diff --git a/docs/02-chapter_of_course.md b/docs/02-chapter_of_course.md index c222a524..a876ece8 100644 --- a/docs/02-chapter_of_course.md +++ b/docs/02-chapter_of_course.md @@ -202,13 +202,13 @@ devtools::session_info() ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2022-02-03 +## date 2022-02-04 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) -## bookdown 0.24 2022-02-03 [1] Github (rstudio/bookdown@88bc4ea) +## bookdown 0.24 2022-02-04 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) @@ -225,11 +225,11 @@ devtools::session_info() ## hms 0.5.3 2020-01-08 [1] RSPM (R 4.0.0) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## httr 1.4.2 2020-07-20 [1] RSPM (R 4.0.3) -## knitr 1.33 2022-02-03 [1] Github (yihui/knitr@a1052d1) +## knitr 1.33 2022-02-04 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr * 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) -## ottr 0.1.2 2022-02-03 [1] Github (jhudsl/ottr@eedbe3e) +## ottr 0.1.2 2022-02-04 [1] Github (jhudsl/ottr@b6da73c) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) @@ -241,19 +241,19 @@ devtools::session_info() ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) -## rlang 0.4.10 2022-02-03 [1] Github (r-lib/rlang@f0c9be5) -## rmarkdown 2.10 2022-02-03 [1] Github (rstudio/rmarkdown@02d3c25) +## rlang 0.4.10 2022-02-04 [1] Github (r-lib/rlang@f0c9be5) +## rmarkdown 2.10 2022-02-04 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) -## testthat 3.0.1 2022-02-03 [1] Github (R-lib/testthat@e99155a) +## testthat 3.0.1 2022-02-04 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) -## usethis 2.1.5.9000 2022-02-03 [1] Github (r-lib/usethis@57b109a) +## usethis 2.1.5.9000 2022-02-04 [1] Github (r-lib/usethis@57b109a) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## webshot 0.5.2 2019-11-22 [1] RSPM (R 4.0.3) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) -## xfun 0.26 2022-02-03 [1] Github (yihui/xfun@74c2a66) +## xfun 0.26 2022-02-04 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library diff --git a/docs/About.md b/docs/About.md index 6a8c0224..3fedaf0a 100644 --- a/docs/About.md +++ b/docs/About.md @@ -51,13 +51,13 @@ These credits are based on our [course contributors table guidelines](https://gi ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2022-02-03 +## date 2022-02-04 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) -## bookdown 0.24 2022-02-03 [1] Github (rstudio/bookdown@88bc4ea) +## bookdown 0.24 2022-02-04 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) @@ -70,7 +70,7 @@ These credits are based on our [course contributors table guidelines](https://gi ## fs 1.5.0 2020-07-31 [1] RSPM (R 4.0.3) ## glue 1.6.1 2022-01-22 [1] CRAN (R 4.0.2) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) -## knitr 1.33 2022-02-03 [1] Github (yihui/knitr@a1052d1) +## knitr 1.33 2022-02-04 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) @@ -82,16 +82,16 @@ These credits are based on our [course contributors table guidelines](https://gi ## purrr 0.3.4 2020-04-17 [1] RSPM (R 4.0.3) ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) -## rlang 0.4.10 2022-02-03 [1] Github (r-lib/rlang@f0c9be5) -## rmarkdown 2.10 2022-02-03 [1] Github (rstudio/rmarkdown@02d3c25) +## rlang 0.4.10 2022-02-04 [1] Github (r-lib/rlang@f0c9be5) +## rmarkdown 2.10 2022-02-04 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) -## testthat 3.0.1 2022-02-03 [1] Github (R-lib/testthat@e99155a) -## usethis 2.1.5.9000 2022-02-03 [1] Github (r-lib/usethis@57b109a) +## testthat 3.0.1 2022-02-04 [1] Github (R-lib/testthat@e99155a) +## usethis 2.1.5.9000 2022-02-04 [1] Github (r-lib/usethis@57b109a) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) -## xfun 0.26 2022-02-03 [1] Github (yihui/xfun@74c2a66) +## xfun 0.26 2022-02-04 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library diff --git a/docs/Course_Name.docx b/docs/Course_Name.docx index 3050e807..5076f9e6 100644 Binary files a/docs/Course_Name.docx and b/docs/Course_Name.docx differ diff --git a/docs/about-the-authors.html b/docs/about-the-authors.html index 1457d6da..723a9cfb 100644 --- a/docs/about-the-authors.html +++ b/docs/about-the-authors.html @@ -360,13 +360,13 @@

About the Authors

## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2022-02-03 +## date 2022-02-04 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) -## bookdown 0.24 2022-02-03 [1] Github (rstudio/bookdown@88bc4ea) +## bookdown 0.24 2022-02-04 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) @@ -380,7 +380,7 @@

About the Authors

## glue 1.6.1 2022-01-22 [1] CRAN (R 4.0.2) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) -## knitr 1.33 2022-02-03 [1] Github (yihui/knitr@a1052d1) +## knitr 1.33 2022-02-04 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) @@ -392,16 +392,16 @@

