attribute to a file.

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    Parameters
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    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    Return values
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    ierrerror return codes
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    ◆ get_vara_vdesc_3d_real()

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    integer function pionfget_mod::get_vara_vdesc_3d_real (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    Return values
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    ierrerror return codes
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    ◆ get_vara_vdesc_3d_text()

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    integer function pionfget_mod::get_vara_vdesc_3d_text (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    Return values
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    ierrerror return codes
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    ◆ get_vara_vdesc_4d_double()

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    integer function pionfget_mod::get_vara_vdesc_4d_double (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierrerror return codes
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    ◆ get_vara_vdesc_4d_int()

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    integer function pionfget_mod::get_vara_vdesc_4d_int (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
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    Return values
    - - -
    ierrerror return codes
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    ◆ get_vara_vdesc_4d_real()

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    integer function pionfget_mod::get_vara_vdesc_4d_real (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    ierrerror return codes
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    ◆ get_vara_vdesc_4d_text()

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    integer function pionfget_mod::get_vara_vdesc_4d_text (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
    -
    -
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    Return values
    - - -
    ierrerror return codes
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    ◆ get_vara_vdesc_5d_double()

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    integer function pionfget_mod::get_vara_vdesc_5d_double (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    ierrerror return codes
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    ◆ get_vara_vdesc_5d_int()

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    integer function pionfget_mod::get_vara_vdesc_5d_int (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    ◆ get_vara_vdesc_5d_real()

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    integer function pionfget_mod::get_vara_vdesc_5d_real (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

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    Parameters
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    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    ◆ get_vara_vdesc_5d_text()

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    integer function pionfget_mod::get_vara_vdesc_5d_text (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:,:,:,:,:), intent(out) ival 
    )
    -
    - -

    Writes an netcdf attribute to a file.

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    vardescvar_desc_t
    start: A vector of size_t integers specifying the index in the variable where the first of the data values will be read. The indices are relative to 0, so for example, the first data value of a variable would have index (0, 0, ... , 0). The length of start must be the same as the number of dimensions of the specified variable. The elements of start correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first index would correspond to the starting record number for reading the data values.
    count: A vector of size_t integers specifying the edge lengths along each dimension of the block of data values to be read. To read a single value, for example, specify count as (1, 1, ... , 1). The length of count is the number of dimensions of the specified variable. The elements of count correspond, in order, to the variable's dimensions. Hence, if the variable is a record variable, the first element of count corresponds to a count of the number of records to read. Note: setting any element of the count array to zero causes the function to exit without error, and without doing anything.
    ival: The value for the netcdf metadata
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    subroutine piolib_mod::getnumiotasks (iosystem, numiotasks)
     This returns the number of IO-tasks that PIO is using. More...
     
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    ◆ getnumiotasks()

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    subroutine piolib_mod::getnumiotasks (type (iosystem_desc_t), intent(in) iosystem,
    integer(i4), intent(out) numiotasks 
    )
    -
    - -

    This returns the number of IO-tasks that PIO is using.

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    Parameters
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    iosystem: a defined pio system descriptor, see PIO_types
    numiotasks: the number of IO-tasks
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    subroutine piolib_mod::init_intracom (comp_rank, comp_comm, num_iotasks, num_aggregator, stride, rearr, iosystem, base, rearr_opts)
     initialize the pio subsystem. More...
     
    subroutine piolib_mod::init_intercom (component_count, peer_comm, comp_comms, io_comm, iosystem)
     Initialize the pio subsystem. More...
     
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    Detailed Description

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    initializes the pio subsystem

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    Function/Subroutine Documentation

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    ◆ init_intercom()

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    subroutine piolib_mod::init_intercom (integer, intent(in) component_count,
    integer, intent(in) peer_comm,
    integer, dimension(component_count), intent(in) comp_comms,
    integer, intent(in) io_comm,
    type (iosystem_desc_t), dimension(component_count), intent(out) iosystem 
    )
    -
    - -

    Initialize the pio subsystem.

    -

    This is a collective call. Input parameters are read on comp_rank=0 values on other tasks are ignored. This variation of PIO_init sets up a distinct set of tasks to handle IO, these tasks do not return from this call. Instead they go to an internal loop and wait to receive further instructions from the computational tasks

    Parameters
    - - - - - - -
    component_countThe number of computational components to associate with this IO component
    peer_commThe communicator from which all other communicator arguments are derived
    comp_commsThe computational communicator for each of the computational components
    io_commThe io communicator
    iosystema derived type which can be used in subsequent pio operations (defined in PIO_types).
    -
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    ◆ init_intracom()

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    subroutine piolib_mod::init_intracom (integer(i4), intent(in) comp_rank,
    integer(i4), intent(in) comp_comm,
    integer(i4), intent(in) num_iotasks,
    integer(i4), intent(in) num_aggregator,
    integer(i4), intent(in) stride,
    integer(i4), intent(in) rearr,
    type (iosystem_desc_t), intent(out) iosystem,
    integer(i4), intent(in), optional base,
    type (pio_rearr_opt_t), intent(in), optional rearr_opts 
    )
    -
    - -

    initialize the pio subsystem.

    -

    This is a collective call. Input parameters are read on comp_rank=0 values on other tasks are ignored. This variation of PIO_init locates the IO tasks on a subset of the compute tasks.

    Parameters
    - - - - - - - - - - -
    comp_rankmpi rank of each participating task,
    comp_commthe mpi communicator which defines the collective.
    num_iotasksthe number of iotasks to define.
    num_aggregatorthe mpi aggregator count
    stridethe stride in the mpi rank between io tasks.
    rearrThe three choices to control rearrangement are:
      -
    • PIO_rearr_none : Do not use any form of rearrangement
      • -
    • PIO_rearr_box : Use a PIO internal box rearrangement
      • -
    • PIO_rearr_subset : Use a PIO internal subsetting rearrangement
      • -
    -
    iosystema derived type which can be used in subsequent pio operations (defined in PIO_types).
    baseoptional argument can be used to offset the first io task - default base is task 1.
    rearr_optsthe rearranger options.
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    subroutine piolib_mod::pio_initdecomp_bc (iosystem, basepiotype, dims, compstart, compcount, iodesc)
     Implements the block-cyclic decomposition for PIO_initdecomp. More...
     
    subroutine piolib_mod::initdecomp_2dof_bin_i4 (iosystem, basepiotype, dims, lenblocks, compdof, iodofr, iodofw, iodesc)
     A deprecated interface to the PIO_initdecomp method. More...
     
    subroutine piolib_mod::initdecomp_1dof_bin_i8 (iosystem, basepiotype, dims, lenblocks, compdof, iodofr, iodesc)
     A deprecated interface to the PIO_initdecomp method. More...
     
    subroutine piolib_mod::initdecomp_2dof_nf_i4 (iosystem, basepiotype, dims, lenblocks, compdof, iodofr, iodofw, start, count, iodesc)
     A deprecated interface to the PIO_initdecomp method. More...
     
    subroutine piolib_mod::initdecomp_1dof_nf_i4 (iosystem, basepiotype, dims, lenblocks, compdof, iodof, start, count, iodesc)
     A deprecated interface to the PIO_initdecomp method. More...
     
    subroutine piolib_mod::pio_initdecomp_dof_i4 (iosystem, basepiotype, dims, compdof, iodesc, rearr, iostart, iocount)
     Implements the degrees of freedom decomposition for PIO_initdecomp (previous name: initdecomp_1dof_nf_box) More...
     
    -

    Detailed Description

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    PIO_initdecomp is an overload interface the models decomposition to pio.

    -

    initdecomp_1dof_bin_i8, initdecomp_1dof_nf_i4, initdecomp_2dof_bin_i4, and initdecomp_2dof_nf_i4 are all depreciated, but supported for backwards compatibility.

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    Function/Subroutine Documentation

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    ◆ initdecomp_1dof_bin_i8()

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    subroutine piolib_mod::initdecomp_1dof_bin_i8 (type (iosystem_desc_t), intent(in) iosystem,
    integer(i4), intent(in) basepiotype,
    integer(i4), dimension(:), intent(in) dims,
    integer(i4), intent(in) lenblocks,
    integer(pio_offset_kind), dimension(:), intent(in) compdof,
    integer(pio_offset_kind), dimension(:), intent(in) iodofr,
    type (io_desc_t), intent(inout) iodesc 
    )
    -
    - -

    A deprecated interface to the PIO_initdecomp method.

    -
    Deprecated:
    -
    Parameters
    - - - - - - - - -
    iosystem: a defined pio system descriptor, see PIO_types
    basepiotype: the type of variable(s) associated with this iodesc. The base types supported by PIO are:
      -
    • PIO_double : 8-byte reals or double precision
      • -
    • PIO_real : 4-byte reals
      • -
    • PIO_int : 4-byte integers
      • -
    • PIO_char : character
      • -
    -
    dims: an array of the global length of each dimesion of the variable(s)
    lenblocks:
    compdof: mapping of the storage order of the variable to its memory order
    iodofr:
    iodescThe io descriptor structure in defined in this subroutine and subsequently used in PIO_read_darray, PIO_write_darray, PIO_put_var, PIO_get_var calls (see pio_types).
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    ◆ initdecomp_1dof_nf_i4()

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    subroutine piolib_mod::initdecomp_1dof_nf_i4 (type (iosystem_desc_t), intent(in) iosystem,
    integer(i4), intent(in) basepiotype,
    integer(i4), dimension(:), intent(in) dims,
    integer (i4), intent(in) lenblocks,
    integer (i4), dimension(:), intent(in) compdof,
    integer (i4), dimension(:), intent(in) iodof,
    integer(pio_offset_kind), dimension(:), intent(in) start,
    integer(pio_offset_kind), dimension(:), intent(in) count,
    type (io_desc_t), intent(inout) iodesc 
    )
    -
    - -

    A deprecated interface to the PIO_initdecomp method.

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    Deprecated:
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    Parameters
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    iosystem: a defined PIO system descriptor, see pio_types
    basepiotype: The type of variable(s) associated with this iodesc. The base types supported by PIO are:
      -
    • PIO_double : 8-byte reals or double precision
      • -
    • PIO_real : 4-byte reals
      • -
    • PIO_int : 4-byte integers
      • -
    • PIO_char : character
      • -
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    dims: an array of the global length of each dimesion of the variable(s)
    lenblocks:
    compdof: mapping of the storage order of the variable to its memory order
    iodof:
    start:
    count:
    iodescThe io descriptor structure in defined in this subroutine and subsequently used in PIO_read_darray, PIO_write_darray, PIO_put_var, PIO_get_var calls (see pio_types).
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    ◆ initdecomp_2dof_bin_i4()

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    subroutine piolib_mod::initdecomp_2dof_bin_i4 (type (iosystem_desc_t), intent(in) iosystem,
    integer(i4), intent(in) basepiotype,
    integer(i4), dimension(:), intent(in) dims,
    integer (i4), intent(in) lenblocks,
    integer (i4), dimension(:), intent(in) compdof,
    integer (i4), dimension(:), intent(in) iodofr,
    integer (i4), dimension(:), intent(in) iodofw,
    type (io_desc_t), intent(inout) iodesc 
    )
    -
    - -

    A deprecated interface to the PIO_initdecomp method.

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    Deprecated:
    -
    Parameters
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    iosystem: a defined pio system descriptor, see PIO_types
    basepiotype: the type of variable(s) associated with this iodesc. The base types supported by PIO are:
      -
    • PIO_double : 8-byte reals or double precision
      • -
    • PIO_real : 4-byte reals
      • -
    • PIO_int : 4-byte integers
      • -
    • PIO_char : character
      • -
    -
    dims: an array of the global length of each dimesion of the variable(s)
    lenblocks:
    compdof: mapping of the storage order of the variable to its memory order
    iodofr:
    iodofw:
    iodescThe io descriptor structure in defined in this subroutine and subsequently used in PIO_read_darray, PIO_write_darray, PIO_put_var, PIO_get_var calls (see pio_types).
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    ◆ initdecomp_2dof_nf_i4()

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    subroutine piolib_mod::initdecomp_2dof_nf_i4 (type (iosystem_desc_t), intent(in) iosystem,
    integer(i4), intent(in) basepiotype,
    integer(i4), dimension(:), intent(in) dims,
    integer (i4), intent(in) lenblocks,
    integer (i4), dimension(:), intent(in) compdof,
    integer (i4), dimension(:), intent(in) iodofr,
    integer (i4), dimension(:), intent(in) iodofw,
    integer(pio_offset_kind), dimension(:), intent(in) start,
    integer(pio_offset_kind), dimension(:), intent(in) count,
    type (io_desc_t), intent(inout) iodesc 
    )
    -
    - -

    A deprecated interface to the PIO_initdecomp method.

    -
    Deprecated:
    -
    Parameters
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    iosystem: a defined pio system descriptor, see PIO_types
    basepiotype: the type of variable(s) associated with this iodesc. The base types supported by PIO are:
      -
    • PIO_double : 8-byte reals or double precision
      • -
    • PIO_real : 4-byte reals
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    • PIO_int : 4-byte integers
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    -
    dims: an array of the global length of each dimesion of the variable(s)
    lenblocks:
    compdof: mapping of the storage order of the variable to its memory order
    iodofr:
    iodofw:
    start: used with count to give a block description of the shape of the data
    count:
    iodescThe io descriptor structure in defined in this subroutine and subsequently used in PIO_read_darray, PIO_write_darray, PIO_put_var, PIO_get_var calls (see pio_types).
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    ◆ pio_initdecomp_bc()

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    subroutine piolib_mod::pio_initdecomp_bc (type (iosystem_desc_t), intent(inout) iosystem,
    integer(i4), intent(in) basepiotype,
    integer(i4), dimension(:), intent(in) dims,
    integer (kind=pio_offset_kind), dimension(:) compstart,
    integer (kind=pio_offset_kind), dimension(:) compcount,
    type (io_desc_t), intent(out) iodesc 
    )
    -
    - -

    Implements the block-cyclic decomposition for PIO_initdecomp.

    -

    This provides the ability to describe a computational decomposition in PIO that has a block-cyclic form. That is something that can be described using start and count arrays. Optional parameters for this subroutine allows for the specification of io decomposition using iostart and iocount arrays. If iostart and iocount arrays are not specified by the user, and rearrangement is turned on then PIO will calculate a suitable IO decomposition

    Parameters
    - - - - - - - -
    iosystemIO system descriptor structure. This structure contains the general IO subsystem data and MPI structure
    basepiotypeThe type of variable(s) associated with this iodesc. The base types supported by PIO are:
      -
    • PIO_double : 8-byte reals or double precision
      • -
    • PIO_real : 4-byte reals
      • -
    • PIO_int : 4-byte integers
      • -
    • PIO_char : character
      • -
    -
    dimsAn array of the global length of each dimesion of the variable(s)
    compstartThe start index into the block-cyclic computational decomposition
    compcountThe count for the block-cyclic computational decomposition
    iodescThe io descriptor structure in defined in this subroutine and subsequently used in PIO_read_darray, PIO_write_darray, PIO_put_var, PIO_get_var calls (see pio_types).
    -
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    ◆ pio_initdecomp_dof_i4()

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    subroutine piolib_mod::pio_initdecomp_dof_i4 (type (iosystem_desc_t), intent(inout) iosystem,
    integer(i4), intent(in) basepiotype,
    integer(i4), dimension(:), intent(in) dims,
    integer(i4), dimension(:), intent(in) compdof,
    type (io_desc_t), intent(inout) iodesc,
    integer, optional, target rearr,
    integer (pio_offset_kind), dimension(:), optional iostart,
    integer (pio_offset_kind), dimension(:), optional iocount 
    )
    -
    - -

    Implements the degrees of freedom decomposition for PIO_initdecomp (previous name: initdecomp_1dof_nf_box)

    -

    This provides the ability to describe a computational decomposition in PIO using degrees of freedom method. This is a decomposition that can not be easily described using a start and count method. Optional parameters for this subroutine allows for the specififcation of io decomposition using iostart and iocount arrays. If iostart and iocount arrays are not specified by the user, and rearrangement is turned on then PIO will calculate an suitable IO decomposition. Note that this subroutine was previously called initdecomp_1dof_nf_box

    Parameters
    - - - - - - - - - -
    iosystemIO system descriptor structure. This structure contains the general IO subsystem data and MPI structure
    basepiotypeThe type of variable(s) associated with this iodesc. The base types supported by PIO are:
      -
    • PIO_double : 8-byte reals or double precision
      • -
    • PIO_real : 4-byte reals
      • -
    • PIO_int : 4-byte integers
      • -
    • PIO_char : character
      • -
    -
    dimsAn array of the global length of each dimesion of the variable(s)
    compdofMapping of the storage order for the computational decomposition to its memory order
    iodescThe io descriptor structure in defined in this subroutine and subsequently used in PIO_read_darray, PIO_write_darray, PIO_put_var, PIO_get_var calls (see pio_types).
    rearrrearranger
    iostartThe start index for the block-cyclic io decomposition
    iocountThe count for the block-cyclic io decomposition
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    integer function pio_nf::inq_att_desc (File, vardesc, name, xtype, len)
     Gets information about attributes. More...
     
    -integer function pio_nf::inq_att_vid (File, varid, name, xtype, len)
     Gets information about attributes.
     
    -integer function pio_nf::inq_att_id (ncid, varid, name, xtype, len)
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    integer function pio_nf::inq_att_desc (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    character(len=*), intent(in) name,
    integer, intent(out), optional xtype,
    integer(pio_offset_kind), intent(out), optional len 
    )
    -
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    Gets information about attributes.

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    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    name: Name of the attribute
    xtype: The type of attribute
    len: The length of the attribute
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    integer function pio_nf::inq_attlen_desc (File, vardesc, name, len)
     Gets the attribute length. More...
     
    -integer function pio_nf::inq_attlen_vid (File, varid, name, len)
     Gets the attribute length.
     
    -integer function pio_nf::inq_attlen_id (ncid, varid, name, len)
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    integer function pio_nf::inq_attlen_desc (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(in) vardesc,
    character(len=*), intent(in) name,
    integer(kind=pio_offset_kind), intent(out) len 
    )
    -
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    Gets the attribute length.

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    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    name: name of attribute
    len: Length of attribute
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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     Gets the name of an attribute.
     
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     Gets the name of an attribute.
     
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    integer function pio_nf::inq_dimid_desc (File, name, dimid)
     Returns the netcdf dimension id for the name. More...
     
    integer function pio_nf::inq_dimid_id (ncid, name, dimid)
     Returns the netcdf dimension id for the name. More...
     
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    )
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    Returns the netcdf dimension id for the name.

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    name: The name of the netcdf dimension.
    dimid: The netcdf dimension id.
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    integer, intent(out) dimid 
    )
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    integer function pio_nf::inq_dimlen_desc (File, dimid, len)
     Get information about the length of a particular dimension in netcdf file. More...
     
    -integer function pio_nf::inq_dimlen_desc_long (File, dimid, len)
     Get information about the length of a particular dimension in netcdf file.
     
    -integer function pio_nf::inq_dimlen_id (ncid, dimid, len)
     Get information about the length of a particular dimension in netcdf file.
     
    -integer function pio_nf::inq_dimlen_id_long (ncid, dimid, len)
     Get information about the length of a particular dimension in netcdf file.
     
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    integer, intent(out) len 
    )
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    Get information about the length of a particular dimension in netcdf file.

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    dimid: The netcdf dimension ID.
    len: The length of the dimesion.
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    integer function pio_nf::inq_dimname_desc (File, dimid, name)
     Get information about the name of of a dimension. More...
     
    integer function pio_nf::inq_dimname_id (ncid, dimid, name)
     Get information about the name of of a dimension. More...
     
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    character(len=*), intent(out) name 
    )
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    Get information about the name of of a dimension.

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    FileFile descriptor structure. This structure holds information associated with each open file
    dimid: The netcdf dimension ID.
    name: The name of the dimesion.
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    )
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    Get information about the name of of a dimension.

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    integer function pio_nf::inq_natts_desc (File, natts)
     Get information about the number of global attributes in a file or group. More...
     
    integer function pio_nf::inq_natts_id (ncid, natts)
     Get information about the number of global attributes in a file or group. More...
     
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    )
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    Get information about the number of global attributes in a file or group.

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    integer function pio_nf::inq_ndims_desc (File, ndims)
     Get information about the number of dimensions of a file or group. More...
     
    integer function pio_nf::inq_ndims_id (ncid, ndims)
     Get information about the number of dimensions of a file or group. More...
     
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    )
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    Get information about the number of dimensions of a file or group.

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    ndims: The number of dimensions in the file.
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    )
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    Get information about the number of dimensions of a file or group.

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    integer function pio_nf::inq_nvars_desc (File, nvars)
     Get information about the number of variables in a file or group. More...
     
    integer function pio_nf::inq_nvars_id (ncid, nvars)
     Get information about the number of variables in a file or group. More...
     
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    )
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    Get information about the number of variables in a file or group.

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    nvars: The number of variables in the file.
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    )
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    integer function pio_nf::inq_var_deflate_desc (File, vardesc, shuffle, deflate, deflate_level)
     Gets metadata information for netcdf file. More...
     
    integer function pio_nf::inq_var_deflate_vid (File, varid, shuffle, deflate, deflate_level)
     Gets metadata information for netcdf file. More...
     
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     Gets metadata information for netcdf file. More...
     
