From ae6c6dafea39590a1f642c2455520d94a36e4ca3 Mon Sep 17 00:00:00 2001
From: Kate Isaac <41767733+kweav@users.noreply.github.com>
Date: Thu, 12 Dec 2024 11:13:08 -0500
Subject: [PATCH] Update 01-intro.Rmd with code chunk names

Added code chunk names for chunks that use ottrpal::include_slide to add topics covered, intended audience and learning objectives slides
---
 01-intro.Rmd | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/01-intro.Rmd b/01-intro.Rmd
index b58011a..83e4653 100644
--- a/01-intro.Rmd
+++ b/01-intro.Rmd
@@ -13,7 +13,7 @@ ottrpal::include_slide("https://docs.google.com/presentation/d/1IJ_uFxJud7OdIAr6
 
 This is the second course in a two part series:
 
-```{r, fig.alt="Advanced Reproducibility for Cancer Informatics: What’s covered. Getting comfortable with GitHub concepts and workflow. Utilizing version control. Engaging in code review. Using a Docker image. Modifying a Docker image. Using Automation (github actions).", out.width = "100%", echo = FALSE}
+```{r topics_covered, fig.alt="Advanced Reproducibility for Cancer Informatics: What’s covered. Getting comfortable with GitHub concepts and workflow. Utilizing version control. Engaging in code review. Using a Docker image. Modifying a Docker image. Using Automation (github actions).", out.width = "100%", echo = FALSE}
 ottrpal::include_slide("https://docs.google.com/presentation/d/1IJ_uFxJud7OdIAr6p8ZOzvYs-SGDqa7g4cUHtUld03I/edit#slide=id.gfd7c7a0ba8_0_21")
 ```
 
@@ -36,13 +36,13 @@ This course introduces tools that help enhance reproducibility and replicability
 The course is intended for students in the biomedical sciences and researchers who use informatics tools in their research. It is the follow up course to the [Introduction to Reproducibility in Cancer Informatics course](https://jhudatascience.org/Reproducibility_in_Cancer_Informatics/)
 
 
-```{r, fig.alt="Intro to Reproducibility: For individuals who: Have some familiarity with R or Python - have written some scripts. Have not had formal training in computational methods. Have limited or no familiarity with GitHub. Advanced Reproducibility: For individuals who: Have completed the intro course and/or Have used GitHub somewhat.", out.width = "100%", echo = FALSE}
+```{r for_individuals_who, fig.alt="Intro to Reproducibility: For individuals who: Have some familiarity with R or Python - have written some scripts. Have not had formal training in computational methods. Have limited or no familiarity with GitHub. Advanced Reproducibility: For individuals who: Have completed the intro course and/or Have used GitHub somewhat.", out.width = "100%", echo = FALSE}
 ottrpal::include_slide("https://docs.google.com/presentation/d/1IJ_uFxJud7OdIAr6p8ZOzvYs-SGDqa7g4cUHtUld03I/edit#slide=id.g1173f7473f7_0_0")
 ```
 
 ## Curriculum  
 
-```{r, fig.alt = "This course will demonstrate how to: Become familiar with using GitHub in as a part of a analysis project workflow. Engage in code review steps on GitHub. Pull and use an existing Docker image for running an analysis. Make data shareable. Write a simple Github Actions. Obtain confidence to learn and apply additional reproducibility tools to an analysis.", echo = FALSE}
+```{r learning_objectives, fig.alt = "This course will demonstrate how to: Become familiar with using GitHub in as a part of a analysis project workflow. Engage in code review steps on GitHub. Pull and use an existing Docker image for running an analysis. Make data shareable. Write a simple Github Actions. Obtain confidence to learn and apply additional reproducibility tools to an analysis.", echo = FALSE}
 ottrpal::include_slide("https://docs.google.com/presentation/d/1IJ_uFxJud7OdIAr6p8ZOzvYs-SGDqa7g4cUHtUld03I/edit#slide=id.gd422c5de97_0_10")
 ```