About the Authors

## purrr 0.3.4 2020-04-17 [1] RSPM (R 4.0.3) ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) -## rlang 0.4.10 2022-02-03 [1] Github (r-lib/rlang@f0c9be5) -## rmarkdown 2.10 2022-02-03 [1] Github (rstudio/rmarkdown@02d3c25) +## rlang 0.4.10 2022-02-04 [1] Github (r-lib/rlang@f0c9be5) +## rmarkdown 2.10 2022-02-04 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) -## testthat 3.0.1 2022-02-03 [1] Github (R-lib/testthat@e99155a) -## usethis 2.1.5.9000 2022-02-03 [1] Github (r-lib/usethis@57b109a) +## testthat 3.0.1 2022-02-04 [1] Github (R-lib/testthat@e99155a) +## usethis 2.1.5.9000 2022-02-04 [1] Github (r-lib/usethis@57b109a) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) -## xfun 0.26 2022-02-03 [1] Github (yihui/xfun@74c2a66) +## xfun 0.26 2022-02-04 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library diff --git a/docs/coursera/02-chapter_of_course.md b/docs/coursera/02-chapter_of_course.md index 3bf3f1c6..2959aebc 100644 --- a/docs/coursera/02-chapter_of_course.md +++ b/docs/coursera/02-chapter_of_course.md @@ -197,13 +197,13 @@ devtools::session_info() ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2022-02-03 +## date 2022-02-04 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) -## bookdown 0.24 2022-02-03 [1] Github (rstudio/bookdown@88bc4ea) +## bookdown 0.24 2022-02-04 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) @@ -221,11 +221,11 @@ devtools::session_info() ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## httr 1.4.2 2020-07-20 [1] RSPM (R 4.0.3) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) -## knitr 1.33 2022-02-03 [1] Github (yihui/knitr@a1052d1) +## knitr 1.33 2022-02-04 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr * 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) -## ottr 0.1.2 2022-02-03 [1] Github (jhudsl/ottr@eedbe3e) +## ottr 0.1.2 2022-02-04 [1] Github (jhudsl/ottr@b6da73c) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) @@ -237,18 +237,18 @@ devtools::session_info() ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) -## rlang 0.4.10 2022-02-03 [1] Github (r-lib/rlang@f0c9be5) -## rmarkdown 2.10 2022-02-03 [1] Github (rstudio/rmarkdown@02d3c25) +## rlang 0.4.10 2022-02-04 [1] Github (r-lib/rlang@f0c9be5) +## rmarkdown 2.10 2022-02-04 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) -## testthat 3.0.1 2022-02-03 [1] Github (R-lib/testthat@e99155a) +## testthat 3.0.1 2022-02-04 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) -## usethis 2.1.5.9000 2022-02-03 [1] Github (r-lib/usethis@57b109a) +## usethis 2.1.5.9000 2022-02-04 [1] Github (r-lib/usethis@57b109a) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) -## xfun 0.26 2022-02-03 [1] Github (yihui/xfun@74c2a66) +## xfun 0.26 2022-02-04 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library diff --git a/docs/coursera/About.md b/docs/coursera/About.md index 622ac3a1..2c187b40 100644 --- a/docs/coursera/About.md +++ b/docs/coursera/About.md @@ -51,13 +51,13 @@ These credits are based on our [course contributors table guidelines](https://gi ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2022-02-03 +## date 2022-02-04 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) -## bookdown 0.24 2022-02-03 [1] Github (rstudio/bookdown@88bc4ea) +## bookdown 0.24 2022-02-04 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) @@ -72,11 +72,11 @@ These credits are based on our [course contributors table guidelines](https://gi ## hms 0.5.3 2020-01-08 [1] RSPM (R 4.0.0) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) -## knitr 1.33 2022-02-03 [1] Github (yihui/knitr@a1052d1) +## knitr 1.33 2022-02-04 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) -## ottr 0.1.2 2022-02-03 [1] Github (jhudsl/ottr@eedbe3e) +## ottr 0.1.2 2022-02-04 [1] Github (jhudsl/ottr@b6da73c) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) @@ -88,18 +88,18 @@ These credits are based on our [course contributors table guidelines](https://gi ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) -## rlang 0.4.10 2022-02-03 [1] Github (r-lib/rlang@f0c9be5) -## rmarkdown 2.10 2022-02-03 [1] Github (rstudio/rmarkdown@02d3c25) +## rlang 0.4.10 2022-02-04 [1] Github (r-lib/rlang@f0c9be5) +## rmarkdown 2.10 2022-02-04 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) -## testthat 3.0.1 2022-02-03 [1] Github (R-lib/testthat@e99155a) +## testthat 3.0.1 2022-02-04 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) -## usethis 2.1.5.9000 2022-02-03 [1] Github (r-lib/usethis@57b109a) +## usethis 2.1.5.9000 2022-02-04 [1] Github (r-lib/usethis@57b109a) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) -## xfun 0.26 2022-02-03 [1] Github (yihui/xfun@74c2a66) +## xfun 0.26 2022-02-04 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library diff --git a/docs/coursera/about-the-authors.html b/docs/coursera/about-the-authors.html index 4cdf1a8b..cb7ac119 100644 --- a/docs/coursera/about-the-authors.html +++ b/docs/coursera/about-the-authors.html @@ -360,13 +360,13 @@