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    type (var_desc_t), intent(in) vardesc,
    integer, intent(out) shuffle,
    integer, intent(out) deflate,
    integer, intent(out) deflate_level 
    )
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    Gets metadata information for netcdf file.

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    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    shuffle: Value of shuffle
    deflate: Status of deflate
    deflate_level: Level of deflate
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    integer, intent(in) varid,
    integer, intent(out) shuffle,
    integer, intent(out) deflate,
    integer, intent(out) deflate_level 
    )
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    integer, intent(in) varid,
    integer, intent(out) shuffle,
    integer, intent(out) deflate,
    integer, intent(out) deflate_level 
    )
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    Gets metadata information for netcdf file.

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    integer function pio_nf::inq_vardimid_desc (File, vardesc, dimids)
     returns the dimids of the variable as an interger array More...
     
    -integer function pio_nf::inq_vardimid_vid (File, varid, dimids)
     returns the dimids of the variable as an interger array
     
    -integer function pio_nf::inq_vardimid_id (ncid, varid, dimids)
     returns the dimids of the variable as an interger array
     
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    integer, dimension(:), intent(out) dimids 
    )
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    returns the dimids of the variable as an interger array

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    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    dimids: The dimension identifier returned by PIO_def_dim
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    integer function pio_nf::inq_varid_desc (File, name, vardesc)
     Returns the ID of a netcdf variable given its name. More...
     
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     Returns the ID of a netcdf variable given its name.
     
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     Returns the ID of a netcdf variable given its name.
     
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    integer function pio_nf::inq_varid_desc (type (file_desc_t), intent(in) File,
    character(len=*), intent(in) name,
    type (var_desc_t), intent(inout) vardesc 
    )
    -
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    Returns the ID of a netcdf variable given its name.

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    FileFile descriptor structure. This structure holds information associated with each open file
    name: Name of the returned attribute
    vardescVariable description structure.
    -
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    integer function pio_nf::inq_varname_desc (File, vardesc, name)
     Get the name associated with a variable. More...
     
    -integer function pio_nf::inq_varname_vid (File, varid, name)
     Get the name associated with a variable.
     
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     Get the name associated with a variable.
     
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    integer function pio_nf::inq_varnatts_desc (File, vardesc, natts)
     Gets metadata information for netcdf file. More...
     
    integer function pio_nf::inq_varnatts_vid (File, varid, natts)
     Gets metadata information for netcdf file. More...
     
    integer function pio_nf::inq_varnatts_id (ncid, varid, natts)
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    vardescVariable description structure.
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    integer function pio_nf::inq_varndims_desc (File, vardesc, ndims)
     Gets the number of dimension associated with a netcdf variable. More...
     
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     Gets the number of dimension associated with a netcdf variable.
     
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     Gets the number of dimension associated with a netcdf variable.
     
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    integer function pio_nf::inq_vartype_desc (File, vardesc, type)
     Gets metadata information for netcdf file. More...
     
    integer function pio_nf::inq_vartype_vid (File, varid, type)
     Gets metadata information for netcdf file. More...
     
    integer function pio_nf::inq_vartype_id (ncid, varid, type)
     Gets metadata information for netcdf file. More...
     
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    integer, intent(out) type 
    )
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    Gets metadata information for netcdf file.

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    vardescVariable description structure.
    type: The type of variable
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    integer, intent(out) type 
    )
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    integer, intent(out) type 
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    integer function pio_nf::inquire_desc (File, nDimensions, nVariables, nAttributes, unlimitedDimID)
     Gets metadata information for netcdf file. More...
     
    integer function pio_nf::inquire_id (ncid, nDimensions, nVariables, nAttributes, unlimitedDimID)
     Gets metadata information for netcdf file. More...
     
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    integer, intent(out), optional nVariables,
    integer, intent(out), optional nAttributes,
    integer, intent(out), optional unlimitedDimID 
    )
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    FileFile descriptor structure. This structure holds information associated with each open file
    nDimensions: Number of dimensions defined for the netcdf file
    nVariables: Number of variables defined for the netcdf file
    nAttributes: Number of attributes defined for the netcdf file
    unlimitedDimID: the Unlimited dimension ID
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    integer, intent(out), optional nDimensions,
    integer, intent(out), optional nVariables,
    integer, intent(out), optional nAttributes,
    integer, intent(out), optional unlimitedDimID 
    )
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    integer function pio_nf::inquire_dimension_desc (file, dimid, name, len)
     Get information about a particular dimension in netcdf file. More...
     
    -integer function pio_nf::inquire_dimension_id (ncid, dimid, name, len)
     Get information about a particular dimension in netcdf file.
     
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    character (len = *), intent(out), optional name,
    integer, intent(out), optional len 
    )
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    name: The name of the dimension.
    len: The length of the dimesions name.
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    integer function pio_nf::inquire_variable_desc (file, vardesc, name, xtype, ndims, dimids, natts)
     Inquires if a NetCDF variable is present and returns its attributes. More...
     
    -integer function pio_nf::inquire_variable_vid (file, varid, name, xtype, ndims, dimids, natts)
     Inquires if a NetCDF variable is present and returns its attributes.
     
    -integer function pio_nf::inquire_variable_id (ncid, varid, name, xtype, ndims, dimids, natts)
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    type(var_desc_t), intent(in) vardesc,
    character (len = *), intent(out), optional name,
    integer, intent(out), optional xtype,
    integer, intent(out), optional ndims,
    integer, dimension(:), intent(out), optional dimids,
    integer, intent(out), optional natts 
    )
    -
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    Inquires if a NetCDF variable is present and returns its attributes.

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    file: A netcdf file descriptor returned by PIO_openfile or PIO_createfile.
    vardescVariable description structure.
    name: The name of the variable
    xtype: The type of the variable
    ndims: The number of dimensions for the variable.
    dimids: The dimension identifier returned by PIO_def_dim
    natts: Number of attributes associated with the variable
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    int inq_file_metadata (file_desc_t *file, int ncid, int iotype, int *nvars, int **rec_var, int **pio_type, int **pio_type_size, MPI_Datatype **mpi_type, int **mpi_type_size)
     Internal function used when opening an existing file. More...
     
    int PIOc_openfile_retry (int iosysid, int *ncidp, int *iotype, const char *filename, int mode, int retry)
     Open an existing file using PIO library. More...
     
    integer function, public piolib_mod::pio_openfile (iosystem, file, iotype, fname, mode)
     open an existing file using pio More...
     
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    int inq_file_metadata (file_desc_t * file,
    int ncid,
    int iotype,
    int * nvars,
    int ** rec_var,
    int ** pio_type,
    int ** pio_type_size,
    MPI_Datatype ** mpi_type,
    int ** mpi_type_size 
    )
    -
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    Internal function used when opening an existing file.

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    This function is called by PIOc_openfile_retry(). It learns some things about the metadata in that file. The results end up in the file_desc_t.

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    filepointer to the file_desc_t for this file.
    ncidthe ncid assigned to the file when opened.
    iotypethe iotype used to open the file.
    nvarsa pointer that gets the number of vars in the file.
    rec_vargets an array (length nvars) of rec_var values for each var in the file. This array must be freed by caller.
    pio_typegets an array (length nvars) of pio_type values for each var in the file. This array must be freed by caller.
    pio_type_sizegets an array (length nvars) of the size of the PIO type for each var in the file. This array must be freed by caller.
    mpi_typegets an array (length nvars) of MPI type values for each var in the file. This array must be freed by caller.
    mpi_type_sizegets an array (length nvars) of the size of the MPI type for each var in the file. This array must be freed by caller.
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    Author
    Ed Hartnett
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    integer function, public piolib_mod::pio_openfile (type (iosystem_desc_t), intent(inout), target iosystem,
    type (file_desc_t), intent(out) file,
    integer, intent(in) iotype,
    character(len=*), intent(in) fname,
    integer, intent(in), optional mode 
    )
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    open an existing file using pio

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    Input parameters are read on comp task 0 and ignored elsewhere.

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    iosystem: a defined pio system descriptor created by a call to PIO_init (see PIO_types)
    file: the returned file descriptor
    iotype: An integer parameter which controls the iotype.
    fname: the name of the file to open
    mode: a zero value (or PIO_nowrite) specifies the default behavior: open the dataset with read-only access, buffering and caching accesses for efficiency otherwise, the creation mode is PIO_write. setting the PIO_write flag opens the dataset with read-write access. ("writing" means any kind of change to the dataset, including appending or changing data, adding or renaming dimensions, variables, and attributes, or deleting attributes.)
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ PIOc_openfile_retry()

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    int PIOc_openfile_retry (int iosysid,
    int * ncidp,
    int * iotype,
    const char * filename,
    int mode,
    int retry 
    )
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    Open an existing file using PIO library.

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    This is an internal function. Depending on the value of the retry parameter, a failed open operation will be handled differently. If retry is non-zero, then a failed attempt to open a file with netCDF-4 (serial or parallel), or parallel-netcdf will be followed by an attempt to open the file as a serial classic netCDF file. This is an important feature to some NCAR users. The functionality is exposed to the user as PIOc_openfile() (which does the retry), and PIOc_open() (which does not do the retry).

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    Input parameters are read on comp task 0 and ignored elsewhere.

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    iosysida defined pio system descriptor.
    ncidpa pio file descriptor.
    iotypea pio output format.
    filenamethe filename to open
    modethe netcdf mode for the open operation
    retrynon-zero to automatically retry with netCDF serial classic.
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    0 for success, error code otherwise.
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    Author
    Jim Edwards, Ed Hartnett
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    Return code from MPI function codes.

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    Writes an netcdf attribute to a file. -More...

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    -Functions/Subroutines

    integer function pionfatt_mod::put_att_desc_text (File, vdesc, name, values)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfatt_mod::put_att_1d_id_real (ncid, varid, name, values)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfatt_mod::put_att_1d_id_double (ncid, varid, name, values)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfatt_mod::put_att_1d_id_int (ncid, varid, name, values)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfatt_mod::put_att_1d_desc_real (File, varDesc, name, values)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfatt_mod::put_att_1d_desc_int (File, varDesc, name, values)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfatt_mod::put_att_1d_desc_double (File, varDesc, name, values)
     Writes an netcdf attribute to a file. More...
     
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    Detailed Description

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    Writes an netcdf attribute to a file.

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    Function/Subroutine Documentation

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    ◆ put_att_1d_desc_double()

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    integer function pionfatt_mod::put_att_1d_desc_double (type (file_desc_t), intent(inout), target File,
    type (var_desc_t), intent(in) varDesc,
    character(len=*), intent(in) name,
    real(r8), dimension(:), intent(in) values 
    )
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    Writes an netcdf attribute to a file.

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    FileFile descriptor structure. This structure holds information associated with each open file
    varDescVariable description structure.
    name: name of the attribute to add
    values: The value for the netcdf attribute
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_att_1d_desc_int()

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    integer function pionfatt_mod::put_att_1d_desc_int (type (file_desc_t), intent(inout), target File,
    type (var_desc_t), intent(in) varDesc,
    character(len=*), intent(in) name,
    integer(i4), dimension(:), intent(in) values 
    )
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    Writes an netcdf attribute to a file.

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    FileFile descriptor structure. This structure holds information associated with each open file
    varDescVariable description structure.
    name: name of the attribute to add
    values: The value for the netcdf attribute
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_att_1d_desc_real()

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    integer function pionfatt_mod::put_att_1d_desc_real (type (file_desc_t), intent(inout), target File,
    type (var_desc_t), intent(in) varDesc,
    character(len=*), intent(in) name,
    real(r4), dimension(:), intent(in) values 
    )
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    Writes an netcdf attribute to a file.

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    FileFile descriptor structure. This structure holds information associated with each open file
    varDescVariable description structure.
    name: name of the attribute to add
    values: The value for the netcdf attribute
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_att_1d_id_double()

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    integer function pionfatt_mod::put_att_1d_id_double (integer, intent(in) ncid,
    integer, intent(in) varid,
    character(len=*), intent(in) name,
    real(r8), dimension(:), intent(in) values 
    )
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    Writes an netcdf attribute to a file.

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    ncidFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to add
    values: The value for the netcdf attribute
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_att_1d_id_int()

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    integer function pionfatt_mod::put_att_1d_id_int (integer, intent(in) ncid,
    integer, intent(in) varid,
    character(len=*), intent(in) name,
    integer(i4), dimension(:), intent(in) values 
    )
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    Writes an netcdf attribute to a file.

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    ncidFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to add
    values: The value for the netcdf attribute
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_att_1d_id_real()

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    integer function pionfatt_mod::put_att_1d_id_real (integer, intent(in) ncid,
    integer, intent(in) varid,
    character(len=*), intent(in) name,
    real(r4), dimension(:), intent(in) values 
    )
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    Writes an netcdf attribute to a file.

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    ncidFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    name: name of the attribute to add
    values: The value for the netcdf attribute
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_att_desc_text()

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    integer function pionfatt_mod::put_att_desc_text (type (file_desc_t), intent(in) File,
    type(var_desc_t), intent(in) vdesc,
    character(len=*), intent(in) name,
    character(len=*), intent(in) values 
    )
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    Writes an netcdf attribute to a file.

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    FileFile descriptor structure. This structure holds information associated with each open file
    vdesc: The netcdf variable descriptor
    name: name of the attribute to add
    values: The value for the netcdf attribute
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    -Functions/Subroutines

    integer function pionfput_mod::put_var1_text (File, varid, index, ival)
     Write one element of data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var1_int (File, varid, index, ival)
     Write one element of data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var1_real (File, varid, index, ival)
     Write one element of data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var1_double (File, varid, index, ival)
     Write one element of data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var1_vdesc_text (File, vardesc, index, ival)
     Write one element of data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var_0d_text (File, varid, ival)
     Writes a netCDF scalar variable. More...
     
    integer function pionfput_mod::put_var_1d_text (File, varid, ival)
     Writes text data to netcdf variable. More...
     
    integer function pionfput_mod::put_var_2d_text (File, varid, ival)
     Writes text data to netcdf variable. More...
     
    integer function pionfput_mod::put_var_3d_text (File, varid, ival)
     Writes text data to netcdf variable. More...
     
    integer function pionfput_mod::put_var_4d_text (File, varid, ival)
     Writes text data to netcdf variable. More...
     
    integer function pionfput_mod::put_var_5d_text (File, varid, ival)
     Writes text data to netcdf variable. More...
     
    integer function pionfput_mod::put_var_internal_int (ncid, varid, ival)
     Writes int data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var_internal_real (ncid, varid, ival)
     Writes real data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var_internal_double (ncid, varid, ival)
     Writes double data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var_1d_int (File, varid, ival)
     Write int data to a netCDF varaible of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_2d_int (File, varid, ival)
     Write int data to a netCDF varaible of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_3d_int (File, varid, ival)
     Write int data to a netCDF varaible of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_4d_int (File, varid, ival)
     Write int data to a netCDF varaible of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_5d_int (File, varid, ival)
     Write int data to a netCDF varaible of 5 dimension(s). More...
     
    integer function pionfput_mod::put_var_1d_real (File, varid, ival)
     Write real data to a netCDF varaible of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_2d_real (File, varid, ival)
     Write real data to a netCDF varaible of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_3d_real (File, varid, ival)
     Write real data to a netCDF varaible of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_4d_real (File, varid, ival)
     Write real data to a netCDF varaible of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_5d_real (File, varid, ival)
     Write real data to a netCDF varaible of 5 dimension(s). More...
     
    integer function pionfput_mod::put_var_1d_double (File, varid, ival)
     Write double data to a netCDF varaible of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_2d_double (File, varid, ival)
     Write double data to a netCDF varaible of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_3d_double (File, varid, ival)
     Write double data to a netCDF varaible of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_4d_double (File, varid, ival)
     Write double data to a netCDF varaible of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_5d_double (File, varid, ival)
     Write double data to a netCDF varaible of 5 dimension(s). More...
     
    integer function pionfput_mod::put_var_0d_int (File, varid, ival)
     Writes int data to a netCDF scalar variable. More...
     
    integer function pionfput_mod::put_var_0d_real (File, varid, ival)
     Writes real data to a netCDF scalar variable. More...
     
    integer function pionfput_mod::put_var_0d_double (File, varid, ival)
     Writes double data to a netCDF scalar variable. More...
     
    integer function pionfput_mod::put_var_vdesc_0d_text (File, vardesc, ival)
     Write text data to a netcdf variable of 0 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_1d_text (File, vardesc, ival)
     Write text data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_2d_text (File, vardesc, ival)
     Write text data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_3d_text (File, vardesc, ival)
     Write text data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_4d_text (File, vardesc, ival)
     Write text data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_5d_text (File, vardesc, ival)
     Write text data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_0d_real (File, vardesc, ival)
     Write real data to a netcdf variable of 0 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_1d_real (File, vardesc, ival)
     Write real data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_2d_real (File, vardesc, ival)
     Write real data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_3d_real (File, vardesc, ival)
     Write real data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_4d_real (File, vardesc, ival)
     Write real data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_5d_real (File, vardesc, ival)
     Write real data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_0d_double (File, vardesc, ival)
     Write double data to a netcdf variable of 0 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_1d_double (File, vardesc, ival)
     Write double data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_2d_double (File, vardesc, ival)
     Write double data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_3d_double (File, vardesc, ival)
     Write double data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_4d_double (File, vardesc, ival)
     Write double data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_5d_double (File, vardesc, ival)
     Write double data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_0d_int (File, vardesc, ival)
     Write int data to a netcdf variable of 0 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_1d_int (File, vardesc, ival)
     Write int data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_2d_int (File, vardesc, ival)
     Write int data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_3d_int (File, vardesc, ival)
     Write int data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_4d_int (File, vardesc, ival)
     Write int data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_5d_int (File, vardesc, ival)
     Write int data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_1d_text (File, varid, start, count, ival)
     Write text data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_2d_text (File, varid, start, count, ival)
     Write text data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_3d_text (File, varid, start, count, ival)
     Write text data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_4d_text (File, varid, start, count, ival)
     Write text data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_5d_text (File, varid, start, count, ival)
     Write text data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_1d_int (File, varid, start, count, ival)
     Write int data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_2d_int (File, varid, start, count, ival)
     Write int data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_3d_int (File, varid, start, count, ival)
     Write int data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_4d_int (File, varid, start, count, ival)
     Write int data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_5d_int (File, varid, start, count, ival)
     Write int data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_1d_real (File, varid, start, count, ival)
     Write real data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_2d_real (File, varid, start, count, ival)
     Write real data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_3d_real (File, varid, start, count, ival)
     Write real data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_4d_real (File, varid, start, count, ival)
     Write real data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_5d_real (File, varid, start, count, ival)
     Write real data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_1d_double (File, varid, start, count, ival)
     Write double data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_2d_double (File, varid, start, count, ival)
     Write double data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_3d_double (File, varid, start, count, ival)
     Write double data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_4d_double (File, varid, start, count, ival)
     Write double data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_5d_double (File, varid, start, count, ival)
     Write double data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_1d_text (File, vardesc, start, count, ival)
     Write text data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_2d_text (File, vardesc, start, count, ival)
     Write text data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_3d_text (File, vardesc, start, count, ival)
     Write text data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_4d_text (File, vardesc, start, count, ival)
     Write text data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_5d_text (File, vardesc, start, count, ival)
     Write text data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_1d_real (File, vardesc, start, count, ival)
     Write real data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_2d_real (File, vardesc, start, count, ival)
     Write real data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_3d_real (File, vardesc, start, count, ival)
     Write real data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_4d_real (File, vardesc, start, count, ival)
     Write real data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_5d_real (File, vardesc, start, count, ival)
     Write real data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_1d_double (File, vardesc, start, count, ival)
     Write double data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_2d_double (File, vardesc, start, count, ival)
     Write double data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_3d_double (File, vardesc, start, count, ival)
     Write double data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_4d_double (File, vardesc, start, count, ival)
     Write double data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_5d_double (File, vardesc, start, count, ival)
     Write double data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_1d_int (File, vardesc, start, count, ival)
     Write int data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_2d_int (File, vardesc, start, count, ival)
     Write int data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_3d_int (File, vardesc, start, count, ival)
     Write int data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_4d_int (File, vardesc, start, count, ival)
     Write int data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_5d_int (File, vardesc, start, count, ival)
     Write int data to a netcdf variable of 5 dimension(s). More...
     
    -

    Detailed Description

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    Writes data to a netCDF file.

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    The put_var interface is provided as a simplified interface to write variables to a netcdf format file.

    Warning
    Although this is a collective call the variable is written from the root IO task, no consistancy check is made with data passed on other tasks.
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    Function/Subroutine Documentation

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    ◆ put_var1_double()

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    integer function pionfput_mod::put_var1_double (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) index,
    real(r8), intent(in) ival 
    )
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    Write one element of data to a netCDF variable.

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    Parameters
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    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    index:
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var1_int()

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    integer function pionfput_mod::put_var1_int (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) index,
    integer(i4), intent(in) ival 
    )
    -
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    Write one element of data to a netCDF variable.

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    Parameters
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    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    index:
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var1_real()

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    integer function pionfput_mod::put_var1_real (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) index,
    real(r4), intent(in) ival 
    )
    -
    - -

    Write one element of data to a netCDF variable.

    -
    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    index:
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var1_text()

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    integer function pionfput_mod::put_var1_text (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) index,
    character(len=*), intent(in) ival 
    )
    -
    - -

    Write one element of data to a netCDF variable.

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    Parameters
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    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    index:
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var1_vdesc_text()

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    integer function pionfput_mod::put_var1_vdesc_text (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) index,
    character(len=*), intent(in) ival 
    )
    -
    - -

    Write one element of data to a netCDF variable.

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    Parameters
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    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    index:
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_0d_double()

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    integer function pionfput_mod::put_var_0d_double (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    real(r8), intent(in) ival 
    )
    -
    - -

    Writes double data to a netCDF scalar variable.

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    Parameters
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    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_0d_int()

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    integer function pionfput_mod::put_var_0d_int (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer(i4), intent(in) ival 
    )
    -
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    Writes int data to a netCDF scalar variable.

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    Parameters
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    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_0d_real()

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    integer function pionfput_mod::put_var_0d_real (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    real(r4), intent(in) ival 
    )
    -
    - -

    Writes real data to a netCDF scalar variable.

    -
    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_0d_text()

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    integer function pionfput_mod::put_var_0d_text (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    character(len=*), intent(in) ival 
    )
    -
    - -

    Writes a netCDF scalar variable.

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    Parameters
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    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf variable
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_1d_double()

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    integer function pionfput_mod::put_var_1d_double (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    real(r8), dimension(:), intent(in) ival 
    )
    -
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    Write double data to a netCDF varaible of 1 dimension(s).

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    Parameters
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    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_1d_int()

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    integer function pionfput_mod::put_var_1d_int (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer(i4), dimension(:), intent(in) ival 
    )
    -
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    Write int data to a netCDF varaible of 1 dimension(s).

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    Parameters
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    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_1d_real()

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    integer function pionfput_mod::put_var_1d_real (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    real(r4), dimension(:), intent(in) ival 
    )
    -
    - -

    Write real data to a netCDF varaible of 1 dimension(s).

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    Parameters
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    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_1d_text()

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    integer function pionfput_mod::put_var_1d_text (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    character(len=*), dimension(:), intent(in) ival 
    )
    -
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    Writes text data to netcdf variable.

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    Parameters
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    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_2d_double()

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    integer function pionfput_mod::put_var_2d_double (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    real(r8), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netCDF varaible of 2 dimension(s).

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    Parameters
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    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_2d_int()

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    integer function pionfput_mod::put_var_2d_int (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer(i4), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netCDF varaible of 2 dimension(s).

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    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_2d_real()

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    integer function pionfput_mod::put_var_2d_real (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    real(r4), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netCDF varaible of 2 dimension(s).

    -
    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_2d_text()

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    integer function pionfput_mod::put_var_2d_text (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    character(len=*), dimension(:,:), intent(in) ival 
    )
    -
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    Writes text data to netcdf variable.

    -
    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_3d_double()

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    integer function pionfput_mod::put_var_3d_double (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    real(r8), dimension(:,:,:), intent(in) ival 
    )
    -
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    Write double data to a netCDF varaible of 3 dimension(s).

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    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
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    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_3d_int()

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    integer function pionfput_mod::put_var_3d_int (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer(i4), dimension(:,:,:), intent(in) ival 
    )
    -
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    Write int data to a netCDF varaible of 3 dimension(s).

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    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_3d_real()

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    integer function pionfput_mod::put_var_3d_real (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    real(r4), dimension(:,:,:), intent(in) ival 
    )
    -
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    Write real data to a netCDF varaible of 3 dimension(s).

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    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
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    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
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    ◆ put_var_3d_text()

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    integer function pionfput_mod::put_var_3d_text (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    character(len=*), dimension(:,:,:), intent(in) ival 
    )
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    Writes text data to netcdf variable.

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    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_4d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_4d_double (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    real(r8), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netCDF varaible of 4 dimension(s).

    -
    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_4d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_4d_int (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer(i4), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netCDF varaible of 4 dimension(s).

    -
    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_4d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_4d_real (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    real(r4), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netCDF varaible of 4 dimension(s).

    -
    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_4d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_4d_text (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    character(len=*), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Writes text data to netcdf variable.

    -
    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_5d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_5d_double (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    real(r8), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netCDF varaible of 5 dimension(s).

    -
    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_5d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_5d_int (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer(i4), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netCDF varaible of 5 dimension(s).

    -
    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_5d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_5d_real (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    real(r4), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netCDF varaible of 5 dimension(s).

    -
    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_5d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_5d_text (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    character(len=*), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Writes text data to netcdf variable.

    -
    Parameters
    - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    File: A file handle returne from PIO_openfile or PIO_createfile.
    varid: The netcdf variable identifier
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_internal_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_internal_double (integer, intent(in) ncid,
    integer, intent(in) varid,
    real(r8), dimension(*), intent(in) ival 
    )
    -
    - -

    Writes double data to a netCDF variable.

    -
    Parameters
    - - - - -
    ncid: The netcdf file id.
    varid: The netcdf variable identifier
    ival: The data to write.
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_internal_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_internal_int (integer, intent(in) ncid,
    integer, intent(in) varid,
    integer(i4), dimension(*), intent(in) ival 
    )
    -
    - -

    Writes int data to a netCDF variable.

    -
    Parameters
    - - - - -
    ncid: The netcdf file id.
    varid: The netcdf variable identifier
    ival: The data to write.
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_internal_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_internal_real (integer, intent(in) ncid,
    integer, intent(in) varid,
    real(r4), dimension(*), intent(in) ival 
    )
    -
    - -

    Writes real data to a netCDF variable.

    -
    Parameters
    - - - - -
    ncid: The netcdf file id.
    varid: The netcdf variable identifier
    ival: The data to write.
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_0d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_0d_double (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    real(r8), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 0 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_0d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_0d_int (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer(i4), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 0 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_0d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_0d_real (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    real(r4), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 0 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_0d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_0d_text (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    character(len=*), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 0 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_1d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_1d_double (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    real(r8), dimension(:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 1 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_1d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_1d_int (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer(i4), dimension(:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 1 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_1d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_1d_real (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    real(r4), dimension(:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 1 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_1d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_1d_text (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    character(len=*), dimension(:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 1 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_2d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_2d_double (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    real(r8), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 2 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_2d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_2d_int (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer(i4), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 2 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_2d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_2d_real (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    real(r4), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 2 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_2d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_2d_text (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    character(len=*), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 2 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_3d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_3d_double (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    real(r8), dimension(:,:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 3 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_3d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_3d_int (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer(i4), dimension(:,:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 3 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_3d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_3d_real (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    real(r4), dimension(:,:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 3 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_3d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_3d_text (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    character(len=*), dimension(:,:,:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 3 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_4d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_4d_double (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    real(r8), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 4 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_4d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_4d_int (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer(i4), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 4 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_4d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_4d_real (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    real(r4), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 4 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_4d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_4d_text (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    character(len=*), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 4 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_5d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_5d_double (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    real(r8), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 5 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_5d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_5d_int (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer(i4), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 5 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_5d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_5d_real (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    real(r4), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 5 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_var_vdesc_5d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_var_vdesc_5d_text (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    character(len=*), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 5 dimension(s).

    -
    Parameters
    - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_1d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_1d_double (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 1 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_1d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_1d_int (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 1 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_1d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_1d_real (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 1 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_1d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_1d_text (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 1 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_2d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_2d_double (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 2 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_2d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_2d_int (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 2 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_2d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_2d_real (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 2 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_2d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_2d_text (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 2 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_3d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_3d_double (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 3 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_3d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_3d_int (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 3 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_3d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_3d_real (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 3 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_3d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_3d_text (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:,:,:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 3 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_4d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_4d_double (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 4 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_4d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_4d_int (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 4 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_4d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_4d_real (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 4 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_4d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_4d_text (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 4 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_5d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_5d_double (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 5 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_5d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_5d_int (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 5 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_5d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_5d_real (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 5 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_5d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_5d_text (type (file_desc_t), intent(inout) File,
    integer, intent(in) varid,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 5 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    varid: The netcdf variable identifier
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_1d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_1d_double (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 1 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_1d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_1d_int (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 1 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_1d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_1d_real (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 1 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_1d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_1d_text (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 1 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_2d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_2d_double (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 2 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_2d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_2d_int (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 2 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_2d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_2d_real (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 2 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_2d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_2d_text (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:,:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 2 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_3d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_3d_double (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 3 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_3d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_3d_int (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 3 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_3d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_3d_real (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 3 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_3d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_3d_text (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:,:,:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 3 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_4d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_4d_double (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 4 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_4d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_4d_int (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 4 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_4d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_4d_real (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 4 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_4d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_4d_text (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 4 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_5d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_5d_double (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r8), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write double data to a netcdf variable of 5 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_5d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_5d_int (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    integer(i4), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write int data to a netcdf variable of 5 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_5d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_5d_real (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    real(r4), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write real data to a netcdf variable of 5 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    - -

    ◆ put_vara_vdesc_5d_text()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    integer function pionfput_mod::put_vara_vdesc_5d_text (type (file_desc_t), intent(inout) File,
    type(var_desc_t), intent(in) vardesc,
    integer, dimension(:), intent(in) start,
    integer, dimension(:), intent(in) count,
    character(len=*), dimension(:,:,:,:,:), intent(in) ival 
    )
    -
    - -

    Write text data to a netcdf variable of 5 dimension(s).

    -
    Parameters
    - - - - - - -
    FileFile descriptor structure. This structure holds information associated with each open file
    vardescVariable description structure.
    start:
    count:
    ival: The value for the netcdf metadata
    -
    -
    -
    Return values
    - - -
    ierr: The error return code; ierr != PIO_noerr indicates an error. (see PIO_seterrorhandling )
    -
    -
    - -
    -
    -
    - -
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    PIO -  2.4.2 -
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    -Functions/Subroutines
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    PIO_read_darray
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    The overloaded PIO_read_darray function reads a distributed array from disk. -More...

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    -Functions/Subroutines

    subroutine piodarray::read_darray_1d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 1 dimension(s). More...
     
    subroutine piodarray::read_darray_2d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 2 dimension(s). More...
     
    subroutine piodarray::read_darray_3d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 3 dimension(s). More...
     
    subroutine piodarray::read_darray_4d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 4 dimension(s). More...
     
    subroutine piodarray::read_darray_5d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 5 dimension(s). More...
     
    subroutine piodarray::read_darray_6d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 6 dimension(s). More...
     
    subroutine piodarray::read_darray_7d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 7 dimension(s). More...
     
    subroutine piodarray::read_darray_1d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 1 dimension(s). More...
     
    subroutine piodarray::read_darray_2d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 2 dimension(s). More...
     
    subroutine piodarray::read_darray_3d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 3 dimension(s). More...
     
    subroutine piodarray::read_darray_4d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 4 dimension(s). More...
     
    subroutine piodarray::read_darray_5d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 5 dimension(s). More...
     
    subroutine piodarray::read_darray_6d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 6 dimension(s). More...
     
    subroutine piodarray::read_darray_7d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 7 dimension(s). More...
     
    subroutine piodarray::read_darray_1d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 1 dimension(s). More...
     
    subroutine piodarray::read_darray_2d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 2 dimension(s). More...
     
    subroutine piodarray::read_darray_3d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 3 dimension(s). More...
     
    subroutine piodarray::read_darray_4d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 4 dimension(s). More...
     
    subroutine piodarray::read_darray_5d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 5 dimension(s). More...
     
    subroutine piodarray::read_darray_6d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 6 dimension(s). More...
     
    subroutine piodarray::read_darray_7d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 7 dimension(s). More...
     
    -

    Detailed Description

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    The overloaded PIO_read_darray function reads a distributed array from disk.

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    Function/Subroutine Documentation

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    ◆ read_darray_1d_double()

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    subroutine piodarray::read_darray_1d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type double from a netCDF variable of 1 dimension(s).

    -
    Parameters
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    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
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    ◆ read_darray_1d_int()

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    subroutine piodarray::read_darray_1d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type int from a netCDF variable of 1 dimension(s).

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
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    ◆ read_darray_1d_real()

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    subroutine piodarray::read_darray_1d_real (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r4), dimension(:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type real from a netCDF variable of 1 dimension(s).

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
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    ◆ read_darray_2d_double()

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    subroutine piodarray::read_darray_2d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type double from a netCDF variable of 2 dimension(s).

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    Parameters
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    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
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    ◆ read_darray_2d_int()

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    subroutine piodarray::read_darray_2d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type int from a netCDF variable of 2 dimension(s).

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    Parameters
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    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
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    ◆ read_darray_2d_real()

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    subroutine piodarray::read_darray_2d_real (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r4), dimension(:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type real from a netCDF variable of 2 dimension(s).

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    Parameters
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    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
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    ◆ read_darray_3d_double()

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    subroutine piodarray::read_darray_3d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type double from a netCDF variable of 3 dimension(s).

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    Parameters
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    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
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    ◆ read_darray_3d_int()

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    subroutine piodarray::read_darray_3d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type int from a netCDF variable of 3 dimension(s).

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    -
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    ◆ read_darray_3d_real()

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    subroutine piodarray::read_darray_3d_real (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r4), dimension(:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type real from a netCDF variable of 3 dimension(s).

    -
    Parameters
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    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    -
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    ◆ read_darray_4d_double()

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    subroutine piodarray::read_darray_4d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:,:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type double from a netCDF variable of 4 dimension(s).

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    Parameters
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    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
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    ◆ read_darray_4d_int()

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    subroutine piodarray::read_darray_4d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:,:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type int from a netCDF variable of 4 dimension(s).

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    Parameters
    - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
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    ◆ read_darray_4d_real()

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    subroutine piodarray::read_darray_4d_real (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r4), dimension(:,:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type real from a netCDF variable of 4 dimension(s).

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    Parameters
    - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    -
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    ◆ read_darray_5d_double()

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    subroutine piodarray::read_darray_5d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:,:,:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type double from a netCDF variable of 5 dimension(s).

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    Parameters
    - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
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    ◆ read_darray_5d_int()

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    subroutine piodarray::read_darray_5d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:,:,:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type int from a netCDF variable of 5 dimension(s).

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    -
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    ◆ read_darray_5d_real()

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    subroutine piodarray::read_darray_5d_real (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r4), dimension(:,:,:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type real from a netCDF variable of 5 dimension(s).

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    -
    -
    - -
    -
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    ◆ read_darray_6d_double()

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    subroutine piodarray::read_darray_6d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:,:,:,:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type double from a netCDF variable of 6 dimension(s).

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    -
    -
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    ◆ read_darray_6d_int()

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    subroutine piodarray::read_darray_6d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:,:,:,:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type int from a netCDF variable of 6 dimension(s).

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    -
    -
    - -
    -
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    ◆ read_darray_6d_real()

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    subroutine piodarray::read_darray_6d_real (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r4), dimension(:,:,:,:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type real from a netCDF variable of 6 dimension(s).

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    -
    -
    - -
    -
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    ◆ read_darray_7d_double()

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    subroutine piodarray::read_darray_7d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:,:,:,:,:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type double from a netCDF variable of 7 dimension(s).

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    -
    -
    - -
    -
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    ◆ read_darray_7d_int()

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    subroutine piodarray::read_darray_7d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:,:,:,:,:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
    -
    - -

    Read distributed array of type int from a netCDF variable of 7 dimension(s).

    -
    Parameters
    - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The read data
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    -
    -
    - -
    -
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    ◆ read_darray_7d_real()

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    subroutine piodarray::read_darray_7d_real (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r4), dimension(:,:,:,:,:,:,:), intent(out) array,
    integer(i4), intent(out) iostat 
    )
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    integer function pio_nf::redef_desc (File)
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    subroutine piolib_mod::seterrorhandlingfile (file, method, oldmethod)
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     set the pio error handling method for a pio system More...
     
    subroutine piolib_mod::seterrorhandlingiosysid (iosysid, method, oldmethod)
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    By default pio handles errors internally by printing a string describing the error and calling mpi_abort. Application developers can change this behavior for calls to the underlying netcdf libraries with a call to PIO_seterrorhandling. For example if a developer wanted to see if an input netcdf format file contained the variable 'u' they might write the following 

     call pio_seterrorhandling(File, PIO_BCAST_ERROR)
- ierr =  pio_inq_varid(File, 'U', uid)
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    set the pio error handling method for a file

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    method: error handling method
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    vardescVariable description structure.
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    subroutine piodarray::write_darray_multi_1d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 1D array of type real. More...
     
    subroutine piodarray::write_darray_multi_1d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 1D array of type int. More...
     
    subroutine piodarray::write_darray_multi_1d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 1D array of type double. More...
     
    subroutine piodarray::write_darray_2d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 2D array of type real. More...
     
    subroutine piodarray::write_darray_3d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 3D array of type real. More...
     
    subroutine piodarray::write_darray_4d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 4D array of type real. More...
     
    subroutine piodarray::write_darray_5d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 5D array of type real. More...
     
    subroutine piodarray::write_darray_6d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 6D array of type real. More...
     
    subroutine piodarray::write_darray_7d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 7D array of type real. More...
     
    subroutine piodarray::write_darray_2d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 2D array of type int. More...
     
    subroutine piodarray::write_darray_3d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 3D array of type int. More...
     
    subroutine piodarray::write_darray_4d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 4D array of type int. More...
     
    subroutine piodarray::write_darray_5d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 5D array of type int. More...
     
    subroutine piodarray::write_darray_6d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 6D array of type int. More...
     
    subroutine piodarray::write_darray_7d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 7D array of type int. More...
     
    subroutine piodarray::write_darray_2d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 2D array of type double. More...
     
    subroutine piodarray::write_darray_3d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 3D array of type double. More...
     
    subroutine piodarray::write_darray_4d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 4D array of type double. More...
     
    subroutine piodarray::write_darray_5d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 5D array of type double. More...
     
    subroutine piodarray::write_darray_6d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 6D array of type double. More...
     
    subroutine piodarray::write_darray_7d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 7D array of type double. More...
     
    -

    Detailed Description

    -

    The overloaded PIO_write_darray writes a distributed array to disk.

    -

    Function/Subroutine Documentation

    - -

    ◆ write_darray_2d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_2d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    real(r8), intent(in), optional fillval 
    )
    -
    - -

    Writes a 2D array of type double.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_2d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_2d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    integer(i4), intent(in), optional fillval 
    )
    -
    - -

    Writes a 2D array of type int.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_2d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_2d_real (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r4), dimension(:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    real(r4), intent(in), optional fillval 
    )
    -
    - -

    Writes a 2D array of type real.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_3d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_3d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    real(r8), intent(in), optional fillval 
    )
    -
    - -

    Writes a 3D array of type double.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_3d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_3d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    integer(i4), intent(in), optional fillval 
    )
    -
    - -

    Writes a 3D array of type int.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_3d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_3d_real (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r4), dimension(:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    real(r4), intent(in), optional fillval 
    )
    -
    - -

    Writes a 3D array of type real.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_4d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_4d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:,:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    real(r8), intent(in), optional fillval 
    )
    -
    - -

    Writes a 4D array of type double.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_4d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_4d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:,:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    integer(i4), intent(in), optional fillval 
    )
    -
    - -

    Writes a 4D array of type int.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_4d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_4d_real (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r4), dimension(:,:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    real(r4), intent(in), optional fillval 
    )
    -
    - -

    Writes a 4D array of type real.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_5d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_5d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:,:,:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    real(r8), intent(in), optional fillval 
    )
    -
    - -

    Writes a 5D array of type double.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_5d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_5d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:,:,:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    integer(i4), intent(in), optional fillval 
    )
    -
    - -

    Writes a 5D array of type int.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_5d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_5d_real (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r4), dimension(:,:,:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    real(r4), intent(in), optional fillval 
    )
    -
    - -

    Writes a 5D array of type real.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_6d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_6d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:,:,:,:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    real(r8), intent(in), optional fillval 
    )
    -
    - -

    Writes a 6D array of type double.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_6d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_6d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:,:,:,:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    integer(i4), intent(in), optional fillval 
    )
    -
    - -

    Writes a 6D array of type int.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_6d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_6d_real (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r4), dimension(:,:,:,:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    real(r4), intent(in), optional fillval 
    )
    -
    - -

    Writes a 6D array of type real.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_7d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_7d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:,:,:,:,:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    real(r8), intent(in), optional fillval 
    )
    -
    - -

    Writes a 7D array of type double.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_7d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_7d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:,:,:,:,:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    integer(i4), intent(in), optional fillval 
    )
    -
    - -

    Writes a 7D array of type int.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_7d_real()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_7d_real (type (file_desc_t), intent(inout) File,
    type (var_desc_t), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r4), dimension(:,:,:,:,:,:,:), intent(in) array,
    integer(i4), intent(out) iostat,
    real(r4), intent(in), optional fillval 
    )
    -
    - -

    Writes a 7D array of type real.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_multi_1d_double()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_multi_1d_double (type (file_desc_t), intent(inout) File,
    type (var_desc_t), dimension(:), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    real(r8), dimension(:), intent(in), target array,
    integer(i4), intent(out) iostat,
    real(r8), intent(in), optional, target fillval 
    )
    -
    - -

    Writes a 1D array of type double.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_multi_1d_int()

    - -
    -
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    subroutine piodarray::write_darray_multi_1d_int (type (file_desc_t), intent(inout) File,
    type (var_desc_t), dimension(:), intent(inout) varDesc,
    type (io_desc_t), intent(inout) ioDesc,
    integer(i4), dimension(:), intent(in), target array,
    integer(i4), intent(out) iostat,
    integer(i4), intent(in), optional, target fillval 
    )
    -
    - -

    Writes a 1D array of type int.