About the Authors

## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2022-02-03 +## date 2022-02-04 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) -## bookdown 0.24 2022-02-03 [1] Github (rstudio/bookdown@88bc4ea) +## bookdown 0.24 2022-02-04 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) @@ -381,11 +381,11 @@

About the Authors

## hms 0.5.3 2020-01-08 [1] RSPM (R 4.0.0) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) -## knitr 1.33 2022-02-03 [1] Github (yihui/knitr@a1052d1) +## knitr 1.33 2022-02-04 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) -## ottr 0.1.2 2022-02-03 [1] Github (jhudsl/ottr@eedbe3e) +## ottr 0.1.2 2022-02-04 [1] Github (jhudsl/ottr@b6da73c) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) @@ -397,18 +397,18 @@

About the Authors

## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) -## rlang 0.4.10 2022-02-03 [1] Github (r-lib/rlang@f0c9be5) -## rmarkdown 2.10 2022-02-03 [1] Github (rstudio/rmarkdown@02d3c25) +## rlang 0.4.10 2022-02-04 [1] Github (r-lib/rlang@f0c9be5) +## rmarkdown 2.10 2022-02-04 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) -## testthat 3.0.1 2022-02-03 [1] Github (R-lib/testthat@e99155a) +## testthat 3.0.1 2022-02-04 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) -## usethis 2.1.5.9000 2022-02-03 [1] Github (r-lib/usethis@57b109a) +## usethis 2.1.5.9000 2022-02-04 [1] Github (r-lib/usethis@57b109a) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) -## xfun 0.26 2022-02-03 [1] Github (yihui/xfun@74c2a66) +## xfun 0.26 2022-02-04 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library diff --git a/docs/coursera/resources/Dockerfile b/docs/coursera/resources/Dockerfile new file mode 100644 index 00000000..46fc78d0 --- /dev/null +++ b/docs/coursera/resources/Dockerfile @@ -0,0 +1,19 @@ +FROM jhudsl/course_template +LABEL maintainer="your_email.com" + +#################### EXAMPLES OF INSTALLING PACKAGES ########################### +# Install a Linux/Ubuntu package +# RUN apt-get update && apt-get install -y --no-install-recommends \ +# package_name + +# Install a package from CRAN +# RUN Rscript -e "install.packages( \ +# c('package_name'))" + +# Install a package from Bioconductor +# RUN Rscript -e "options(warn = 2); BiocManager::install( \ +# c('package_name') + +# Add a python package +# RUN RUN pip3 install \ +# "somepackage==0.1.0" diff --git a/docs/coursera/search_index.json b/docs/coursera/search_index.json index 891835d7..548e43db 100644 --- a/docs/coursera/search_index.json +++ b/docs/coursera/search_index.json @@ -1 +1 @@ -[["index.html", "Course Name About this Course", " Course Name February, 2022 About this Course "],["introduction.html", "Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience 1.3 Curriculum", " Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience The course is intended for … 1.3 Curriculum The course covers… "],["a-new-chapter.html", "Chapter 2 A new chapter 2.1 Learning Objectives 2.2 Libraries", " Chapter 2 A new chapter *If you haven’t yet read the getting started Wiki pages; start there Every chapter needs to start out with this chunk of code: 2.1 Learning Objectives *Every chapter also needs Learning objectives that will look like this: This chapter will cover: {You can use https://tips.uark.edu/using-blooms-taxonomy/ to define some learning objectives here} {Another learning objective} 2.2 Libraries For this chapter, we’ll need the following packages attached: *Remember to add any additional packages you need to your course’s own docker image. library(magrittr) "],["topic-of-section.html", "Chapter 3 Topic of Section 3.1 Subtopic 3.2 Print out session info", " Chapter 3 Topic of Section You can write all your text in sections like this! 3.1 Subtopic Here’s a subheading and some text in this subsection! 3.1.1 Code examples You can demonstrate code like this: output_dir <- file.path("resources", "code_output") if (!dir.exists(output_dir)) { dir.create(output_dir) } And make plots too: hist_plot <- hist(iris$Sepal.Length) You can also save these plots to file: png(file.path(output_dir, "test_plot.png")) hist_plot ## $breaks ## [1] 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 ## ## $counts ## [1] 5 27 27 30 31 18 6 6 ## ## $density ## [1] 0.06666667 0.36000000 0.36000000 0.40000000 0.41333333 0.24000000 0.08000000 ## [8] 0.08000000 ## ## $mids ## [1] 4.25 4.75 5.25 5.75 6.25 6.75 7.25 7.75 ## ## $xname ## [1] "iris$Sepal.Length" ## ## $equidist ## [1] TRUE ## ## attr(,"class") ## [1] "histogram" dev.off() ## png ## 2 3.1.2 Image example How to include a Google slide. It’s simplest to use the ottr package: But if you have the slide or some other image locally downloaded you can also use html like this: 3.1.3 Video examples To show videos in your course, you can use markdown syntax like this: A video we want to show Alternatively, you can use knitr::include_url() like this: Note that we are using echo=FALSE in the code chunk because we don’t want the code part of this to show up. If you are unfamiliar with how R Markdown code chunks work, read this. OR this works: 3.1.4 Links to files This works: Or this: This works. Or this: 3.1.5 Links to websites Examples of including a website link. This works: OR this: Another link OR this: 3.1.6 Citation examples We can put citations at the end of a sentence like this (Allaire et al. 2021). Or multiple citations Xie, Allaire, and Grolemund (2018). but they need a ; separator (Allaire et al. 2021; Xie, Allaire, and Grolemund 2018). In text, we can put citations like this Allaire et al. (2021). 3.1.7 FYI boxes Please click on the subsection headers in the left hand navigation bar (e.g., 2.1, 4.3) a second time to expand the table of contents and enable the scroll_highlight feature (see more). 3.1.8 Dropdown summaries You can hide additional information in a dropdown menu Here’s more words that are hidden. 3.2 Print out session info You should print out session info when you have code for reproducibility purposes. devtools::session_info() ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.0.2 (2020-06-22) ## os Ubuntu 20.04.3 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2022-02-03 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) ## bookdown 0.24 2022-02-03 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) ## curl 4.3 2019-12-02 [1] RSPM (R 4.0.3) ## desc 1.2.0 2018-05-01 [1] RSPM (R 4.0.3) ## devtools 2.3.2 2020-09-18 [1] RSPM (R 4.0.3) ## digest 0.6.25 2020-02-23 [1] RSPM (R 4.0.0) ## ellipsis 0.3.1 2020-05-15 [1] RSPM (R 4.0.3) ## evaluate 0.14 2019-05-28 [1] RSPM (R 4.0.3) ## fansi 0.4.1 2020-01-08 [1] RSPM (R 4.0.0) ## fs 1.5.0 2020-07-31 [1] RSPM (R 4.0.3) ## glue 1.6.1 2022-01-22 [1] CRAN (R 4.0.2) ## highr 0.8 2019-03-20 [1] RSPM (R 4.0.3) ## hms 0.5.3 2020-01-08 [1] RSPM (R 4.0.0) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## httr 1.4.2 2020-07-20 [1] RSPM (R 4.0.3) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) ## knitr 1.33 2022-02-03 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr * 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) ## ottr 0.1.2 2022-02-03 [1] Github (jhudsl/ottr@eedbe3e) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) ## pkgload 1.1.0 2020-05-29 [1] RSPM (R 4.0.3) ## prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.0.3) ## processx 3.4.4 2020-09-03 [1] RSPM (R 4.0.2) ## ps 1.3.4 2020-08-11 [1] RSPM (R 4.0.2) ## purrr 0.3.4 2020-04-17 [1] RSPM (R 4.0.3) ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) ## rlang 0.4.10 2022-02-03 [1] Github (r-lib/rlang@f0c9be5) ## rmarkdown 2.10 2022-02-03 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) ## testthat 3.0.1 2022-02-03 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) ## usethis 2.1.5.9000 2022-02-03 [1] Github (r-lib/usethis@57b109a) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) ## xfun 0.26 2022-02-03 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library References "],["about-the-authors.html", "About the Authors", " About the Authors These credits are based on our course contributors table guidelines.     Credits Names Pedagogy Lead Content Instructor(s) FirstName LastName Lecturer(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved Delivered the course in some way - video or audio Content Author(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved If any other authors besides lead instructor Content Contributor(s) (include section name/link in parentheses) - make new line if more than one section involved Wrote less than a chapter Content Editor(s)/Reviewer(s) Checked your content Content Director(s) Helped guide the content direction Content Consultants (include chapter name/link in parentheses or word “General”) - make new line if more than one chapter involved Gave high level advice on content Acknowledgments Gave small assistance to content but not to the level of consulting Production Content Publisher(s) Helped with publishing platform Content Publishing Reviewer(s) Reviewed overall content and aesthetics on publishing platform Technical Course Publishing Engineer(s) Helped with the code for the technical aspects related to the specific course generation Template Publishing Engineers Candace Savonen, Carrie Wright Publishing Maintenance Engineer Candace Savonen Technical Publishing Stylists Carrie Wright, Candace Savonen Package Developers (ottr) John Muschelli, Candace Savonen, Carrie Wright Art and Design Illustrator(s) Created graphics for the course Figure Artist(s) Created figures/plots for course Videographer(s) Filmed videos Videography Editor(s) Edited film Audiographer(s) Recorded audio Audiography Editor(s) Edited audio recordings Funding Funder(s) Institution/individual who funded course including grant number Funding Staff Staff members who help with funding   ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.0.2 (2020-06-22) ## os Ubuntu 20.04.3 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2022-02-03 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) ## bookdown 0.24 2022-02-03 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) ## desc 1.2.0 2018-05-01 [1] RSPM (R 4.0.3) ## devtools 2.3.2 2020-09-18 [1] RSPM (R 4.0.3) ## digest 0.6.25 2020-02-23 [1] RSPM (R 4.0.0) ## ellipsis 0.3.1 2020-05-15 [1] RSPM (R 4.0.3) ## evaluate 0.14 2019-05-28 [1] RSPM (R 4.0.3) ## fansi 0.4.1 2020-01-08 [1] RSPM (R 4.0.0) ## fs 1.5.0 2020-07-31 [1] RSPM (R 4.0.3) ## glue 1.6.1 2022-01-22 [1] CRAN (R 4.0.2) ## hms 0.5.3 2020-01-08 [1] RSPM (R 4.0.0) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) ## knitr 1.33 2022-02-03 