    -
    Parameters
    - - - - - - - -
    Filefile_desc_t
    varDescvar_desc_t
    ioDescio_desc_t
    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
    -
    -
    - -
    -
    - -

    ◆ write_darray_multi_1d_real()

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    type (var_desc_t), dimension(:), intent(inout) varDesc,
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    real(r4), dimension(:), intent(in), target array,
    integer(i4), intent(out) iostat,
    real(r4), intent(in), optional, target fillval 
    )
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    Writes a 1D array of type real.

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    Parameters
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    array: The data to be written
    iostat: The status returned from this routine (see PIO_seterrorhandling for details)
    fillval: An optional fill value to fill holes in the data written
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    The Parallel IO libraries (PIO) are high-level parallel I/O C and Fortran libraries for structured grid applications. PIO provides a netCDF-like API, and allows users to designate some subset of processors to perform IO. Computational code calls netCDF-like functions to read and write data, and PIO uses the IO processors to perform all necessary IO.

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    PIO also supports the creation of multiple computation components, each containing many processors, and one shared set of IO processors. The computational components can perform write operation asynchronously, and the IO processors will take care of all storage interaction.

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    This user's guide provides information about the PIO library and examples on how it can be used. Please watch the PIO GitHub site [https://github.com/NCAR/ParallelIO] for announcements and new releases.

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    The PIO code is currently stored on github at https://github.com/PARALLELIO/ParallelIO. For questions about downloading or developing this code, consult the CIME Git Wiki or email jedwa.nosp@m.rds@.nosp@m.ucar..nosp@m.edu.

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    Dependencies

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    PIO can use NetCDF (version 4.6.1+) and/or PnetCDF (version 1.9.0+) for I/O. Ideally, the NetCDF version should be built with MPI, which requires that it be linked with an MPI-enabled version of HDF5. Optionally, NetCDF can be built with DAP support, which introduces a dependency on CURL. Additionally, HDF5, itself, introduces dependencies on LIBZ and (optionally) SZIP.

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    Configuring with CMake

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    To configure the build, PIO requires CMake version 2.8.12+. The typical configuration with CMake can be done as follows:

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    where mpicc and mpif90 are the appropriate MPI-enabled compiler wrappers for your system.

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    For each dependency XXX, one can specify the location of its installation path with the CMake variable XXX_PATH. If the C and Fortran libraries for the dependency are installed in different locations (such as can be done with NetCDF), then you can specify individually XXX_C_PATH and XXX_Fortran_PATH. Hence, you can specify the locations of both NetCDF-C and NetCDF-Fortran, as well as PnetCDF, with the following CMake configuration line:

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-           /path/to/pio/source
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    This works for the dependencies: NetCDF, PnetCDF, HDF5, LIBZ, SZIP.

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    For specific instructions to install on various commonly used super computers, please read the walk-through guide to PIO Installation.

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    Additional CMake Options

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    Additional configuration options can be specified on the command line.

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    The PIO_ENABLE_TIMING option can be set to ON or OFF to enable or disable the use of GPTL timing in the PIO libraries. This feature requires the GPTL C library for the PIO C library and the GPTL Fortran library with the perf_mod.mod and perf_utils.mod interface modules. If these GPTL libraries are already installed on the system, the user can point PIO to the location of these libraries with the GPTL_PATH variable (or, individually, GPTL_C_PATH and GPTL_Fortran_Perf_PATH variables). However, if these GPTL libraries are not installed on the system, and GPTL cannot be found, then PIO will build its own internal version of GPTL.

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    If PnetCDF is not installed on the system, the user can disable its use by setting -DWITH_PNETCDF=OFF. This will disable the search for PnetCDF on the system and disable the use of PnetCDF from within PIO.

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    If the user wishes to disable the PIO tests, then the user can set the variable -DPIO_ENABLE_TESTS=OFF. This will entirely disable the CTest testing suite, as well as remove all of the test build targets.

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    If you wish to install PIO in a safe location for use later with other software, you may set the CMAKE_INSTALL_PREFIX variable to point to the desired install location.

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    Building

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    Once you have successfully configured PIO with CMake in a build directory. From within the build directory, build PIO with:

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    This will build the pioc and piof libraries.

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    Testing

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    If you desire to do testing, and PIO_ENABLE_TESTS=ON (which is the default setting), you may build the test executables with:

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    Once the tests have been built, you may run tests with:

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    Note: If you have not run make tests before you run ctest, then you will see all of the tests fail.

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    Alternatively, you may build the test executables and then run tests immediately with:

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    (similar to the typical make check Autotools target).

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    ANOTHER NOTE:* These tests are designed to run in parallel. If you are on one of the supported supercomputing platforms (i.e., NERSC, NWSC, ALCF, etc.), then the ctest command will assume that the tests will be run in an appropriately configured and scheduled parallel job. This can be done by requesting an interactive session from the login nodes and then running ctest from within the interactive terminal. Alternatively, this can be done by running the ctest command from a job submission script. It is important to understand, however, that ctest itself will preface all of the test executable commands with the appropriate mpirun/mpiexec/runjob/etc. Hence, you should not further preface the ctest command with these MPI launchers.

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    Installing

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    Once you have built the PIO libraries, you may install them in the location specified by the CMAKE_INSTALL_PREFIX. To do this, simply type:

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    > make install
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    If the internal GPTL libraries were built (because GPTL could not be found and the PIO_ENABLE_TIMING variable is set to ON), then these libraries will be installed with PIO.

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    Examples

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    From within the build directory, build the PIO examples with:

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    This will build the C and Fortran examples in under the examples subdirectory.

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    -
    -
    Install Walk-through
    -
    -
    -

    This document provides specific instructions for installing PIO using a variety of compilers on a few commonly used super computers. Click on the link below to go directly to the machine of interest.

    -
      -
    • Yellowstone (NCAR's 1.5-petaflop IBM Supercomputer)
      • -
    • Edison (A NERSC Cray XC30 Supercomputer)
      • -
    • Mira (IBM Blue Gene Supercomputer at ALCF)
      • -
    • Blue Waters (NCSA's 1.3-petaflop Cray Supercomputer)
      • -
    • Hobart (The NCAR CGD local cluster)
      • -
    • Linux with MPICH (Standard Linux box with MPICH)
      • -
    -

    Yellowstone

    -
      -
    1. -

      Directory setup

      -

      Download a copy of the PIO source into a sub-directory of your working directory (refered to here as the PIO_source directory). Create another sub-directory for the build (refered to here as the PIO_build directory) and 'cd' into it.

      -

      -
      2. -
    2. -

      Modules

      -

      Modules required for installation depend on your prefered compiler. Issue the commands below to set the module environment for building PIO on Yellowstone.

      -
        -

      • Intel

        -

        %> module reset
        - %> module unload netcdf
        - %> module swap intel intel/15.0.3
        - %> module load git/2.3.0
        - %> module load cmake/3.0.2
        - %> module load netcdf-mpi/4.3.3.1
        - %> module load pnetcdf/1.6.1
        -

        -
        • -

      • GNU

        -

        %> module reset
        - %> module unload netcdf
        - %> module swap intel gnu/4.8.2
        - %> module load git/2.3.0
        - %> module load cmake/3.0.2
        - %> module load netcdf-mpi/4.3.3.1
        - %> module load pnetcdf/1.6.1
        -

        -
        • -

      • PGI

        -

        %> module reset
        - %> module unload netcdf
        - %> module swap intel pgi/13.3
        - %> module load git/2.3.0
        - %> module load cmake/3.0.2
        - %> module load netcdf-mpi/4.3.3.1
        - %> module load pnetcdf/1.6.1
        -

        -
        • -
      -

      -
      3. -
    3. -

      Environment Variables

      -

      The appropriate compiler wrappers must be chosen for cmake, so the environment variables CC and FC must be set as:
      - CC=mpicc
      - FC=mpif90
      -

      -

      -
      4. -
    4. -

      Build

      -

      Building PIO requires running the CMake configure and then make. In the PIO_build directory type
      - %> cmake ../PIO_source/
      - %> make
      -

      -
      5. -
    -

    Edison

    -
      -
    1. -

      Directory setup

      -

      Download a copy of the PIO source into a sub-directory of your working directory (refered to here as the PIO_source directory). Create another sub-directory for the build (refered to here as the PIO_build directory) and 'cd' into it.

      -

      -
      2. -
    2. -

      Modules

      -

      Modules required for installation depend on your prefered compiler. Issue the commands below to set the module environment for building PIO on Edison.

      -
        -

      • Intel

        -

        %> module purge
        - %> module load PrgEnv-intel
        - %> module load craype-ivybridge
        - %> module load cray-shmem
        - %> module load cray-mpich
        - %> module load torque
        - %> module load git/2.4.6
        - %> module load cmake/3.0.0
        - %> module load cray-hdf5-parallel/1.8.14
        - %> module load cray-netcdf-hdf5parallel/4.3.3.1
        - %> module load cray-parallel-netcdf/1.6.1
        -

        -
        • -

      • GNU

        -

        %> module purge
        - %> module load PrgEnv-gnu
        - %> module load craype-ivybridge
        - %> module load cray-shmem
        - %> module load cray-mpich
        - %> module load torque
        - %> module load git/2.4.6
        - %> module load cmake/3.0.0
        - %> module load cray-hdf5-parallel/1.8.14
        - %> module load cray-netcdf-hdf5parallel/4.3.3.1
        - %> module load cray-parallel-netcdf/1.6.1
        -

        -
        • -

      • Cray

        -

        %> module purge
        - %> module load PrgEnv-cray
        - %> module load craype-ivybridge
        - %> module load cray-shmem
        - %> module load cray-mpich
        - %> module swap cce cce/8.4.0.223
        - %> module load torque
        - %> module load git/2.4.6
        - %> module load cmake/3.0.0
        - %> module load cray-hdf5-parallel/1.8.14
        - %> module load cray-netcdf-hdf5parallel/4.3.3.1
        - %> module load cray-parallel-netcdf/1.6.1
        -

        -
        • -
      -

      -
      3. -
    3. -

      Environment Variables

      -

      The appropriate compiler wrappers must be chosen for cmake, so the environment variables CC and FC must be set as:
      - CC=cc
      - FC=ftn
      -

      -

      -
      4. -
    4. -

      Build

      -

      Building PIO requires running the CMake configure and then make. In the PIO_build directory type
      - %> cmake -DCMAKE_VERBOSE_MAKEFILE=TRUE \
      - -DPREFER_STATIC=TRUE \
      - -DNetCDF_PATH=${NETCDF_DIR} \
      - -DPnetCDF_PATH=${PARALLEL_NETCDF_DIR} \
      - -DHDF5_PATH=${HDF5_DIR} \
      - -DMPI_C_INCLUDE_PATH=${MPICH_DIR}/include \
      - -DMPI_Fortran_INCLUDE_PATH=${MPICH_DIR}/include \
      - -DMPI_C_LIBRARIES=${MPICH_DIR}/lib/libmpich.a \
      - -DMPI_Fortran_LIBRARIES=${MPICH_DIR}/lib/libmpichf90.a \
      - -DCMAKE_SYSTEM_NAME=Catamount \
      - ../PIO_source/
      - %> make

      -

      -
      5. -
    -

    Mira/Cetus

    -
      -
    1. -

      Directory setup

      -

      Download a copy of the PIO source into a sub-directory of your working directory (refered to here as the PIO_source directory). Create another sub-directory for the build (refered to here as the PIO_build directory) and 'cd' into it.

      -

      -
      2. -
    2. -

      Softenv packages and environment variables

      -

      It is not necessary to edit your .soft file on Mira inorder to build PIO. Execute the following commands to temporarily load packages into your softenv. These packages use the IBM/XL compiler.
      - %> soft add +mpiwrapper-xl (or switch from the default in your softenv)
      - %> soft add @ibm-compilers-2015-02
      - %> soft add +cmake
      - %> soft add +git
      -

      -

      And then set the following environment variables to add in the rest of the library paths.
      - %> setenv LIBZ /soft/libraries/alcf/current/xl/ZLIB
      - %> setenv HDF5 /soft/libraries/hdf5/1.8.14/cnk-xl/V1R2M2-20150213
      - %> setenv NETCDF /soft/libraries/netcdf/4.3.3-f4.4.1/cnk-xl/V1R2M2-20150213
      - %> setenv PNETCDF /soft/libraries/pnetcdf/1.6.1/cnk-xl/V1R2M2-20150213
      - %> setenv CC /soft/compilers/wrappers/xl/mpixlc_r
      - %> setenv FC /soft/compilers/wrappers/xl/mpixlf90_r
      -

      -

      -
      3. -
    3. -

      Build

      -

      Building PIO requires running the CMake configure and then make. In the PIO_build directory type
      - %> cmake -DPREFER_STATIC=TRUE ../PIO_source/
      - %> make

      -

      -
      4. -
    -

    Blue Waters

    -
      -
    1. -

      Directory setup

      -

      Download a copy of the PIO source into a sub-directory of your working directory (refered to here as the PIO_source directory). Create another sub-directory for the build (refered to here as the PIO_build directory) and 'cd' into it.

      -

      -
      2. -
    2. -

      Modules

      -

      Modules required for installation depend on your prefered compiler. Issue the commands below to set the module environment for building PIO on Hobart.

      -
        -

      • Intel

        -

        %> module swap PrgEnv-cray PrgEnv-intel
        - %> module load torque
        - %> module load git
        - %> module load cmake
        - %> module load cray-hdf5-parallel/1.8.14
        - %> module load cray-netcdf-hdf5parallel/4.3.3.1
        - %> module load cray-parallel-netcdf/1.6.1
        -

        -
        • -

      • PGI

        -

        %> module swap PrgEnv-cray PrgEnv-pgi
        - %> module load torque
        - %> module load git
        - %> module load cmake
        - %> module load cray-hdf5-parallel/1.8.14
        - %> module load cray-netcdf-hdf5parallel/4.3.3.1
        - %> module load cray-parallel-netcdf/1.6.1
        -

        -
        • -
      -

      -
      3. -
    3. -

      Environment Variables

      -

      The appropriate compiler wrappers must be chosen for cmake, so the environment variables CC and FC must be set as:
      - CC=cc
      - FC=ftn
      -

      -

      -
      4. -
    4. -

      Build

      -

      Building PIO requires running the CMake configure and then make. In the PIO_build directory type
      - %> cmake -DCMAKE_VERBOSE_MAKEFILE=TRUE \
      - -DPREFER_STATIC=TRUE \
      - -DNetCDF_PATH=${NETCDF_DIR} \
      - -DPnetCDF_PATH=${PARALLEL_NETCDF_DIR} \
      - -DHDF5_PATH=${HDF5_DIR} \
      - -DMPI_C_INCLUDE_PATH=${MPICH_DIR}/include \
      - -DMPI_Fortran_INCLUDE_PATH=${MPICH_DIR}/include \
      - -DMPI_C_LIBRARIES=${MPICH_DIR}/lib/libmpich.a \
      - -DMPI_Fortran_LIBRARIES=${MPICH_DIR}/lib/libmpichf90.a \
      - -DCMAKE_SYSTEM_NAME=Catamount \
      - ../PIO_source/
      - %> make

      -

      -
      5. -
    -

    Hobart

    -
      -
    1. -

      Directory setup

      -

      Download a copy of the PIO source into a sub-directory of your working directory (refered to here as the PIO_source directory). Create another sub-directory for the build (refered to here as the PIO_build directory) and 'cd' into it.

      -

      -
      2. -
    2. -

      Modules

      -

      Modules required for installation depend on your prefered compiler. Issue the commands below to set the module environment for building PIO on Hobart.

      -
        -

      • Intel

        -

        %> module purge
        - %> module load compiler/intel/15.0.2.164
        - %> module load tool/parallel-netcdf/1.6.1/intel
        -

        -
        • -

      • Nag

        -

        %> module purge
        - %> module load compiler/nag/6.0
        - %> module load tool/parallel-netcdf/1.6.1/nag/openmpi
        -

        -
        • -

      • PGI

        -

        %> module purge
        - %> module load compiler/pgi/15.1
        - %> module load tool/parallel-netcdf/1.6.1/pgi/mvapich2
        -

        -
        • -
      -

      -
      3. -
    3. -

      Environment Variables

      -

      The appropriate compiler wrappers must be chosen for cmake, so the environment variables CC and FC must be set as:
      - CC=mpicc
      - FC=mpif90
      -

      -

      -
      4. -
    4. -

      Build

      -

      Building PIO requires running the CMake configure and then make. In the PIO_build directory type
      - %> cmake -DNETCDF_DIR=$NETCDF_PATH -DPNETCDF_DIR=$PNETCDF_PATH ../PIO_source/
      - %> make

      -

      ParallelIO does not require Parallel netcdf to run, so if you decide to use the GNU compiler on Hobart (not described here) without the parallel-netcdf library, use the cmake configure flags:
      - %> cmake -DNETCDF_DIR=$NETCDF_PATH -DWITH_PNETCDF=FALSE ../PIO_source/
      - %> make

      -

      -
      5. -
    -

    Linux with MPICH

    -
      -
    1. -

      Installing MPICH

      -

      -

      Download from the MPICH2 downloads page. (These instructions were tested using version 3.2). Untar with: 

      tar zxf mpich-3.2.tar.gz

      -

      Build with: 

      cd mpich-3.2 && ./configure --prefix=/usr/local && make all check
-&& sudo make install

      -

      Now you should be able to access mpicc, mpifort, and mpirun from the command line. (If not, make sure /usr/local/bin is in path.)

      -

      -

      Note that if you wish to use valgrind on your programs, you should configure MPICH like this: 

      CPPFLAGS=-I/usr/include/valgrind ./configure --prefix=/usr/local --enable-g=mem,meminit

      -

      For this to work you must have packages valgrind and valgrind-devel installed.

      -

      -
      2. -
    2. -

      Installing Zlib

      -

      -

      Download from the zlib downloads page. (These instructions were tested using version 1.2.11). Untar with: 

      tar zxf zlib-1.2.11.tar.gz

      -

      Build with: 

      cd zlib-1.2.11
-CC=mpicc ./configure --prefix=/usr/local/zlib-1.2.11_mpich-3.2
-make all check
-sudo make install

      -
      3. -
    3. -

      Installing SZlib

      -

      -

      Download szlib from the HDF5 szlib page. (These instructions were tested using version 2.1). Untar with: 

      tar zxf szip-2.1.tar.gz

      -

      Build with: 

      cd slib-2.1
-CC=mpicc ./configure --prefix=/usr/local/szip-2.1_mpich-3.2
-make all check
-sudo make install

      -
      4. -
    4. -

      Installing pNetCDF

      -

      -

      Download parallel-netcdf from the parallel-netcdf download page. (These instructions were tested using version 1.8.1). Untar with: 

      tar zxf parallel-netcdf-1.8.1.tar.gz

      -

      Build with: 

      cd parallel-netcdf-1.8.1
-FC=mpifort CC=mpicc CFLAGS=-fPIC ./configure --prefix=/usr/local/pnetcdf-1.8.1_mpich-3.2
-make all check
-sudo make install

      -
      5. -
    5. -

      Installing HDF5

      -

      -

      Download HDF5 from the HDF5 download page.

      -

      -

      These instructions were tested using version 1.10.1. Untar with: 

      tar zxf hdf5-1.10.1.tar.gz

      . Note that in my case I need to add /usr/local/bin to the PATH for su, because that is where mpicc is found.

      -

      -

      Build with: 

      cd hdf5-1.10.1
-CC=mpicc ./configure --with-zlib=/usr/local/zlib-1.2.11_mpich-3.2 --with-szlib=/usr/local/szip-2.1_mpich-3.2 --prefix=/usr/local/hdf5-1.10.1_mpich-3.2 --enable-parallel
-make all check
-sudo PATH=$PATH:/usr/local/bin make install

      -
      6. -
    6. -

      Installing NetCDF-4 C Library

      -

      -

      Download the netcdf C library from the NetCDF download page. Untar with: 

      tar zxf netcdf-c-4.5.0-rc1.tar.gz

      -

      Build with: 

      cd netcdf-c-4.5.0-rc1
-CPPFLAGS='-I/usr/local/zlib-1.2.11_mpich-3.2 -I/usr/local/szip-2.1_mpich-3.2/include -I/usr/local/hdf5-1.10.1_mpich-3.2/include' LDFLAGS='-L/usr/local/zlib-1.2.11_mpich-3.2/lib -L/usr/local/szip-2.1_mpich-3.2/lib -L/usr/local/hdf5-1.10.1_mpich-3.2/lib' CC=mpicc ./configure --enable-parallel-tests --prefix=/usr/local/netcdf-4.4.1_mpich-3.2
-make all check
-sudo make install

      -

      Note that you may not build netCDF with it's built-in parallel-netCDF support, if you are also planning to use the parallel-netCDF library with PIO. For PIO, parallel-netCDF must be installed independently of netCDF.