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) ## ottr 0.1.2 2022-02-03 [1] Github (jhudsl/ottr@eedbe3e) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) ## pkgload 1.1.0 2020-05-29 [1] RSPM (R 4.0.3) ## prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.0.3) ## processx 3.4.4 2020-09-03 [1] RSPM (R 4.0.2) ## ps 1.3.4 2020-08-11 [1] RSPM (R 4.0.2) ## purrr 0.3.4 2020-04-17 [1] RSPM (R 4.0.3) ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) ## rlang 0.4.10 2022-02-03 [1] Github (r-lib/rlang@f0c9be5) ## rmarkdown 2.10 2022-02-03 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) ## testthat 3.0.1 2022-02-03 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) ## usethis 2.1.5.9000 2022-02-03 [1] Github (r-lib/usethis@57b109a) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) ## xfun 0.26 2022-02-03 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library "],["references.html", "References", " References "],["404.html", "Page not found", " Page not found The page you requested cannot be found (perhaps it was moved or renamed). You may want to try searching to find the page's new location, or use the table of contents to find the page you are looking for. "]] +[["index.html", "Course Name About this Course", " Course Name February, 2022 About this Course "],["introduction.html", "Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience 1.3 Curriculum", " Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience The course is intended for … 1.3 Curriculum The course covers… "],["a-new-chapter.html", "Chapter 2 A new chapter 2.1 Learning Objectives 2.2 Libraries", " Chapter 2 A new chapter *If you haven’t yet read the getting started Wiki pages; start there Every chapter needs to start out with this chunk of code: 2.1 Learning Objectives *Every chapter also needs Learning objectives that will look like this: This chapter will cover: {You can use https://tips.uark.edu/using-blooms-taxonomy/ to define some learning objectives here} {Another learning objective} 2.2 Libraries For this chapter, we’ll need the following packages attached: *Remember to add any additional packages you need to your course’s own docker image. library(magrittr) "],["topic-of-section.html", "Chapter 3 Topic of Section 3.1 Subtopic 3.2 Print out session info", " Chapter 3 Topic of Section You can write all your text in sections like this! 3.1 Subtopic Here’s a subheading and some text in this subsection! 3.1.1 Code examples You can demonstrate code like this: output_dir <- file.path("resources", "code_output") if (!dir.exists(output_dir)) { dir.create(output_dir) } And make plots too: hist_plot <- hist(iris$Sepal.Length) You can also save these plots to file: png(file.path(output_dir, "test_plot.png")) hist_plot ## $breaks ## [1] 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 ## ## $counts ## [1] 5 27 27 30 31 18 6 6 ## ## $density ## [1] 0.06666667 0.36000000 0.36000000 0.40000000 0.41333333 0.24000000 0.08000000 ## [8] 0.08000000 ## ## $mids ## [1] 4.25 4.75 5.25 5.75 6.25 6.75 7.25 7.75 ## ## $xname ## [1] "iris$Sepal.Length" ## ## $equidist ## [1] TRUE ## ## attr(,"class") ## [1] "histogram" dev.off() ## png ## 2 3.1.2 Image example How to include a Google slide. It’s simplest to use the ottr package: But if you have the slide or some other image locally downloaded you can also use html like this: 3.1.3 Video examples To show videos in your course, you can use markdown syntax like this: A video we want to show Alternatively, you can use knitr::include_url() like this: Note that we are using echo=FALSE in the code chunk because we don’t want the code part of this to show up. If you are unfamiliar with how R Markdown code chunks work, read this. OR this works: 3.1.4 Links to files This works: Or this: This works. Or this: 3.1.5 Links to websites Examples of including a website link. This works: OR this: Another link OR this: 3.1.6 Citation examples We can put citations at the end of a sentence like this (Allaire et al. 2021). Or multiple citations Xie, Allaire, and Grolemund (2018). but they need a ; separator (Allaire et al. 2021; Xie, Allaire, and Grolemund 2018). In text, we can put citations like this Allaire et al. (2021). 3.1.7 FYI boxes Please click on the subsection headers in the left hand navigation bar (e.g., 2.1, 4.3) a second time to expand the table of contents and enable the scroll_highlight feature (see more). 3.1.8 Dropdown summaries You can hide additional information in a dropdown menu Here’s more words that are hidden. 3.2 Print out session info You should print out session info when you have code for reproducibility purposes. devtools::session_info() ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.0.2 (2020-06-22) ## os Ubuntu 20.04.3 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2022-02-04 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) ## bookdown 0.24 2022-02-04 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) ## curl 4.3 2019-12-02 [1] RSPM (R 4.0.3) ## desc 1.2.0 2018-05-01 [1] RSPM (R 4.0.3) ## devtools 2.3.2 2020-09-18 [1] RSPM (R 4.0.3) ## digest 0.6.25 2020-02-23 [1] RSPM (R 4.0.0) ## ellipsis 0.3.1 2020-05-15 [1] RSPM (R 4.0.3) ## evaluate 0.14 2019-05-28 [1] RSPM (R 4.0.3) ## fansi 0.4.1 2020-01-08 [1] RSPM (R 4.0.0) ## fs 1.5.0 2020-07-31 [1] RSPM (R 4.0.3) ## glue 1.6.1 2022-01-22 [1] CRAN (R 4.0.2) ## highr 0.8 2019-03-20 [1] RSPM (R 4.0.3) ## hms 0.5.3 2020-01-08 [1] RSPM (R 4.0.0) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## httr 1.4.2 2020-07-20 [1] RSPM (R 4.0.3) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) ## knitr 1.33 2022-02-04 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr * 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) ## ottr 0.1.2 2022-02-04 [1] Github (jhudsl/ottr@b6da73c) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) ## pkgload 1.1.0 2020-05-29 [1] RSPM (R 4.0.3) ## prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.0.3) ## processx 3.4.4 2020-09-03 [1] RSPM (R 4.0.2) ## ps 1.3.4 2020-08-11 [1] RSPM (R 4.0.2) ## purrr 0.3.4 2020-04-17 [1] RSPM (R 4.0.3) ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) ## rlang 0.4.10 2022-02-04 [1] Github (r-lib/rlang@f0c9be5) ## rmarkdown 2.10 2022-02-04 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) ## testthat 3.0.1 2022-02-04 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) ## usethis 2.1.5.9000 2022-02-04 [1] Github (r-lib/usethis@57b109a) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) ## xfun 0.26 2022-02-04 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library References "],["about-the-authors.html", "About the Authors", " About the Authors These credits are based on our course contributors table guidelines.     Credits Names Pedagogy Lead Content Instructor(s) FirstName LastName Lecturer(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved Delivered the course in some way - video or audio Content Author(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved If any other authors besides lead instructor Content Contributor(s) (include section name/link in parentheses) - make new line if more than one section involved Wrote less than a chapter Content Editor(s)/Reviewer(s) Checked your content Content Director(s) Helped guide the content direction Content Consultants (include chapter name/link in parentheses or word “General”) - make new line if more than one chapter involved Gave high level advice on content Acknowledgments Gave small assistance to content but not to the level of consulting Production Content Publisher(s) Helped with publishing platform Content Publishing Reviewer(s) Reviewed overall content and aesthetics on publishing platform Technical Course Publishing Engineer(s) Helped with the code for the technical aspects related to the specific course generation Template Publishing Engineers Candace Savonen, Carrie Wright Publishing Maintenance Engineer Candace Savonen Technical Publishing Stylists Carrie Wright, Candace Savonen Package Developers (ottr) John Muschelli, Candace Savonen, Carrie Wright Art and Design Illustrator(s) Created graphics for the course Figure Artist(s) Created figures/plots for course Videographer(s) Filmed videos Videography Editor(s) Edited film Audiographer(s) Recorded audio Audiography Editor(s) Edited audio recordings Funding Funder(s) Institution/individual who funded course including grant number Funding Staff Staff members who help with funding   ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.0.2 (2020-06-22) ## os Ubuntu 20.04.3 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2022-02-04 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) ## bookdown 0.24 2022-02-04 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) ## desc 1.2.0 2018-05-01 [1] RSPM (R 4.0.3) ## devtools 2.3.2 2020-09-18 [1] RSPM (R 4.0.3) ## digest 0.6.25 2020-02-23 [1] RSPM (R 4.0.0) ## ellipsis 0.3.1 2020-05-15 [1] RSPM (R 4.0.3) ## evaluate 0.14 2019-05-28 [1] RSPM (R 4.0.3) ## fansi 0.4.1 2020-01-08 [1] RSPM (R 4.0.0) ## fs 1.5.0 2020-07-31 [1] RSPM (R 4.0.3) ## glue 1.6.1 2022-01-22 [1] CRAN (R 4.0.2) ## hms 0.5.3 2020-01-08 [1] RSPM (R 4.0.0) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) ## knitr 1.33 2022-02-04 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) ## ottr 0.1.2 2022-02-04 [1] Github (jhudsl/ottr@b6da73c) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) ## pkgload 1.1.0 2020-05-29 [1] RSPM (R 4.0.3) ## prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.0.3) ## processx 3.4.4 2020-09-03 [1] RSPM (R 4.0.2) ## ps 1.3.4 2020-08-11 [1] RSPM (R 4.0.2) ## purrr 0.3.4 2020-04-17 [1] RSPM (R 4.0.3) ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) ## rlang 0.4.10 2022-02-04 [1] Github (r-lib/rlang@f0c9be5) ## rmarkdown 2.10 2022-02-04 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) ## testthat 3.0.1 2022-02-04 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) ## usethis 2.1.5.9000 2022-02-04 [1] Github (r-lib/usethis@57b109a) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) ## xfun 0.26 2022-02-04 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library "],["references.html", "References", " References "],["404.html", "Page not found", " Page not found The page you requested cannot be found (perhaps it was moved or renamed). You may want to try searching to find the page's new location, or use the table of contents to find the page you are looking for. "]] diff --git a/docs/coursera/topic-of-section.html b/docs/coursera/topic-of-section.html index e999abc5..7f90cd16 100644 --- a/docs/coursera/topic-of-section.html +++ b/docs/coursera/topic-of-section.html @@ -348,13 +348,13 @@