      -

      -
      7. -
    7. -

      Installing NetCDF-4 Fortran Library

      -

      -

      Download the netcdf Fortran library from the NetCDF download page. Untar with: 

      tar zxf netcdf-fortran-4.4.4.tar.gz

      -

      Build with: 

      cd netcdf-fortran-4.4.4
-CC=mpicc LD_LIBRARY_PATH=/usr/local/netcdf-4.4.1_mpich-3.2/lib FC=mpifort CPPFLAGS=-I/usr/local/netcdf-4.4.1_mpich-3.2/include LDFLAGS=-L/usr/local/netcdf-4.4.1_mpich-3.2/lib ./configure --enable-parallel-tests --prefix=/usr/local/netcdf-fortran-4.4.4_c_4.4.1_mpich-3.2
-make all
-sudo make install

      -

      Note that make check did not work because of a failure in a test. This has been reported to the netCDF team.

      -

      -
      8. -
    8. -

      Installing ParallelIO Library

      -

      -

      Clone the ParallelIO library.

      -

      -

      Create a build directory and run cmake. 

      -cd ParallelIO
-mkdir build
-cd build
-CC=mpicc FC=mpifort cmake -DNetCDF_C_PATH=/usr/local/netcdf-4.4.1_mpich-3.2 -DNetCDF_Fortran_PATH=/usr/local/netcdf-fortran-4.4.4_c_4.4.1_mpich-3.2 -DPnetCDF_PATH=/usr/local/pnetcdf-1.8.1_mpich-3.2 -DPIO_HDF5_LOGGING=On -DPIO_USE_MALLOC=On ..
-make
-make check
-sudo make install
-

      -

      When debugging build issues, it's helpful to be able to do a clean build from the command line, including tests:

      -
      -cd build
-rm -rf * && CFLAGS='-Wall -g' FFLAGS=-g CC=mpicc FC=mpifort cmake -DNetCDF_C_PATH=/usr/local/netcdf-4.4.1_mpich-3.2 -DNetCDF_Fortran_PATH=/usr/local/netcdf-fortran-4.4.4_c_4.4.1_mpich-3.2 -DPnetCDF_PATH=/usr/local/pnetcdf-1.8.1_mpich-3.2 -DPIO_HDF5_LOGGING=On -DPIO_USE_MALLOC=On -DPIO_ENABLE_LOGGING=On .. && make VERBOSE=1 all tests check
-

      -

      To build with address sanitizer:

      -
      -rm -rf * && CFLAGS='-Wall -g  -fsanitize=address -fno-omit-frame-pointer' FFLAGS='-g  -fsanitize=address -fno-omit-frame-pointer' CC=mpicc FC=mpifort cmake -DNetCDF_C_PATH=/usr/local/netcdf-4.4.1_mpich-3.2 -DNetCDF_Fortran_PATH=/usr/local/netcdf-fortran-4.4.4_c_4.4.1_mpich-3.2 -DPnetCDF_PATH=/usr/local/pnetcdf-1.8.1_mpich-3.2 -DPIO_HDF5_LOGGING=On -DPIO_USE_MALLOC=On -DPIO_ENABLE_LOGGING=On .. && make VERBOSE=1 all tests check
-

      -

      Note the optional CFLAGS=-g which allows the use of a debugger with this code. Also note the optional VERBOSE=1 provided to make, which causes the build commands to be made visible.

      -

      -

      Note also the -DPIO_ENABLE_LOGGING=On which is helpful for debugging but should probably not be used in production builds.

      -

      -
      9. -
    9. -

      Building PIO with autotools.

      -

      -

      To build the PIO library with autotools, clone the repo and use a command like this:

      -
      -autoreconf -i && LD_LIBRARY_PATH=/usr/local/netcdf-4.4.1_mpich-3.2/lib CC=mpicc CFLAGS='-g' CPPFLAGS='-I/usr/local/netcdf-4.4.1_mpich-3.2/include/ -I/usr/local/pnetcdf-1.8.1_mpich-3.2/include' LDFLAGS='-L/usr/local/netcdf-4.4.1_mpich-3.2/lib -L/usr/local/pnetcdf-1.8.1_mpich-3.2/lib' ./configure && make check
-

      -

      To build with debug logging and the address sanitizer for memory checking (debugging builds only!):

      -
      -autoreconf -i && LD_LIBRARY_PATH=/usr/local/netcdf-4.4.1_mpich-3.2/lib CC=mpicc CFLAGS='-g -fsanitize=address -fno-omit-frame-pointer' CPPFLAGS='-I/usr/local/netcdf-4.4.1_mpich-3.2/include/ -I/usr/local/pnetcdf-1.8.1_mpich-3.2/include' LDFLAGS='-L/usr/local/netcdf-4.4.1_mpich-3.2/lib -L/usr/local/pnetcdf-1.8.1_mpich-3.2/lib' ./configure --enable-logging && make check
-

      -
      10. -
    10. -

      Building and Running Performance Tests

      -

      -

      Download a decomp file from our google code page. You can use any of those files, save them to build/test/performance. (These instructions were tested with the first one in the list.)

      -

      -

      Create a namelist file, named "pioperf.nl". Save this file in the subdirectory (note that it is in the BUILD directory): 

      -build/tests/performance/
-

      -

      The contents of the namelist file should look like: 

      -&pioperf
-decompfile = "/u/sciteam/thayerca/scratch/pio_work/piodecomp30tasks01dims06.dat"
-pio_typenames = 'pnetcdf'
-niotasks = 30
-rearrangers = 1
-nvars = 2
-/
-

      -

      You should change the path to your decomp file to wherever you saved it. You can add items to the list to run more tests, so, for instance, to test all of the types of io, your pio_typenames would look like: pio_typenames = 'pnetcdf','netcdf','netcdf4p','netcdf4c'

      -

      -

      HDF5 is netcdf4p, and Parallel-Netcdf is pnetcdf.

      -

      -

      Example to test with different numbers of tasks, you could do: niotasks = 30,15,5

      -

      -

      Example to test with both of the rearranger algorithms: rearrangers = 1,2

      -

      -

      Example to test with different numbers of variables: nvars = 8,5,3,2

      -

      -

      Once you have your decomp file and your namelist set up, run like this:

      -
      -mpiexec -n 30 ./pioperf
-

      -

      If you run the most basic performance tests (as in the first pioperf.nl example), this script should only take a few minutes (less than 5) to complete. The output and results will be written to your pioperf.o$PBS_JOBID file. Adding more iotypes and rearrangers and variables to these tests will increase the time significantly.

      -

      -
      11. -
    -

    Last updated: 05-16-2016

    -
    - -
    -Generated on Wed May 22 2019 15:09:23 for PIO by   -doxygen - 1.8.13 -
    - - diff --git a/docs/menu.js b/docs/menu.js deleted file mode 100644 index 97db4c23922..00000000000 --- a/docs/menu.js +++ /dev/null @@ -1,26 +0,0 @@ -function initMenu(relPath,searchEnabled,serverSide,searchPage,search) { - function makeTree(data,relPath) { - var result=''; - if ('children' in data) { - result+=''; - } - return result; - } - - $('#main-nav').append(makeTree(menudata,relPath)); - $('#main-nav').children(':first').addClass('sm sm-dox').attr('id','main-menu'); - if (searchEnabled) { - if (serverSide) { - $('#main-menu').append('
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     Learn About File Contents
     Learn Length of a Data Type
     Learn About File Binary Format
     Learn About Dimensions
     Learn About a Variable
     Learn About an Attribute
     Rename a Dimension
     Rename a Variable
     Rename an Attribute
     Delete an Attribute
     Set Fill Value
     End Define Mode
     Re-enter Define Mode
     Define a Dimension
     Define a Variable
     Reading a Variable into Distributes Arrays
     Writing Distributes Arrays into a Variable
     Initialize the IO System
     Shut Down the IO System
     Initialize a Decomposition
     Free a Decomposition
     Set the Record Number
     Set an MPI Hint
     Set the Error Handling
     Get the Local Array Size
     Is this IO System Active?
     Get the Number of IO Tasks
     Set the Blocksize
     Open a File
     Create a File
     Sync a File
     Close a File
     PIO_write_darrayThe overloaded PIO_write_darray writes a distributed array to disk
     PIO_read_darrayThe overloaded PIO_read_darray function reads a distributed array from disk
     PIO_set_blocksize
     PIO_openfile
     PIO_syncfile
     PIO_createfile
     PIO_setframeSets the unlimited dimension for netcdf file
     PIO_advanceframe
     PIO_closefile
     PIO_freedecompFree memory associated with a io descriptor
     PIO_initInitializes the pio subsystem
     PIO_finalizeShuts down and cleans up any memory associated with the pio library
     PIO_initdecompPIO_initdecomp is an overload interface the models decomposition to pio
     PIO_getnumiotasksReturns the actual number of IO-tasks used
     PIO_setdebuglevelSets the level of debug information that pio will generate
     PIO_seterrorhandlingSets the form of error handling for pio
     PIO_get_local_array_size
     PIO_set_hint
     PIO_put_attWrites an netcdf attribute to a file
     PIO_get_attReads an netcdf attribute from a file
     PIO_inq_dimid
     PIO_inquire_dimension
     PIO_inq_dimlen
     PIO_inq_dimname
     PIO_inq_ndims
     PIO_inq_nvars
     PIO_inq_natts
     PIO_inq_unlimdim
     PIO_inquire
     PIO_enddef
     PIO_redef
     PIO_set_log_level
     PIO_strerror
     PIO_def_dimA set of functions to define dimensions and their attributes in NetCDF files
     PIO_inquire_variable
     PIO_inq_vardimid
     PIO_inq_varndims
     PIO_inq_vartype
     PIO_inq_varnatts
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     PIO_inq_varname
     PIO_inq_varid
     PIO_inq_attlen
     PIO_inq_att
     PIO_inq_attname
     PIO_def_var
     PIO_get_varReads non-decomposed data from a NetCDF file
     PIO_put_varWrites data to a netCDF file
     io descriptors, generatingThe io descriptor structure in defined in this subroutine and subsequently used in PIO_read_darray, PIO_write_darray, PIO_put_var, PIO_get_var calls (see pio_types)
     PIO_iotypeAn integer parameter which controls the iotype
     PIO_rearr_methodThe three choices to control rearrangement are:
     error_methods
     error return codes: The error return code; ierr != PIO_noerr indicates an error
     PIO_kindsThe base types supported by PIO are:
     PIO_rearr_comm_tThe two choices for rearranger communication
     PIO_rearr_comm_dirThe four choices for rearranger communication direction
     PIO_rearr_comm_fc_optionsType that defines the PIO rearranger options
     PIO_rearr_optionsType that defines the PIO rearranger options
     Get Attribute Values
     Write an Attribute
     Get Data from a Variable
     Write Data to a Variable
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    [detail level 12]
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     PIO Fortran Interface
     PIO C Interface
     Guide for Contributors
     Describing decompositions
     Error Handling
     ▼Examples
     Community Atmosphere Model (CAM)
     testpio: a regression and benchmarking code
     Frequently Asked Questions
     Introduction
     Installing PIO
     Install Walk-through
     Testing
     Deprecated List
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    -subroutine pio::pio_set_blocksize (blocksize)
     Set the target blocksize for the box rearranger.
     
    logical function pio::pio_iam_iotask (iosystem)
     Logical function returns true if the task is an IO task. More...
     
    integer function pio::pio_iotask_rank (iosystem)
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    subroutine pio::pio_iosystem_is_active (iosystem, active)
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    -integer, parameter, public pio_kinds::char_len = 360
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    -integer, parameter, public pio_kinds::log_kind = kind(.true.)
     logical kind
     
    -integer, parameter, public pio_kinds::int_kind = kind(1)
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    -integer, parameter, public pio_kinds::i4 = selected_int_kind(6)
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    -integer, parameter, public pio_kinds::i8 = selected_int_kind(13)
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    -integer, parameter, public pio_kinds::r4 = selected_real_kind(6)
     r4 kind
     
    -integer, parameter, public pio_kinds::r8 = selected_real_kind(13)
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    integer, parameter, public pio_kinds::pio_offset_kind =MPI_OFFSET_KIND
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    int PIOc_def_var_deflate (int ncid, int varid, int shuffle, int deflate, int deflate_level)
     Set deflate (zlib) settings for a variable. More...
     
    int PIOc_inq_var_deflate (int ncid, int varid, int *shufflep, int *deflatep, int *deflate_levelp)
     This function only applies to netCDF-4 files. More...
     
    int PIOc_def_var_chunking (int ncid, int varid, int storage, const PIO_Offset *chunksizesp)
     Set chunksizes for a variable. More...
     
    int PIOc_inq_var_chunking (int ncid, int varid, int *storagep, PIO_Offset *chunksizesp)
     Inquire about chunksizes for a variable. More...
     
    int PIOc_def_var_endian (int ncid, int varid, int endian)
     Set chunksizes for a variable. More...
     
    int PIOc_inq_var_endian (int ncid, int varid, int *endianp)
     Inquire about chunksizes for a variable. More...
     
    int PIOc_set_chunk_cache (int iosysid, int iotype, PIO_Offset size, PIO_Offset nelems, float preemption)
     Set chunk cache netCDF files to be opened/created. More...
     
    int PIOc_get_chunk_cache (int iosysid, int iotype, PIO_Offset *sizep, PIO_Offset *nelemsp, float *preemptionp)
     Get current file chunk cache settings from HDF5. More...
     
    int PIOc_set_var_chunk_cache (int ncid, int varid, PIO_Offset size, PIO_Offset nelems, float preemption)
     Set chunksizes for a variable. More...
     
    int PIOc_get_var_chunk_cache (int ncid, int varid, PIO_Offset *sizep, PIO_Offset *nelemsp, float *preemptionp)
     Get the variable chunk cache settings. More...
     
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    Detailed Description

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    Functions to wrap netCDF-4 functions for PIO.

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    Author
    Ed Hartnett
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    subroutine, public pio_support::replace_c_null (istr, ilen)
     Remove null termination (C-style) from strings for Fortran. More...
     
    subroutine, public pio_support::piodie (file, line, msg, ival1, msg2, ival2, msg3, ival3, mpirank)
     Abort the model for abnormal termination. More...
     
    subroutine, public pio_support::checkmpireturn (locmesg, errcode, file, line)
     Check and prints an error message if an error occured in an MPI subroutine. More...
     
    subroutine, public pio_support::pio_writedof (file, gdims, DOF, comm, punit)
     Fortran interface to write a mapping file. More...
     
    subroutine, public pio_support::pio_readdof (file, ndims, gdims, DOF, comm, punit)
     Fortran interface to read a mapping file. More...
     
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    -logical, public pio_support::debug =.FALSE.
     debug mode
     
    -logical, public pio_support::debugio =.FALSE.
     IO debug mode.
     
    -logical, public pio_support::debugasync =.FALSE.
     async debug mode
     
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    Detailed Description

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    Function/Subroutine Documentation

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    ◆ checkmpireturn()

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    subroutine, public pio_support::checkmpireturn (character(len=*), intent(in) locmesg,
    integer(i4), intent(in) errcode,
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    Check and prints an error message if an error occured in an MPI subroutine.

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    line: The line number where the error message originated.
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    subroutine, public pio_support::pio_readdof (character(len=*), intent(in) file,
    integer, intent(out) ndims,
    integer, dimension(:), pointer gdims,
    integer(pio_offset_kind), dimension(:), pointer DOF,
    integer, intent(in) comm,
    integer, intent(in), optional punit 
    )
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    Fortran interface to read a mapping file.

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    file: The file from where the decomp map is read.
    ndims: The number of dimensions of the data.
    gdims: The actual dimensions of the data (pointer to an integer array of length ndims).
    DOF: Pointer to an integer array where the Decomp map will be stored.
    comm: MPI comm index
    punit: Optional argument that is no longer used.
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    integer, dimension(:), intent(in) gdims,
    integer(pio_offset_kind), dimension(:), intent(in) DOF,
    integer, intent(in) comm,
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    )
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    gdims: The dimensions of the data array in memory.
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    comm: The MPI comm index.
    punit: Optional argument that is no longer used.
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    subroutine, public pio_support::piodie (character(len=*), intent(in) file,
    integer, intent(in) line,
    character(len=*), intent(in), optional msg,
    integer, intent(in), optional ival1,
    character(len=*), intent(in), optional msg2,
    integer, intent(in), optional ival2,
    character(len=*), intent(in), optional msg3,
    integer, intent(in), optional ival3,
    integer, intent(in), optional mpirank 
    )
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    Abort the model for abnormal termination.

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    )
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    Remove null termination (C-style) from strings for Fortran.

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    -Data Types

    type  pio_types::decompmap_t
     
    type  pio_types::iosystem_desc_t
     A defined PIO system descriptor created by PIO_init (see pio_types) More...
     
    type  pio_types::file_desc_t
     File descriptor returned by PIO_openfile or PIO_createfile (see pio_types) More...
     
    type  pio_types::io_desc_t
     An io descriptor handle that is generated in PIO_initdecomp (see pio_types) More...
     
    type  pio_types::var_desc_t
     A variable descriptor returned from PIO_def_var (see pio_types) More...
     
    type  pio_types::pio_rearr_comm_fc_opt_t
     
    type  pio_types::pio_rearr_opt_t
     
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    -integer(i4), parameter, public pio_types::pio_iotype_pnetcdf = 1
     parallel read/write of pNetCDF files
     
    -integer(i4), parameter, public pio_types::pio_iotype_netcdf = 2
     serial read/write of NetCDF file using 'base_node'
     
    -integer(i4), parameter, public pio_types::pio_iotype_netcdf4c = 3
     netcdf4 (hdf5 format) file opened for compression (serial write access only)
     
    -integer(i4), parameter, public pio_types::pio_iotype_netcdf4p = 4
     netcdf4 (hdf5 format) file opened in parallel (all netcdf4 files for read will be opened this way)
     
    -integer(i4), parameter, public pio_types::iotype_pnetcdf = PIO_iotype_pnetcdf
     pnetcdf iotype
     
    -integer(i4), parameter, public pio_types::iotype_netcdf = PIO_iotype_netcdf
     netcdf iotype
     
    -integer(i4), parameter, public pio_types::pio_rearr_box = 1
     box rearranger
     
    -integer(i4), parameter, public pio_types::pio_rearr_subset = 2
     subset rearranger
     
    -integer(i4), parameter, public pio_types::pio_internal_error = -51
     abort on error from any task
     
    -integer(i4), parameter, public pio_types::pio_bcast_error = -52
     broadcast an error
     
    -integer(i4), parameter, public pio_types::pio_return_error = -53
     do nothing
     
    -integer(i4), parameter, public pio_types::pio_default = -1
     default error handler
     
    -integer, parameter, public pio_types::pio_global = 0
     global atts
     
    -integer, parameter, public pio_types::pio_double = 6
     double type
     
    -integer, parameter, public pio_types::pio_real = 5
     real type
     
    -integer, parameter, public pio_types::pio_int = 4
     int type
     
    -integer, parameter, public pio_types::pio_char = 2
     char type
     
    -integer, parameter, public pio_types::pio_noerr = 0
     no error
     
    -integer, parameter, public pio_types::pio_max_name = 25
     max name len
     
    -integer, parameter, public pio_types::pio_max_var_dims = 6
     max dims for a var
     
    -integer, parameter, public pio_types::pio_clobber = 10
     clobber existing file
     
    -integer, parameter, public pio_types::pio_noclobber = 11
     do not clobber existing file
     
    -integer, parameter, public pio_types::pio_write = 20
     read-write
     
    -integer, parameter, public pio_types::pio_nowrite = 21
     read-only
     
    -integer, parameter, public pio_types::pio_64bit_offset = 0
     64bit offset format
     
    -integer, parameter, public pio_types::pio_64bit_data = 0
     CDF5 format.
     
    -integer, parameter, public pio_types::pio_fill_int = -2147483647
     int fill value
     
    -real, parameter, public pio_types::pio_fill_float = 9.9692099683868690e+36
     float fill value
     
    -double precision, parameter, public pio_types::pio_fill_double = 9.9692099683868690e+36
     double fill value
     
    -integer, parameter, public pio_types::pio_num_ost = 16
     num ost
     
    -integer, parameter, public pio_types::pio_rearr_comm_unlimited_pend_req = -1
     unlimited requests
     
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    Detailed Description

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    Derived datatypes and constants for PIO Fortran API.

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    interface  piodarray::PIOc_write_darray_multi
     
    interface  piodarray::PIOc_read_darray
     
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    -#define __PIO_FILE__   'piodarray'
     
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    -Functions/Subroutines

    -subroutine, public piodarray::pio_set_buffer_size_limit (limit)
     
    -subroutine piodarray::write_darray_1d_cinterface_real (File, varDesc, ioDesc, arraylen, array, iostat, fillval)
     
    -subroutine piodarray::write_darray_1d_cinterface_int (File, varDesc, ioDesc, arraylen, array, iostat, fillval)
     
    -subroutine piodarray::write_darray_1d_cinterface_double (File, varDesc, ioDesc, arraylen, array, iostat, fillval)
     
    -subroutine piodarray::write_darray_multi_1d_cinterface_real (File, varDesc, ioDesc, nvars, arraylen, array, iostat, fillval)
     
    -subroutine piodarray::write_darray_multi_1d_cinterface_int (File, varDesc, ioDesc, nvars, arraylen, array, iostat, fillval)
     
    -subroutine piodarray::write_darray_multi_1d_cinterface_double (File, varDesc, ioDesc, nvars, arraylen, array, iostat, fillval)
     
    subroutine piodarray::write_darray_multi_1d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 1D array of type real. More...
     
    subroutine piodarray::write_darray_multi_1d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 1D array of type int. More...
     
    subroutine piodarray::write_darray_multi_1d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 1D array of type double. More...
     
    subroutine piodarray::write_darray_2d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 2D array of type real. More...
     
    subroutine piodarray::write_darray_3d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 3D array of type real. More...
     
    subroutine piodarray::write_darray_4d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 4D array of type real. More...
     
    subroutine piodarray::write_darray_5d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 5D array of type real. More...
     
    subroutine piodarray::write_darray_6d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 6D array of type real. More...
     
    subroutine piodarray::write_darray_7d_real (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 7D array of type real. More...
     
    subroutine piodarray::write_darray_2d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 2D array of type int. More...
     
    subroutine piodarray::write_darray_3d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 3D array of type int. More...
     
    subroutine piodarray::write_darray_4d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 4D array of type int. More...
     
    subroutine piodarray::write_darray_5d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 5D array of type int. More...
     
    subroutine piodarray::write_darray_6d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 6D array of type int. More...
     
    subroutine piodarray::write_darray_7d_int (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 7D array of type int. More...
     
    subroutine piodarray::write_darray_2d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 2D array of type double. More...
     
    subroutine piodarray::write_darray_3d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 3D array of type double. More...
     
    subroutine piodarray::write_darray_4d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 4D array of type double. More...
     
    subroutine piodarray::write_darray_5d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 5D array of type double. More...
     
    subroutine piodarray::write_darray_6d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 6D array of type double. More...
     
    subroutine piodarray::write_darray_7d_double (File, varDesc, ioDesc, array, iostat, fillval)
     Writes a 7D array of type double. More...
     
    subroutine piodarray::read_darray_1d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 1 dimension(s). More...
     
    subroutine piodarray::read_darray_2d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 2 dimension(s). More...
     
    subroutine piodarray::read_darray_3d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 3 dimension(s). More...
     
    subroutine piodarray::read_darray_4d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 4 dimension(s). More...
     
    subroutine piodarray::read_darray_5d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 5 dimension(s). More...
     
    subroutine piodarray::read_darray_6d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 6 dimension(s). More...
     
    subroutine piodarray::read_darray_7d_real (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type real from a netCDF variable of 7 dimension(s). More...
     
    subroutine piodarray::read_darray_1d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 1 dimension(s). More...
     
    subroutine piodarray::read_darray_2d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 2 dimension(s). More...
     
    subroutine piodarray::read_darray_3d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 3 dimension(s). More...
     
    subroutine piodarray::read_darray_4d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 4 dimension(s). More...
     
    subroutine piodarray::read_darray_5d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 5 dimension(s). More...
     
    subroutine piodarray::read_darray_6d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 6 dimension(s). More...
     
    subroutine piodarray::read_darray_7d_int (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type int from a netCDF variable of 7 dimension(s). More...
     
    subroutine piodarray::read_darray_1d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 1 dimension(s). More...
     
    subroutine piodarray::read_darray_2d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 2 dimension(s). More...
     
    subroutine piodarray::read_darray_3d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 3 dimension(s). More...
     
    subroutine piodarray::read_darray_4d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 4 dimension(s). More...
     
    subroutine piodarray::read_darray_5d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 5 dimension(s). More...
     
    subroutine piodarray::read_darray_6d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 6 dimension(s). More...
     
    subroutine piodarray::read_darray_7d_double (File, varDesc, ioDesc, array, iostat)
     Read distributed array of type double from a netCDF variable of 7 dimension(s). More...
     
    -subroutine piodarray::read_darray_internal_real (ncid, varid, ioid, alen, array, iostat)
     
    -subroutine piodarray::read_darray_internal_int (ncid, varid, ioid, alen, array, iostat)
     
    -subroutine piodarray::read_darray_internal_double (ncid, varid, ioid, alen, array, iostat)
     
    -

    Detailed Description

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    Read and write routines for decomposed data.

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    - - diff --git a/docs/piolib__mod_8_f90.html b/docs/piolib__mod_8_f90.html deleted file mode 100644 index 6eeae09b323..00000000000 --- a/docs/piolib__mod_8_f90.html +++ /dev/null @@ -1,359 +0,0 @@ - - - - - - - -PIO: piolib_mod.F90 File Reference - - - - - - - - - - -
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    -#define __PIO_FILE__   "piolib_mod.f90"
     
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    logical function, public piolib_mod::pio_file_is_open (File)
     This logical function indicates if a file is open. More...
     
    integer function, public piolib_mod::pio_get_local_array_size (iodesc)
     This function returns the expected local size of an array associated with iodesc. More...
     
    subroutine piolib_mod::advanceframe (file, vardesc)
     advances the record dimension of a variable in a netcdf format file or the block address in a binary file More...
     
    subroutine piolib_mod::setframe (file, vardesc, frame)
     sets the record dimension of a variable in a netcdf format file or the block address in a binary file More...
     
    subroutine piolib_mod::setdebuglevel (level)
     sets the level of debug information output to stdout by pio More...
     
    subroutine piolib_mod::seterrorhandlingfile (file, method, oldmethod)
     set the pio error handling method for a file More...
     
    subroutine piolib_mod::seterrorhandlingiosystem (iosystem, method, oldmethod)
     set the pio error handling method for a pio system More...
     
    subroutine piolib_mod::seterrorhandlingiosysid (iosysid, method, oldmethod)
     set the pio error handling method for a pio system or globally More...
     
    subroutine piolib_mod::pio_initdecomp_bc (iosystem, basepiotype, dims, compstart, compcount, iodesc)
     Implements the decomp_bc for PIO_initdecomp. More...
     
    subroutine piolib_mod::initdecomp_2dof_bin_i4 (iosystem, basepiotype, dims, lenblocks, compdof, iodofr, iodofw, iodesc)
     A deprecated interface to the PIO_initdecomp method. More...
     
    subroutine piolib_mod::initdecomp_1dof_bin_i8 (iosystem, basepiotype, dims, lenblocks, compdof, iodofr, iodesc)
     A deprecated interface to the PIO_initdecomp method. More...
     
    subroutine piolib_mod::initdecomp_2dof_nf_i4 (iosystem, basepiotype, dims, lenblocks, compdof, iodofr, iodofw, start, count, iodesc)
     A deprecated interface to the PIO_initdecomp method. More...
     
    subroutine piolib_mod::initdecomp_1dof_nf_i4 (iosystem, basepiotype, dims, lenblocks, compdof, iodof, start, count, iodesc)
     A deprecated interface to the PIO_initdecomp method. More...
     
    subroutine piolib_mod::pio_initdecomp_dof_i4 (iosystem, basepiotype, dims, compdof, iodesc, rearr, iostart, iocount)
     Implements the decomp_dof for PIO_initdecomp (previous name: initdecomp_1dof_nf_box) More...
     
    -subroutine piolib_mod::pio_initdecomp_dof_i8 (iosystem, basepiotype, dims, compdof, iodesc, rearr, iostart, iocount)
     
    subroutine piolib_mod::init_intracom (comp_rank, comp_comm, num_iotasks, num_aggregator, stride, rearr, iosystem, base, rearr_opts)
     initialize the pio subsystem. More...
     
    subroutine piolib_mod::init_intercom (component_count, peer_comm, comp_comms, io_comm, iosystem)
     Initialize the pio subsystem. More...
     
    -subroutine, public piolib_mod::pio_set_hint (iosystem, hint, hintval)
     
    subroutine piolib_mod::finalize (iosystem, ierr)
     finalizes the pio subsystem. More...
     
    subroutine piolib_mod::getnumiotasks (iosystem, numiotasks)
     This returns the number of IO-tasks that PIO is using. More...
     
    -logical function, public piolib_mod::pio_iotype_available (iotype)
     
    integer function piolib_mod::createfile (iosystem, file, iotype, fname, amode_in)
     Create a NetCDF or PNetCDF file using PIO. More...
     
    integer function, public piolib_mod::pio_openfile (iosystem, file, iotype, fname, mode)
     open an existing file using pio More...
     
    subroutine piolib_mod::syncfile (file)
     synchronizing a file forces all writes to complete before the subroutine returns. More...
     
    subroutine piolib_mod::freedecomp_ios (ios, iodesc)
     free all allocated storage associated with this decomposition More...
     
    subroutine piolib_mod::freedecomp_file (file, iodesc)
     free all allocated storage associated with this decomposition More...
     
    subroutine piolib_mod::closefile (file)
     close a disk file More...
     
    -subroutine piolib_mod::read_ascii (rank, iobuf, size)
     
    subroutine, public piolib_mod::pio_deletefile (ios, fname)
     Delete a file. More...
     
    integer function, public piolib_mod::pio_set_rearr_opts (ios, comm_type, fcd, enable_hs_c2i, enable_isend_c2i, max_pend_req_c2i, enable_hs_i2c, enable_isend_i2c, max_pend_req_i2c)
     Set the rerranger options. More...
     
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    Initialization Routines for PIO.

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    Function/Subroutine Documentation

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    ◆ pio_deletefile()

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    integer, intent(in) comm_type,
    integer, intent(in) fcd,
    logical, intent(in) enable_hs_c2i,
    logical, intent(in) enable_isend_c2i,
    integer, intent(in) max_pend_req_c2i,
    logical, intent(in) enable_hs_i2c,
    logical, intent(in) enable_isend_i2c,
    integer, intent(in) max_pend_req_i2c 
    )
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    Set the rerranger options.

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    ios: handle to pio iosystem
    comm_type: The two choices for rearranger communication.
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    • PIO_rearr_comm_p2p : Point to point
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    • PIO_rearr_comm_fc_2d_enable : COMM procs to IO procs and vice versa
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    enable_hs_c2i: Enable handshake (compute procs to io procs)
    enable_isend_c2i: Enable isends (compute procs to io procs)
    max_pend_req_c2iMaximum pending requests (compute procs to io procs)
    enable_hs_i2c: Enable handshake (io procs to compute procs)
    enable_isend_i2c: Enable isends (io procs to compute procs)
    max_pend_req_i2cMaximum pending requests (io procs to compute procs) Type that defines the PIO rearranger options.
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    interface  pionfatt_mod::PIOc_put_att_text
     Write a netCDF text attribute. More...
     
    interface  pionfatt_mod::PIOc_get_att_text
     
    interface  pionfatt_mod::PIOc_put_att_int
     
    interface  pionfatt_mod::PIOc_put_att_float
     
    interface  pionfatt_mod::PIOc_put_att_double
     
    interface  pionfatt_mod::PIOc_get_att_int
     
    interface  pionfatt_mod::PIOc_get_att_float
     
    interface  pionfatt_mod::PIOc_get_att_double
     
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    -#define __PIO_FILE__   "pionfatt_mod.F90"
     
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    integer function pionfatt_mod::put_att_desc_text (File, vdesc, name, values)
     Writes an netcdf attribute to a file. More...
     
    -integer function pionfatt_mod::put_att_desc_real (File, vdesc, name, values)
     
    -integer function pionfatt_mod::put_att_desc_double (File, vdesc, name, values)
     
    -integer function pionfatt_mod::put_att_desc_int (File, vdesc, name, values)
     
    -integer function pionfatt_mod::put_att_vid_text (File, varid, name, value)
     
    -integer function pionfatt_mod::put_att_vid_real (File, varid, name, value)
     
    -integer function pionfatt_mod::put_att_vid_double (File, varid, name, value)
     
    -integer function pionfatt_mod::put_att_vid_int (File, varid, name, value)
     
    -integer function pionfatt_mod::put_att_id_int (ncid, varid, name, values)
     
    -integer function pionfatt_mod::put_att_id_real (ncid, varid, name, values)
     
    -integer function pionfatt_mod::put_att_id_double (ncid, varid, name, values)
     
    -integer function pionfatt_mod::put_att_id_text (ncid, varid, name, values)
     
    -integer function pionfatt_mod::put_att_1d_id_text (ncid, varid, name, value)
     
    -integer function pionfatt_mod::put_att_1d_id_text_internal (ncid, varid, name, arrlen, values)
     
    -integer function pionfatt_mod::get_att_id_text (ncid, varid, name, values)
     
    integer function pionfatt_mod::put_att_1d_id_real (ncid, varid, name, values)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfatt_mod::put_att_1d_id_double (ncid, varid, name, values)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfatt_mod::put_att_1d_id_int (ncid, varid, name, values)
     Writes an netcdf attribute to a file. More...
     
    -integer function pionfatt_mod::put_att_1d_id_internal_real (ncid, varid, name, len, values)
     
    -integer function pionfatt_mod::put_att_1d_id_internal_double (ncid, varid, name, len, values)
     
    -integer function pionfatt_mod::put_att_1d_id_internal_int (ncid, varid, name, len, values)
     
    integer function pionfatt_mod::put_att_1d_desc_real (File, varDesc, name, values)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfatt_mod::put_att_1d_desc_int (File, varDesc, name, values)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfatt_mod::put_att_1d_desc_double (File, varDesc, name, values)
     Writes an netcdf attribute to a file. More...
     
    -integer function pionfatt_mod::put_att_1d_vid_text (File, varid, name, value)
     
    -integer function pionfatt_mod::put_att_1d_vid_real (File, varid, name, value)
     
    -integer function pionfatt_mod::put_att_1d_vid_double (File, varid, name, value)
     
    -integer function pionfatt_mod::put_att_1d_vid_int (File, varid, name, value)
     
    integer function pionfatt_mod::get_att_desc_text (File, varDesc, name, values)
     Reads an netcdf attribute from a file. More...
     
    -integer function pionfatt_mod::get_att_desc_real (File, varDesc, name, values)
     
    -integer function pionfatt_mod::get_att_desc_double (File, varDesc, name, values)
     
    -integer function pionfatt_mod::get_att_desc_int (File, varDesc, name, values)
     
    integer function pionfatt_mod::get_att_desc_1d_int (File, varDesc, name, values)
     Reads an netcdf attribute from a file. More...
     
    -integer function pionfatt_mod::get_att_desc_1d_real (File, varDesc, name, values)
     
    -integer function pionfatt_mod::get_att_desc_1d_double (File, varDesc, name, values)
     
    integer function pionfatt_mod::get_att_id_int (ncid, varid, name, values)
     Reads an netcdf attribute from a file. More...
     
    -integer function pionfatt_mod::get_att_id_real (ncid, varid, name, values)
     
    -integer function pionfatt_mod::get_att_id_double (ncid, varid, name, values)
     
    -integer function pionfatt_mod::get_att_text (File, varid, name, values)
     
    -integer function pionfatt_mod::get_att_real (File, varid, name, values)
     
    -integer function pionfatt_mod::get_att_double (File, varid, name, values)
     
    -integer function pionfatt_mod::get_att_int (File, varid, name, values)
     
    integer function pionfatt_mod::get_att_1d_real (File, varid, name, values)
     Reads an netcdf attribute from a file. More...
     
    integer function pionfatt_mod::get_att_1d_int (File, varid, name, values)
     Reads an netcdf attribute from a file. More...
     
    integer function pionfatt_mod::get_att_1d_double (File, varid, name, values)
     Reads an netcdf attribute from a file. More...
     
    -integer function pionfatt_mod::get_att_1d_id_real (ncid, varid, name, values)
     
    -integer function pionfatt_mod::get_att_1d_id_int (ncid, varid, name, values)
     
    -integer function pionfatt_mod::get_att_1d_id_double (ncid, varid, name, values)
     
    -

    Detailed Description

    -

    NetCDF attribute interface to PIO.

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    interface  pionfget_mod::PIOc_get_var_int
     
    interface  pionfget_mod::PIOc_get_var_float
     
    interface  pionfget_mod::PIOc_get_var_double
     
    interface  pionfget_mod::PIOc_get_vara_int
     
    interface  pionfget_mod::PIOc_get_vara_float
     
    interface  pionfget_mod::PIOc_get_vara_double
     
    interface  pionfget_mod::PIOc_get_vara_text
     
    - - - -

    -Macros

    -#define __PIO_FILE__   "pionfget_mod.F90"
     
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    -Functions/Subroutines

    integer function pionfget_mod::get_var1_text (File, varid, index, ival)
     Reads non-decomposed fields from a NetCDF file. More...
     
    -integer function pionfget_mod::get_var1_id_real (ncid, varid, index, ival)
     
    -integer function pionfget_mod::get_var1_id_double (ncid, varid, index, ival)
     
    -integer function pionfget_mod::get_var1_id_text_internal (ncid, varid, index, vlen, ival)
     
    integer function pionfget_mod::get_var1_vdesc_text (File, vardesc, index, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_1d_int (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_2d_int (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_3d_int (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_4d_int (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_5d_int (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_1d_real (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_2d_real (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_3d_real (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_4d_real (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_5d_real (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_1d_double (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_2d_double (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_3d_double (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_4d_double (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_5d_double (File, varid, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_1d_text (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_2d_text (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_3d_text (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_4d_text (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_5d_text (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_1d_real (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_2d_real (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_3d_real (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_4d_real (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_5d_real (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_1d_double (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_2d_double (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_3d_double (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_4d_double (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_5d_double (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_1d_int (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_2d_int (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_3d_int (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_4d_int (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_vara_vdesc_5d_int (File, vardesc, start, count, ival)
     Writes an netcdf attribute to a file. More...
     
    integer function pionfget_mod::get_var_0d_text (File, varid, ival)
     Writes an netcdf attribute to a file. More...
     
    -integer function pionfget_mod::get_var_0d_real (File, varid, ival)
     
    -integer function pionfget_mod::get_var_0d_double (File, varid, ival)
     
    -integer function pionfget_mod::get_var_1d_text (File, varid, ival)
     
    -integer function pionfget_mod::get_vara_real_internal (ncid, varid, start, count, ival)
     
    -integer function pionfget_mod::get_vara_double_internal (ncid, varid, start, count, ival)
     
    -integer function pionfget_mod::get_vara_text_internal (ncid, varid, start, count, nstrs, ival)
     
    -integer function pionfget_mod::get_var_1d_int (File, varid, ival)
     
    integer function pionfget_mod::get_var_vdesc_0d_text (File, vardesc, ival)
     Writes an netcdf attribute to a file. More...
     
    -

    Detailed Description

    -

    Read Routines for non-decomposed NetCDF data.

    -
    - -
    -Generated on Sun May 19 2019 07:57:01 for PIO by   -doxygen - 1.8.13 -
    - - diff --git a/docs/pionfput__mod_8_f90.html b/docs/pionfput__mod_8_f90.html deleted file mode 100644 index cde621d903e..00000000000 --- a/docs/pionfput__mod_8_f90.html +++ /dev/null @@ -1,397 +0,0 @@ - - - - - - - -PIO: pionfput_mod.F90 File Reference - - - - - - - - - - -
    -
    - - - - - - -
    -
    PIO -  2.4.2 -
    -
    -
    - - - - - - - - -
    -
    - - -
    - -
    - - -
    -
    -
    -Data Types | -Macros | -Functions/Subroutines
    -
    -
    pionfput_mod.F90 File Reference
    -
    -
    - -

    Write routines for non-decomposed NetCDF data. -More...