3.2 Print out session info

## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2022-02-03 +## date 2022-02-04 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) -## bookdown 0.24 2022-02-03 [1] Github (rstudio/bookdown@88bc4ea) +## bookdown 0.24 2022-02-04 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) @@ -372,11 +372,11 @@

3.2 Print out session info

## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## httr 1.4.2 2020-07-20 [1] RSPM (R 4.0.3) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) -## knitr 1.33 2022-02-03 [1] Github (yihui/knitr@a1052d1) +## knitr 1.33 2022-02-04 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr * 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) -## ottr 0.1.2 2022-02-03 [1] Github (jhudsl/ottr@eedbe3e) +## ottr 0.1.2 2022-02-04 [1] Github (jhudsl/ottr@b6da73c) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) @@ -388,18 +388,18 @@

3.2 Print out session info

## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) -## rlang 0.4.10 2022-02-03 [1] Github (r-lib/rlang@f0c9be5) -## rmarkdown 2.10 2022-02-03 [1] Github (rstudio/rmarkdown@02d3c25) +## rlang 0.4.10 2022-02-04 [1] Github (r-lib/rlang@f0c9be5) +## rmarkdown 2.10 2022-02-04 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) -## testthat 3.0.1 2022-02-03 [1] Github (R-lib/testthat@e99155a) +## testthat 3.0.1 2022-02-04 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) -## usethis 2.1.5.9000 2022-02-03 [1] Github (r-lib/usethis@57b109a) +## usethis 2.1.5.9000 2022-02-04 [1] Github (r-lib/usethis@57b109a) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) -## xfun 0.26 2022-02-03 [1] Github (yihui/xfun@74c2a66) +## xfun 0.26 2022-02-04 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library diff --git a/docs/search_index.json b/docs/search_index.json index 7efeadbf..60e186e1 100644 --- a/docs/search_index.json +++ b/docs/search_index.json @@ -1 +1 @@ -[["index.html", "Course Name About this Course", " Course Name February, 2022 About this Course "],["introduction.html", "Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience 1.3 Curriculum", " Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience The course is intended for … 1.3 Curriculum The course covers… "],["a-new-chapter.html", "Chapter 2 A new chapter 2.1 Learning Objectives 2.2 Libraries", " Chapter 2 A new chapter *If you haven’t yet read the getting started Wiki pages; start there Every chapter needs to start out with this chunk of code: 2.1 Learning Objectives *Every chapter also needs Learning objectives that will look like this: This chapter will cover: {You can use https://tips.uark.edu/using-blooms-taxonomy/ to define some learning objectives here} {Another learning objective} 2.2 Libraries For this chapter, we’ll need the following packages attached: *Remember to add any additional packages you need to your course’s own docker image. library(magrittr) "],["topic-of-section.html", "Chapter 3 Topic of Section 3.1 Subtopic 3.2 Print out session info", " Chapter 3 Topic of Section You can write all your text in sections like this! 3.1 Subtopic Here’s a subheading and some text in this subsection! 3.1.1 Code examples You can demonstrate code like this: output_dir <- file.path("resources", "code_output") if (!dir.exists(output_dir)) { dir.create(output_dir) } And make plots too: hist_plot <- hist(iris$Sepal.Length) You can also save these plots to file: png(file.path(output_dir, "test_plot.png")) hist_plot ## $breaks ## [1] 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 ## ## $counts ## [1] 5 27 27 30 31 18 6 6 ## ## $density ## [1] 0.06666667 0.36000000 0.36000000 0.40000000 0.41333333 0.24000000 0.08000000 ## [8] 0.08000000 ## ## $mids ## [1] 4.25 4.75 5.25 5.75 6.25 6.75 7.25 7.75 ## ## $xname ## [1] "iris$Sepal.Length" ## ## $equidist ## [1] TRUE ## ## attr(,"class") ## [1] "histogram" dev.off() ## png ## 2 3.1.2 Image example How to include a Google slide. It’s simplest to use the ottr package: But if you have the slide or some other image locally downloaded you can also use html like this: 3.1.3 Video examples To show videos in your course, you can use markdown syntax like this: A video we want to show Alternatively, you can use knitr::include_url() like this: Note that we are using echo=FALSE in the code chunk because we don’t want the code part of this to show up. If you are unfamiliar with how R Markdown code chunks work, read this. OR this works: 3.1.4 Links to files This works: Or this: This works. Or this: 3.1.5 Links to websites Examples of including a website link. This works: OR this: Another link OR this: 3.1.6 Citation examples We can put citations at the end of a sentence like this (Allaire et al. 2021). Or multiple citations Xie, Allaire, and Grolemund (2018). but they need a ; separator (Allaire et al. 2021; Xie, Allaire, and Grolemund 2018). In text, we can put citations like this Allaire et al. (2021). 