    - - - - - - - - - - -

    -Data Types

    interface  pionfput_mod::PIOc_put_vara_text
     
    interface  pionfput_mod::PIOc_put_vara_int
     
    interface  pionfput_mod::PIOc_put_vara_float
     
    interface  pionfput_mod::PIOc_put_vara_double
     
    - - - -

    -Macros

    -#define __PIO_FILE__   "pionfput_mod.F90"
     
    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

    -Functions/Subroutines

    integer function pionfput_mod::put_var1_text (File, varid, index, ival)
     Write one element of data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var1_int (File, varid, index, ival)
     Write one element of data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var1_real (File, varid, index, ival)
     Write one element of data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var1_double (File, varid, index, ival)
     Write one element of data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var1_vdesc_text (File, vardesc, index, ival)
     Write one element of data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var_0d_text (File, varid, ival)
     Writes a netCDF scalar variable. More...
     
    integer function pionfput_mod::put_var_1d_text (File, varid, ival)
     Writes text data to netcdf variable. More...
     
    integer function pionfput_mod::put_var_2d_text (File, varid, ival)
     Writes text data to netcdf variable. More...
     
    integer function pionfput_mod::put_var_3d_text (File, varid, ival)
     Writes text data to netcdf variable. More...
     
    integer function pionfput_mod::put_var_4d_text (File, varid, ival)
     Writes text data to netcdf variable. More...
     
    integer function pionfput_mod::put_var_5d_text (File, varid, ival)
     Writes text data to netcdf variable. More...
     
    integer function pionfput_mod::put_var_internal_int (ncid, varid, ival)
     Writes int data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var_internal_real (ncid, varid, ival)
     Writes real data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var_internal_double (ncid, varid, ival)
     Writes double data to a netCDF variable. More...
     
    integer function pionfput_mod::put_var_1d_int (File, varid, ival)
     Write int data to a netCDF varaible of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_2d_int (File, varid, ival)
     Write int data to a netCDF varaible of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_3d_int (File, varid, ival)
     Write int data to a netCDF varaible of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_4d_int (File, varid, ival)
     Write int data to a netCDF varaible of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_5d_int (File, varid, ival)
     Write int data to a netCDF varaible of 5 dimension(s). More...
     
    integer function pionfput_mod::put_var_1d_real (File, varid, ival)
     Write real data to a netCDF varaible of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_2d_real (File, varid, ival)
     Write real data to a netCDF varaible of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_3d_real (File, varid, ival)
     Write real data to a netCDF varaible of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_4d_real (File, varid, ival)
     Write real data to a netCDF varaible of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_5d_real (File, varid, ival)
     Write real data to a netCDF varaible of 5 dimension(s). More...
     
    integer function pionfput_mod::put_var_1d_double (File, varid, ival)
     Write double data to a netCDF varaible of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_2d_double (File, varid, ival)
     Write double data to a netCDF varaible of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_3d_double (File, varid, ival)
     Write double data to a netCDF varaible of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_4d_double (File, varid, ival)
     Write double data to a netCDF varaible of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_5d_double (File, varid, ival)
     Write double data to a netCDF varaible of 5 dimension(s). More...
     
    integer function pionfput_mod::put_var_0d_int (File, varid, ival)
     Writes int data to a netCDF scalar variable. More...
     
    integer function pionfput_mod::put_var_0d_real (File, varid, ival)
     Writes real data to a netCDF scalar variable. More...
     
    integer function pionfput_mod::put_var_0d_double (File, varid, ival)
     Writes double data to a netCDF scalar variable. More...
     
    integer function pionfput_mod::put_var_vdesc_0d_text (File, vardesc, ival)
     Write text data to a netcdf variable of 0 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_1d_text (File, vardesc, ival)
     Write text data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_2d_text (File, vardesc, ival)
     Write text data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_3d_text (File, vardesc, ival)
     Write text data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_4d_text (File, vardesc, ival)
     Write text data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_5d_text (File, vardesc, ival)
     Write text data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_0d_real (File, vardesc, ival)
     Write real data to a netcdf variable of 0 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_1d_real (File, vardesc, ival)
     Write real data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_2d_real (File, vardesc, ival)
     Write real data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_3d_real (File, vardesc, ival)
     Write real data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_4d_real (File, vardesc, ival)
     Write real data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_5d_real (File, vardesc, ival)
     Write real data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_0d_double (File, vardesc, ival)
     Write double data to a netcdf variable of 0 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_1d_double (File, vardesc, ival)
     Write double data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_2d_double (File, vardesc, ival)
     Write double data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_3d_double (File, vardesc, ival)
     Write double data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_4d_double (File, vardesc, ival)
     Write double data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_5d_double (File, vardesc, ival)
     Write double data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_0d_int (File, vardesc, ival)
     Write int data to a netcdf variable of 0 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_1d_int (File, vardesc, ival)
     Write int data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_2d_int (File, vardesc, ival)
     Write int data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_3d_int (File, vardesc, ival)
     Write int data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_4d_int (File, vardesc, ival)
     Write int data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_var_vdesc_5d_int (File, vardesc, ival)
     Write int data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_1d_text (File, varid, start, count, ival)
     Write text data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_2d_text (File, varid, start, count, ival)
     Write text data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_3d_text (File, varid, start, count, ival)
     Write text data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_4d_text (File, varid, start, count, ival)
     Write text data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_5d_text (File, varid, start, count, ival)
     Write text data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_1d_int (File, varid, start, count, ival)
     Write int data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_2d_int (File, varid, start, count, ival)
     Write int data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_3d_int (File, varid, start, count, ival)
     Write int data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_4d_int (File, varid, start, count, ival)
     Write int data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_5d_int (File, varid, start, count, ival)
     Write int data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_1d_real (File, varid, start, count, ival)
     Write real data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_2d_real (File, varid, start, count, ival)
     Write real data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_3d_real (File, varid, start, count, ival)
     Write real data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_4d_real (File, varid, start, count, ival)
     Write real data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_5d_real (File, varid, start, count, ival)
     Write real data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_1d_double (File, varid, start, count, ival)
     Write double data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_2d_double (File, varid, start, count, ival)
     Write double data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_3d_double (File, varid, start, count, ival)
     Write double data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_4d_double (File, varid, start, count, ival)
     Write double data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_5d_double (File, varid, start, count, ival)
     Write double data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_1d_text (File, vardesc, start, count, ival)
     Write text data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_2d_text (File, vardesc, start, count, ival)
     Write text data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_3d_text (File, vardesc, start, count, ival)
     Write text data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_4d_text (File, vardesc, start, count, ival)
     Write text data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_5d_text (File, vardesc, start, count, ival)
     Write text data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_1d_real (File, vardesc, start, count, ival)
     Write real data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_2d_real (File, vardesc, start, count, ival)
     Write real data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_3d_real (File, vardesc, start, count, ival)
     Write real data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_4d_real (File, vardesc, start, count, ival)
     Write real data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_5d_real (File, vardesc, start, count, ival)
     Write real data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_1d_double (File, vardesc, start, count, ival)
     Write double data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_2d_double (File, vardesc, start, count, ival)
     Write double data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_3d_double (File, vardesc, start, count, ival)
     Write double data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_4d_double (File, vardesc, start, count, ival)
     Write double data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_5d_double (File, vardesc, start, count, ival)
     Write double data to a netcdf variable of 5 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_1d_int (File, vardesc, start, count, ival)
     Write int data to a netcdf variable of 1 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_2d_int (File, vardesc, start, count, ival)
     Write int data to a netcdf variable of 2 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_3d_int (File, vardesc, start, count, ival)
     Write int data to a netcdf variable of 3 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_4d_int (File, vardesc, start, count, ival)
     Write int data to a netcdf variable of 4 dimension(s). More...
     
    integer function pionfput_mod::put_vara_vdesc_5d_int (File, vardesc, start, count, ival)
     Write int data to a netcdf variable of 5 dimension(s). More...
     
    -

    Detailed Description

    -

    Write routines for non-decomposed NetCDF data.

    -
    - -
    -Generated on Sun May 19 2019 07:57:01 for PIO by   -doxygen - 1.8.13 -
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- position:absolute; - width:20px; - height:19px; -} - -.left #MSearchSelect { - left:4px; -} - -.right #MSearchSelect { - right:5px; -} - -#MSearchField { - display:block; - position:absolute; - height:19px; - background:url('search_m.png') repeat-x; - border:none; - width:115px; - margin-left:20px; - padding-left:4px; - color: #909090; - outline: none; - font: 9pt Arial, Verdana, sans-serif; - -webkit-border-radius: 0px; -} - -#FSearchBox #MSearchField { - margin-left:15px; -} - -#MSearchBox .right { - display:block; - position:absolute; - right:10px; - top:8px; - width:20px; - height:19px; - background:url('search_r.png') no-repeat; - background-position:left; -} - -#MSearchClose { - display: none; - position: absolute; - top: 4px; - background : none; - border: none; - margin: 0px 4px 0px 0px; - padding: 0px 0px; - outline: none; -} - -.left #MSearchClose { - left: 6px; -} - -.right #MSearchClose { - right: 2px; -} - -.MSearchBoxActive #MSearchField { - color: #000000; -} - -/*---------------- Search filter selection */ - -#MSearchSelectWindow { - display: none; 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- text-decoration: none; - cursor: pointer; - display: block; -} - -/*---------------- Search results window */ - -iframe#MSearchResults { - width: 60ex; - height: 15em; -} - -#MSearchResultsWindow { - display: none; - position: absolute; - left: 0; top: 0; - border: 1px solid #000; - background-color: #EEF1F7; - z-index:10000; -} - -/* ----------------------------------- */ - - -#SRIndex { - clear:both; - padding-bottom: 15px; -} - -.SREntry { - font-size: 10pt; - padding-left: 1ex; -} - -.SRPage .SREntry { - font-size: 8pt; - padding: 1px 5px; -} - -body.SRPage { - margin: 5px 2px; -} - -.SRChildren { - padding-left: 3ex; padding-bottom: .5em -} - -.SRPage .SRChildren { - display: none; -} - -.SRSymbol { - font-weight: bold; - color: #425E97; - font-family: Arial, Verdana, sans-serif; - text-decoration: none; - outline: none; -} - -a.SRScope { - display: block; - color: #425E97; - font-family: Arial, Verdana, sans-serif; - text-decoration: none; - outline: none; -} - -a.SRSymbol:focus, a.SRSymbol:active, -a.SRScope:focus, a.SRScope:active { - text-decoration: underline; 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// for IE - if (e.keyCode==40 && this.searchIndex0) // Up - { - this.searchIndex--; - this.OnSelectItem(this.searchIndex); - } - else if (e.keyCode==13 || e.keyCode==27) - { - this.OnSelectItem(this.searchIndex); - this.CloseSelectionWindow(); - this.DOMSearchField().focus(); - } - return false; - } - - // --------- Actions - - // Closes the results window. - this.CloseResultsWindow = function() - { - this.DOMPopupSearchResultsWindow().style.display = 'none'; - this.DOMSearchClose().style.display = 'none'; - this.Activate(false); - } - - this.CloseSelectionWindow = function() - { - this.DOMSearchSelectWindow().style.display = 'none'; - } - - // Performs a search. - this.Search = function() - { - this.keyTimeout = 0; - - // strip leading whitespace - var searchValue = this.DOMSearchField().value.replace(/^ +/, ""); - - var code = searchValue.toLowerCase().charCodeAt(0); - var idxChar = searchValue.substr(0, 1).toLowerCase(); - if ( 0xD800 <= code && code <= 0xDBFF && searchValue > 1) // surrogate pair - { - idxChar = searchValue.substr(0, 2); - } - - var resultsPage; - var resultsPageWithSearch; - var hasResultsPage; - - var idx = indexSectionsWithContent[this.searchIndex].indexOf(idxChar); - if (idx!=-1) - { - var hexCode=idx.toString(16); - resultsPage = this.resultsPath + '/' + indexSectionNames[this.searchIndex] + '_' + hexCode + '.html'; - resultsPageWithSearch = resultsPage+'?'+escape(searchValue); - hasResultsPage = true; - } - else // nothing available for this search term - { - resultsPage = this.resultsPath + '/nomatches.html'; - resultsPageWithSearch = resultsPage; - hasResultsPage = false; - } - - window.frames.MSearchResults.location = resultsPageWithSearch; - var domPopupSearchResultsWindow = this.DOMPopupSearchResultsWindow(); - - if (domPopupSearchResultsWindow.style.display!='block') - { - var domSearchBox = this.DOMSearchBox(); - this.DOMSearchClose().style.display = 'inline'; - if (this.insideFrame) - { - var domPopupSearchResults = this.DOMPopupSearchResults(); - domPopupSearchResultsWindow.style.position = 'relative'; - domPopupSearchResultsWindow.style.display = 'block'; - var width = document.body.clientWidth - 8; // the -8 is for IE :-( - domPopupSearchResultsWindow.style.width = width + 'px'; - domPopupSearchResults.style.width = width + 'px'; - } - else - { - var domPopupSearchResults = this.DOMPopupSearchResults(); - var left = getXPos(domSearchBox) + 150; // domSearchBox.offsetWidth; - var top = getYPos(domSearchBox) + 20; // domSearchBox.offsetHeight + 1; - domPopupSearchResultsWindow.style.display = 'block'; - left -= domPopupSearchResults.offsetWidth; - domPopupSearchResultsWindow.style.top = top + 'px'; - domPopupSearchResultsWindow.style.left = left + 'px'; - } - } - - this.lastSearchValue = searchValue; - this.lastResultsPage = resultsPage; - } - - // -------- Activation Functions - - // Activates or deactivates the search panel, resetting things to - // their default values if necessary. - this.Activate = function(isActive) - { - if (isActive || // open it - this.DOMPopupSearchResultsWindow().style.display == 'block' - ) - { - this.DOMSearchBox().className = 'MSearchBoxActive'; - - var searchField = this.DOMSearchField(); - - if (searchField.value == this.searchLabel) // clear "Search" term upon entry - { - searchField.value = ''; - this.searchActive = true; - } - } - else if (!isActive) // directly remove the panel - { - this.DOMSearchBox().className = 'MSearchBoxInactive'; - this.DOMSearchField().value = this.searchLabel; - this.searchActive = false; - this.lastSearchValue = '' - this.lastResultsPage = ''; - } - } -} - -// ----------------------------------------------------------------------- - -// The class that handles everything on the search results page. -function SearchResults(name) -{ - // The number of matches from the last run of . - this.lastMatchCount = 0; - this.lastKey = 0; - this.repeatOn = false; - - // Toggles the visibility of the passed element ID. - this.FindChildElement = function(id) - { - var parentElement = document.getElementById(id); - var element = parentElement.firstChild; - - while (element && element!=parentElement) - { - if (element.nodeName == 'DIV' && element.className == 'SRChildren') - { - return element; 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evt : window.event; // for IE - if (e.keyCode==13) return true; - if (!this.ProcessKeys(e)) return false; - - if (this.lastKey==38) // Up - { - var newIndex = itemIndex-1; - var focusItem = this.NavPrev(newIndex); - if (focusItem) - { - var child = this.FindChildElement(focusItem.parentNode.parentNode.id); - if (child && child.style.display == 'block') // children visible - { - var n=0; - var tmpElem; - while (1) // search for last child - { - tmpElem = document.getElementById('Item'+newIndex+'_c'+n); - if (tmpElem) - { - focusItem = tmpElem; - } - else // found it! - { - break; - } - n++; - } - } - } - if (focusItem) - { - focusItem.focus(); - } - else // return focus to search field - { - parent.document.getElementById("MSearchField").focus(); - } - } - else if (this.lastKey==40) // Down - { - var newIndex = itemIndex+1; - var focusItem; - var item = document.getElementById('Item'+itemIndex); - var elem = this.FindChildElement(item.parentNode.parentNode.id); - if (elem && elem.style.display == 'block') // children visible - { - focusItem = document.getElementById('Item'+itemIndex+'_c0'); - } - if (!focusItem) focusItem = this.NavNext(newIndex); - if (focusItem) focusItem.focus(); - } - else if (this.lastKey==39) // Right - { - var item = document.getElementById('Item'+itemIndex); - var elem = this.FindChildElement(item.parentNode.parentNode.id); - if (elem) elem.style.display = 'block'; - } - else if (this.lastKey==37) // Left - { - var item = document.getElementById('Item'+itemIndex); - var elem = this.FindChildElement(item.parentNode.parentNode.id); - if (elem) elem.style.display = 'none'; - } - else if (this.lastKey==27) // Escape - { - parent.searchBox.CloseResultsWindow(); - parent.document.getElementById("MSearchField").focus(); - } - else if (this.lastKey==13) // Enter - { - return true; - } - return false; - } - - this.NavChild = function(evt,itemIndex,childIndex) - { - var e = (evt) ? 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    A defined PIO system descriptor created by PIO_init (see pio_types)

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     Maximum pending requests.
     
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    -type(pio_rearr_comm_fc_opt_t) comm_fc_opts_comp2io
     comp2io
     
    -type(pio_rearr_comm_fc_opt_t) comm_fc_opts_io2comp
     io2comp
     
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    -integer(i4) varid
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    -integer(i4) ncid
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    A variable descriptor returned from PIO_def_var (see pio_types)

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    procedure, public init
     Initialize MPI, ParallelIO, and example data. More...
     
    procedure, public createdecomp
     Create the decomposition for the example. More...
     
    procedure, public createfile
     Create netCDF output file. More...
     
    procedure, public definevar
     Define the netCDF metadata. More...
     
    procedure, public writevar
     Write the sample data to the output file. More...
     
    procedure, public readvar
     Read the sample data from the output file. More...
     
    procedure, public closefile
     Close the netCDF output file. More...
     
    procedure, public cleanup
     Clean up resources. More...
     
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    integer myrank
     Rank of processor running the code. More...
     
    integer ntasks
     Number of processors participating in MPI communicator. More...
     
    integer niotasks
     Number of processors performing I/O. More...
     
    integer stride
     Stride in the mpi rank between io tasks. More...
     
    integer numaggregator
     Number of aggregator. More...
     
    integer optbase
     Start index of I/O processors. More...
     
    type(iosystem_desc_t) pioiosystem
     The ParallelIO system set up by PIO_init. More...
     
    type(file_desc_t) piofiledesc
     Contains data identifying the file. More...
     
    type(var_desc_t) piovar
     The netCDF variable ID. More...
     
    type(io_desc_t) iodescncells
     An io descriptor handle that is generated in PIO_initdecomp. More...
     
    integer iotype
     Specifies the flavor of netCDF output. More...
     
    integer piodimid
     The netCDF dimension ID. More...
     
    integer ista
     1-based index of start of this processors data in full data array. More...
     
    integer isto
     Size of data array for this processor. More...
     
    integer arridxperpe
     Number of elements handled by each processor. More...
     
    integer, dimension(1) dimlen
     The length of the dimension of the netCDF variable. More...
     
    integer, dimension(:), allocatable databuffer
     Buffer to hold sample data that is written to netCDF file. More...
     
    integer, dimension(:), allocatable readbuffer
     Buffer to read data into. More...
     
    integer, dimension(:), allocatable compdof
     Array describing the decomposition of the data. More...
     
    character(len=255) filename
     Name of the sample netCDF file written by this example. More...
     
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    Detailed Description

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    A class to hold example code and data.

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    This class contains the data and functions to execute the example.

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    Member Function/Subroutine Documentation

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    ◆ cleanup()

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    Clean up resources.

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    ◆ createdecomp()

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    procedure, public pioexample::pioexampleclass::createdecomp ()
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    Create the decomposition for the example.

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    This subroutine creates the decomposition for the example.

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    ◆ createfile()

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    procedure, public pioexample::pioexampleclass::createfile ()
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    Create netCDF output file.

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    This subroutine creates the netCDF output file for the example.

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    ◆ definevar()

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    procedure, public pioexample::pioexampleclass::definevar ()
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    Define the netCDF metadata.

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    This subroutine defines the netCDF dimension and variable used in the output file.

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    ◆ init()

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    procedure, public pioexample::pioexampleclass::init ()
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    Initialize MPI, ParallelIO, and example data.

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    Initialize the MPI and ParallelIO libraries. Also allocate memory to write and read the sample data to the netCDF file.

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    ◆ readvar()

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    procedure, public pioexample::pioexampleclass::readvar ()
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    Read the sample data from the output file.

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    This subroutine reads the sample data array from the netCDF output file.

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    ◆ writevar()

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    procedure, public pioexample::pioexampleclass::writevar ()
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    Write the sample data to the output file.

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    This subroutine writes the sample data array to the netCDF output file.

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    Member Data Documentation

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    ◆ arridxperpe

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    integer pioexample::pioexampleclass::arridxperpe
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    Number of elements handled by each processor.

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    ◆ compdof

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    integer, dimension(:), allocatable pioexample::pioexampleclass::compdof
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    Array describing the decomposition of the data.

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    ◆ databuffer

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    integer, dimension(:), allocatable pioexample::pioexampleclass::databuffer
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    Buffer to hold sample data that is written to netCDF file.

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    ◆ dimlen

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    integer, dimension(1) pioexample::pioexampleclass::dimlen
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    The length of the dimension of the netCDF variable.

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    ◆ filename

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    character(len=255) pioexample::pioexampleclass::filename
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    Name of the sample netCDF file written by this example.

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    ◆ iodescncells

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    type(io_desc_t) pioexample::pioexampleclass::iodescncells
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    An io descriptor handle that is generated in PIO_initdecomp.

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    ◆ iotype

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    integer pioexample::pioexampleclass::iotype
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    Specifies the flavor of netCDF output.

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    ◆ ista

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    integer pioexample::pioexampleclass::ista
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    1-based index of start of this processors data in full data array.

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    ◆ isto

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    integer pioexample::pioexampleclass::isto
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    Size of data array for this processor.

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    ◆ myrank

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    integer pioexample::pioexampleclass::myrank
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    Rank of processor running the code.

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    ◆ niotasks

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    integer pioexample::pioexampleclass::niotasks
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    Number of processors performing I/O.

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    ◆ ntasks

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    integer pioexample::pioexampleclass::ntasks
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    Number of processors participating in MPI communicator.

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    ◆ numaggregator

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    integer pioexample::pioexampleclass::numaggregator
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    Number of aggregator.

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    ◆ optbase

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    integer pioexample::pioexampleclass::optbase
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    Start index of I/O processors.

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    ◆ piodimid

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    integer pioexample::pioexampleclass::piodimid
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    The netCDF dimension ID.

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    ◆ piofiledesc

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    type(file_desc_t) pioexample::pioexampleclass::piofiledesc
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    Contains data identifying the file.

    - -
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    ◆ pioiosystem

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    type(iosystem_desc_t) pioexample::pioexampleclass::pioiosystem
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    The ParallelIO system set up by PIO_init.

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    ◆ piovar

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    type(var_desc_t) pioexample::pioexampleclass::piovar
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    The netCDF variable ID.

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    ◆ readbuffer

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    integer, dimension(:), allocatable pioexample::pioexampleclass::readbuffer
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    Buffer to read data into.

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    ◆ stride

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    integer pioexample::pioexampleclass::stride
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    Stride in the mpi rank between io tasks.

    - -
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    The documentation for this type was generated from the following file: -
    - -
    -Generated on Wed May 22 2019 15:09:23 for PIO by   -doxygen - 1.8.13 -
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@@ -1,138 +0,0 @@ - - - - - - - -PIO: Testing - - - - - - - - - - -
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    Testing
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    Building PIO2 Tests

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    To build both the Unit and Performance tests for PIO2, follow the general instructions for building PIO2 in either the Installation page or the Machine Walk-Through page. During the Build step after (or instead of) the make command, type make tests.

    -

    PIO2 Unit Tests

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    The Parallel IO library comes with more than 20 built-in unit tests to verify that the library is installed and working correctly. These tests utilize the CMake and CTest automation framework. Because the Parallel IO library is built for parallel applications, the unit tests should be run in a parallel environment. The simplest way to do this is to submit a PBS job to run the ctest command.

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    For a library built into the example directory /scratch/user/PIO_build/, an example PBS script would be: 

      #!/bin/bash
-
-  #PBS -q normal
-  #PBS -l nodes=1:ppn=4
-  #PBS -N piotests
-  #PBS -e piotests.e$PBS_JOBID
-  #PBS -o piotests.o$PBS_JOBID
-
-  cd /scratch/user/PIO_build
-  ctest
-

    The output from the unit tests will be reported in the piotests.o$JOBID file. This should look something like:

    -
    Test project /scratch/cluster/katec/PIO_build
    Start 1: test_names
    1/24 Test #1: test_names ....................... Passed 0.60 sec
    Start 2: test_nc4
    2/24 Test #2: test_nc4 ......................... Passed 0.53 sec
    Start 3: pio_unit_test
    3/24 Test #3: pio_unit_test .................... Passed 0.45 sec
    Start 4: init_finialize_1_proc
    4/24 Test #4: init_finialize_1_proc ............ Passed 0.54 sec
    Start 5: init_finialize_2_proc
    5/24 Test #5: init_finialize_2_proc ............ Passed 0.53 sec
    Start 6: init_finalize_2_proc_with_args
    6/24 Test #6: init_finalize_2_proc_with_args ... Passed 0.55 sec
    Start 7: pio_file_simple_tests
    7/24 Test #7: pio_file_simple_tests ............ Passed 0.58 sec
    Start 8: pio_file_fail
    8/24 Test #8: pio_file_fail .................... Passed 0.62 sec
    Start 9: ncdf_simple_tests
    9/24 Test #9: ncdf_simple_tests ................ Passed 0.60 sec
    Start 10: ncdf_get_put_1proc
    10/24 Test #10: ncdf_get_put_1proc ............... Passed 0.65 sec
    Start 11: ncdf_get_put_2proc
    11/24 Test #11: ncdf_get_put_2proc ............... Passed 0.63 sec
    Start 12: ncdf_fail
    12/24 Test #12: ncdf_fail ........................ Passed 0.52 sec
    Start 13: pio_decomp_tests_1p
    13/24 Test #13: pio_decomp_tests_1p .............. Passed 1.54 sec
    Start 14: pio_decomp_tests_2p
    14/24 Test #14: pio_decomp_tests_2p .............. Passed 1.99 sec
    Start 15: pio_decomp_tests_3p
    15/24 Test #15: pio_decomp_tests_3p .............. Passed 2.11 sec
    Start 16: pio_decomp_tests_4p_1agg
    16/24 Test #16: pio_decomp_tests_4p_1agg ......... Passed 2.12 sec
    Start 17: pio_decomp_tests_4p_2agg
    17/24 Test #17: pio_decomp_tests_4p_2agg ......... Passed 2.08 sec
    Start 18: pio_decomp_tests_4p_3agg
    18/24 Test #18: pio_decomp_tests_4p_3agg ......... Passed 2.08 sec
    Start 19: pio_decomp_tests_4p_1iop
    19/24 Test #19: pio_decomp_tests_4p_1iop ......... Passed 1.91 sec
    Start 20: pio_decomp_tests_4p_2iop
    20/24 Test #20: pio_decomp_tests_4p_2iop ......... Passed 2.50 sec
    Start 21: pio_decomp_tests_4p_3iop
    21/24 Test #21: pio_decomp_tests_4p_3iop ......... Passed 2.20 sec
    Start 22: pio_decomp_tests_4p_2iop_2str
    22/24 Test #22: pio_decomp_tests_4p_2iop_2str .... Passed 2.16 sec
    Start 23: pio_decomp_tests_4p_2iop_1agg
    23/24 Test #23: pio_decomp_tests_4p_2iop_1agg .... Passed 2.20 sec
    Start 24: pio_decomp_fillval2
    24/24 Test #24: pio_decomp_fillval2 .............. Passed 0.60 sec
    100% tests passed, 0 tests failed out of 24
    Total Test time (real) = 30.80 sec

    Another option would be to launch an interactive session, change into the build directory, and run the ctest command.

    -

    On Yellowstone, the unit tests can run using the execca or execgy commands as: 

      > setenv DAV_CORES 4
-  > execca ctest
-

    PIO2 Performance Test

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    To run the performance tests, you will need to add two files to the tests/performance subdirectory of the PIO build directory. First, you will need a decomp file. You can download one from our google code page here: https://svn-ccsm-piodecomps.cgd.ucar.edu/trunk/ . You can use any of these files, and save them to your home or base work directory. Secondly, you will need to add a namelist file, named "pioperf.nl". Save this file in the directory with your pioperf executable (this is found in the tests/performance subdirectory of the PIO build directory).

    -

    The contents of the namelist file should look like: 

     &pioperf
-
- decompfile = "/u/home/user/piodecomp30tasks01dims06.dat"
-
- pio_typenames = 'pnetcdf'
-
- niotasks = 30
-
- rearrangers = 1
-
- nvars = 2
-
- /
-

    Here, the second line ("decompfile") points to the path for your decomp file (wherever you saved it). For the rest of the lines, each item added to the list adds another test to be run. For instance, to test all of the types of supported IO, your pio_typenames would look like: 

     pio_typenames = 'pnetcdf','netcdf','netcdf4p','netcdf4c'
-

    HDF5 is netcdf4p, and Parallel-Netcdf is pnetcdf.

    -

    To test with different numbers of IO tasks, you could do: 

     niotasks = 30,15,5
-

    (These tasks are the subset of the run tasks that are designated IO tasks)

    -

    To test with both of the rearranger algorithms: 

     rearrangers = 1,2
-

    (Each rearranger is a different algorithm for converting from data in memory to data in a file on disk. The first one, BOX, is the older method from PIO1, the second, SUBSET, is a newer method that seems to be more efficient in large numbers of tasks)

    -

    To test with different numbers of variables: 

     nvars = 8,5,3,2
-

    (The more variables you use, the higher data throughput goes, usually)

    -

    To run, submit a job with 'pioperf' as the executable, and at least as many tasks as you have specified in the decomposition file. On yellowstone, a submit script could look like: 

     #!/bin/tcsh
-
- #BSUB -P P00000000 # project code
- #BSUB -W 00:10 # wall-clock time (hrs:mins)
- #BSUB -n 30 # number of tasks in job
- #BSUB -R "span[ptile=16]" # run 16 MPI tasks per node
- #BSUB -J pio_perftest # job name
- #BSUB -o pio_perftest.%J.out # output file name in which %J is replaced by the job ID
- #BSUB -e pio_perftest.%J.err # error file name in which %J is replaced by the job ID
- #BSUB -q small # queue
-
- #run the executable
- mpirun.lsf /glade/p/work/katec/pio_work/pio_build/tests/performance/pioperf
-

    The result(s) will look like a line in the output file such as:

    RESULT: write BOX 4 30 2 16.9905924688

    You can decode this as:

      -
    1. Read/write describes the io operation performed
      2. -
    2. BOX/SUBSET is the algorithm for the rearranger (as described above)
      3. -
    3. 4 [1-4] is the io library used for the operation. The options here are [1] Parallel-netcdf [2] NetCDF3 [3] NetCDF4-Compressed [4] NetCDF4-Parallel
      4. -
    4. 30 [any number] is the number of io-specific tasks used in the operation. Must be less than the number of MPI tasks used in the test.
      5. -
    5. 2 [any number] is the number of variables read or written during the operation
      6. -
    6. 16.9905924688 [any number] is the Data Rate of the operation in MB/s. This is the important value for determining performance of the system. The higher this numbre is, the better the PIO2 library is performing for the given operation.
      7. -
    -

    Last updated: 05-17-2016

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    testpio: a regression and benchmarking code
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    The testpio directory, included with the release package, tests both the accuracy and performance of reading and writing data using the pio library.

    -

    The testpio directory contains 3 perl scripts that you can use to build and run the testpio.F90 code.

      -
    • -testpio_build.pl - builds the pio, timing and testpio libraries and executables
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    • -testpio_bench.pl - setups, builds and runs a user specified set of test suites using testpio and generates log files with benchmarking information.
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    • -testpio_run.pl - setups, builds and runs a user specified set of test suites using testpio.
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    Additional C shell scripts wrappers are packaged with the testpio suite to allow for environment customization of the 3 perl scripts listed above. The following help information describes in more detail how the testpio code works.

    -

    The tests are controlled via a namelist. Sample namelist files are located in the testpio/namelists directory. It contains a set of general namelists and specific namelists to setup a computational decomposition and an IO decomposition. The computational decomposition should be setup to duplicate a realistic model data decomposition. The IO decomposition is generally not used, but in some cases, can be used and impacts IO performance. The IO decomposition is an intermediate decomposition that provides compatability between a relative arbitrary computational decomposition and the MPI-IO, netcdf, pnetcdf, or other IO layers. Depending on the IO methods used, only certain IO decompositions are valid. In general, the IO decomposition is not used and is set internally.

    -

    The namelist input file is called "testpio_in". The first namelist block, io_nml, contains some general settings:

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
    namelist io_nml
    casename string, user defined test case name
    nx_global integer, global size of "x" dimension
    ny_global integer, global size of "y" dimension
    nz_global integer, glboal size of "z" dimension
    ioFMT string, type and i/o method of data file ("bin","pnc","snc"), binary, pnetcdf, or serial netcdf
    rearr string, type of rearranging to be done ("none","mct","box","boxauto")
    nprocsIO integer, number of IO processors used only when rearr is not "none", if rearr is "none", then the IO decomposition will be the computational decomposition
    base integer, base pe associated with nprocIO striding
    stride integer, the stride of io pes across the global pe set. A stride=-1 directs PIO to calculate the stride automatically.
    num_aggregator integer, mpi-io number of aggregators, only used if no pio rearranging is done
    dir string, directory to write output data, this must exist before the model starts up
    num_iodofs tests either 1dof or 2dof init decomp interfaces (1,2)
    maxiter integer, the number of trials for the test
    DebugLevel integer, sets the debug level (0,1,2,3)
    compdof_input string, setting of the compDOF ('namelist' or a filename)
    compdof_output string, whether the compDOF is saved to disk ('none' or a filename)
    -

    Notes:

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    • the "mct" rearr option is not currently available
      • -
    • if rearr is set to "none", then the computational decomposition is also going to be used as the IO decomposition. The computation decomposition must therefore be suited to the underlying I/O methods.
      • -
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    • num_aggregator is used with mpi-io and no pio rearranging. mpi-io is only used with binary data.
      • -
    • nprocsIO, base, and stride implementation has some special options
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      • if nprocsIO > 0 and stride > 0, then use input values
        • -
      • if nprocsIO > 0 and stride <= 0, then stride=(npes-base)/nprocsIO
        • -
      • if nprocsIO <= 0 and stride > 0, then nprocsIO=(npes-base)/stride
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      • if nprocsIO <= 0 and stride <= 0, then nprocsIO=npes, base=0, stride=1
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    Two other namelist blocks exist to described the computational and IO decompositions, compdof_nml and iodof_nml. These namelist blocks are identical in use.

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    namelist compdof_nml - or - iodof_nml
    nblksppe integer, sets the number of blocks desired per pe, the default is one per pe for automatic decomposition. increasing this increases the flexibility of decompositions.
    grdorder string, sets the gridcell ordering within the block ("xyz","xzy","yxz","yzx","zxy","zyx")
    grddecomp string, sets up the block size with gdx, gdy, and gdz, see below, ("x","y","z","xy","xye","xz","xze","yz","yze", "xyz","xyze","setblk")
    gdx integer, "x" size of block
    gdy integer, "y" size of block
    gdz integer, "z" size of block
    blkorder string, sets the block ordering within the domain ("xyz","xzy","yxz","yzx","zxy","zyx")
    blkdecomp1 string, sets up the block / processor layout within the domain with bdx, bdy, and bdz, see below. ("x","y","z","xy","xye","xz","xze","yz","yze","xyz","xyze", "setblk","cont1d","cont1dm")
    blkdecomp2 string, provides an additional option to the block decomp after blkdecomp1 is computes ("","ysym2","ysym4")
    bdx integer, "x" numbers of contiguous blocks
    bdy integer, "y" numbers of contiguous blocks
    bdz integer, "z" numbers of contiguous blocks
    -

    A description of the decomposition implementation and some examples are provided below.

    -

    Testpio writes out several files including summary information to stdout, data files to the namelists directory, and a netcdf file summarizing the decompositions. The key output information is written to stdout and contains the timing information. In addition, a netcdf file called gdecomp.nc is written that provides both the block and task ids for each gridcell as computed by the decompositions. Finally, foo.* files are written by testpio using the methods specified.

    -

    Currently, the timing information is limited to the high level pio read/write calls which generally will also include copy and rearrange overhead as well as actual I/O time. Addition timers will be added in the future.

    -

    The test script is called testpio_run.pl, it uses the hostname function to determine the platform. New platforms can be added by editing the files build_defaults.xml and Utils.pm. If more than one configuration should be tested on a single platform you can provide two hostnames in this file and specify the name to test in a –host option to testpio_run.pl

    -

    There are several testpio_in files for the pio test suite. The ones that come with pio test specific things. In general, these tests include:

      -
    • -sn = serial netcdf and no rearrangement
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    • -sb = serial netcdf and box rearrangement
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    • -pn = parallel netcdf and no rearrangement
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    • -pb = parallel netcdf and box rearrangement
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    • -bn = binary I/O and no rearrangement
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    • -bb = binary I/O and box rearrangment and the test number (01, etc) is consistent across I/O methods with
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    • -01 = all data on root pe, only root pe active in I/O
      • -
    • -02 = simple 2d xy decomp across all pes with all pes active in I/O
      • -
    • -03 = all data on root pe, all pes active in I/O
      • -
    • -04 = simple 2d xy decomp with yxz ordering and stride=4 pes active in I/O
      • -
    • -05 = 2d xy decomp with 4 blocks/pe, yxz ordering, xy block decomp, and stride=4 pes active in I/O
      • -
    • -06 = 3d xy decomp with 4 blocks/pe, yxz ordering, xy block decomp, and stride=4 pes active in I/O
      • -
    • -07 = 3d xyz decomp with 16 blocks/pe, yxz ordering, xyz block decomp with block yzx ordering and stride=4 pes active in I/O
      • -
    • -08 = 2d xy decomp with 4 blocks/pe and yxz grid ordering, yxz block ordering and cont1d block decomp the rd01 and wr01 tests are distinct and test writing, reading and use of DOF data via pio methods.
      • -
    -

    PIO can use several backend libraries including netcdf, pnetcdf and mpi-io. For each library used, a compile time cpp flag is defined (eg _USEMPIIO). The test suite builds and tests the model for several combinations of these cpp flags.

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    • -snet = serial netcdf only
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    -Decomposition

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    The decomposition implementation supports the decomposition of a general 3 dimensional "nx * ny * nz" grid into multiple blocks of gridcells which are then ordered and assigned to processors. In general, blocks in the decomposition are rectangular, "gdx * gdy * gdz" and the same size, although some blocks around the edges of the domain may be smaller if the decomposition is uneven. Both gridcells within the block and blocks within the domain can be ordered in any of the possible dimension hierarchies, such as "xyz" where the first dimension is the fastest.

    -

    The gdx, gdy, and gdz inputs allow the user to specify the size in any dimension and the grddecomp input specifies which dimensions are to be further optimized. In general, automatic decomposition generation of 3 dimensional grids can be done in any of possible combination of dimensions, (x, y, z, xy, xz, yz, or xyz), with the other dimensions having a fixed block size. The automatic generation of the decomposition is based upon an internal algorithm that tries to determine the most "square" blocks with an additional constraint on minimizing the maximum number of gridcells across processors. If evenly divided grids are desired, use of the "e" addition to grddecomp specifies that the grid decomposition must be evenly divided. The setblk option uses the prescibed gdx, gdy, and gdz inputs without further automation.

    -

    The blkdecomp1 input works fundamentally the same way as the grddecomp in mapping blocks to processors, but has a few additional options. "cont1d" (contiguous 1d) basically unwraps the blocks in the order specified by the blkorder input and then decomposes that "1d" list of blocks onto processors by contiguously grouping blocks together and allocating them to a processor. The number of contiguous blocks that are allocated to a processor is the maximum of the values of bdx, bdy, and bdz inputs. Contiguous blocks are allocated to each processor in turn in a round robin fashion until all blocks are allocated. The "cont1dm" does basically the same thing except the number of contiguous blocks are set automatically such that each processor recieves only 1 set of contiguous blocks. The ysym2 and ysym4 blkdecomp2 options modify the original block layout such that the tasks assigned to the blocks are 2-way or 4-way symetric in the y axis.

    -

    The decomposition tool is extremely flexible, but arbitrary inputs will not always yield valid decompositions. If a valid decomposition cannot be computed based on the global grid size, number of pes, number of blocks desired, and decomposition options, the model will stop.

    -

    As indicated above, the IO decomposition must be suited to the IO methods, so decompositions are even further limited by those constraints. The testpio tool provides limited checking about whether the IO decomposition is valid for the IO method used. Since the IO output is written in "xyz" order, it's likely the best IO performance will be achieved with both grdorder and blkorder set to "xyz" for the IO decomposition.

    -

    Also note that in all cases, regardless of the decomposition, the global gridcell numbering and ordering in the output file is assumed to be "xyz" and defined as a single block. The number scheme in the examples below demonstrates how the namelist input relates back to the grid numbering on the local computational decomposition.

    -

    Some decomposition examples:

      -
    • -"B" is the block number
      • -
    • -"P" is the processor (1:npes) the block is associated with numbers are the local gridcell numbering within the block if the local dimensions are unrolled.
      • -
    -

    Standard xyz ordering, 2d decomp: note: blkdecomp plays no role since there is 1 block per pe 

    - nx_global  6       
- ny_global  4
- nz_global  1           ______________________________
- npes       4          |B3  P3        |B4  P4         |
- nblksppe   1          |              |               |
- grdorder   "xyz"      |              |               |
- grddecomp  "xy"       |              |               |
- gdx        0          |              |               |
- gdy        0          |--------------+---------------|
- gdz        0          |B1  P1        |B2  P2         |
- blkorder   "xyz"      |  4    5   6  |  4   5   6    |
- blkdecomp1 "xy"       |              |               |
- blkdecomp2 ""         |              |               |
- bdx        0          |  1    2   3  |  1   2   3    |
- bdy        0          |______________|_______________|
- bdz        0
-

    Same as above but yxz ordering, 2d decomp note: blkdecomp plays no role since there is 1 block per pe 

    - nx_global  6       
- ny_global  4
- nz_global  1           _____________________________
- npes       4          |B2  P2        |B4  P4        |
- nblksppe   1          |              |              |
- grdorder   "yxz"      |              |              |
- grddecomp  "xy"       |              |              |
- gdx        0          |              |              |
- gdy        0          |--------------+--------------|
- gdz        0          |B1  P1        |B3  P3        |
- blkorder   "yxz"      |  2    4   6  |  2   4   6   |
- blkdecomp1 "xy"       |              |              |
- blkdecomp2 ""         |              |              |
- bdx        0          |  1    3   5  |  1   3   5   |
- bdy        0          |______________|______________|
- bdz        0
-

    xyz grid ordering, 1d x decomp note: blkdecomp plays no role since there is 1 block per pe note: blkorder plays no role since it's a 1d decomp 

    - nx_global  8       
- ny_global  4
- nz_global  1           _____________________________________
- npes       4          |B1  P1  |B2  P2   |B3  P3  |B4  P4   |
- nblksppe   1          | 7   8  |  7   8  |        |         |
- grdorder   "xyz"      |        |         |        |         |
- grddecomp  "x"        |        |         |        |         |
- gdx        0          | 5   6  |  5   6  |        |         |
- gdy        0          |        |         |        |         |
- gdz        0          |        |         |        |         |
- blkorder   "yxz"      | 3   4  |  3   4  |        |         |
- blkdecomp1 "xy"       |        |         |        |         |
- blkdecomp2 ""         |        |         |        |         |
- bdx        0          | 1   2  |  1   2  |        |         |
- bdy        0          |________|_________|________|_________|
- bdz        0
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    yxz block ordering, 2d grid decomp, 2d block decomp, 4 block per pe 

    - nx_global  8       
- ny_global  4
- nz_global  1           _____________________________________
- npes       4          |B4  P2  |B8  P2   |B12  P4 |B16  P4  |
- nblksppe   4          |        |         |        |         |
- grdorder   "xyz"      |-----—+------—+-----—+------—|
- grddecomp  "xy"       |B3  P2  |B7  P2   |B11  P4 |B15  P4  |
- gdx        0          |        |         |        |         |
- gdy        0          |-----—+------—+-----—+------—|
- gdz        0          |B2  P1  |B6  P1   |B10  P3 |B14  P3  |
- blkorder   "yxz"      |        |         |        |         |
- blkdecomp1 "xy"       |-----—+------—+-----—+------—|
- blkdecomp2 ""         |B1  P1  |B5  P1   |B9   P3 |B13  P3  |
- bdx        0          | 1   2  | 1   2   |        |         |
- bdy        0          |________|_________|________|_________|
- bdz        0
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