3.1.7 FYI boxes Please click on the subsection headers in the left hand navigation bar (e.g., 2.1, 4.3) a second time to expand the table of contents and enable the scroll_highlight feature (see more). 3.1.8 Dropdown summaries You can hide additional information in a dropdown menu Here’s more words that are hidden. 3.2 Print out session info You should print out session info when you have code for reproducibility purposes. devtools::session_info() ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.0.2 (2020-06-22) ## os Ubuntu 20.04.3 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2022-02-03 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) ## bookdown 0.24 2022-02-03 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) ## curl 4.3 2019-12-02 [1] RSPM (R 4.0.3) ## desc 1.2.0 2018-05-01 [1] RSPM (R 4.0.3) ## devtools 2.3.2 2020-09-18 [1] RSPM (R 4.0.3) ## digest 0.6.25 2020-02-23 [1] RSPM (R 4.0.0) ## ellipsis 0.3.1 2020-05-15 [1] RSPM (R 4.0.3) ## evaluate 0.14 2019-05-28 [1] RSPM (R 4.0.3) ## fansi 0.4.1 2020-01-08 [1] RSPM (R 4.0.0) ## fs 1.5.0 2020-07-31 [1] RSPM (R 4.0.3) ## glue 1.6.1 2022-01-22 [1] CRAN (R 4.0.2) ## highr 0.8 2019-03-20 [1] RSPM (R 4.0.3) ## hms 0.5.3 2020-01-08 [1] RSPM (R 4.0.0) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## httr 1.4.2 2020-07-20 [1] RSPM (R 4.0.3) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) ## knitr 1.33 2022-02-03 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr * 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) ## ottr 0.1.2 2022-02-03 [1] Github (jhudsl/ottr@eedbe3e) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) ## pkgload 1.1.0 2020-05-29 [1] RSPM (R 4.0.3) ## prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.0.3) ## processx 3.4.4 2020-09-03 [1] RSPM (R 4.0.2) ## ps 1.3.4 2020-08-11 [1] RSPM (R 4.0.2) ## purrr 0.3.4 2020-04-17 [1] RSPM (R 4.0.3) ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) ## rlang 0.4.10 2022-02-03 [1] Github (r-lib/rlang@f0c9be5) ## rmarkdown 2.10 2022-02-03 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) ## testthat 3.0.1 2022-02-03 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) ## usethis 2.1.5.9000 2022-02-03 [1] Github (r-lib/usethis@57b109a) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) ## xfun 0.26 2022-02-03 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library References "],["about-the-authors.html", "About the Authors", " About the Authors These credits are based on our course contributors table guidelines.     Credits Names Pedagogy Lead Content Instructor(s) FirstName LastName Lecturer(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved Delivered the course in some way - video or audio Content Author(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved If any other authors besides lead instructor Content Contributor(s) (include section name/link in parentheses) - make new line if more than one section involved Wrote less than a chapter Content Editor(s)/Reviewer(s) Checked your content Content Director(s) Helped guide the content direction Content Consultants (include chapter name/link in parentheses or word “General”) - make new line if more than one chapter involved Gave high level advice on content Acknowledgments Gave small assistance to content but not to the level of consulting Production Content Publisher(s) Helped with publishing platform Content Publishing Reviewer(s) Reviewed overall content and aesthetics on publishing platform Technical Course Publishing Engineer(s) Helped with the code for the technical aspects related to the specific course generation Template Publishing Engineers Candace Savonen, Carrie Wright Publishing Maintenance Engineer Candace Savonen Technical Publishing Stylists Carrie Wright, Candace Savonen Package Developers (ottr) John Muschelli, Candace Savonen, Carrie Wright Art and Design Illustrator(s) Created graphics for the course Figure Artist(s) Created figures/plots for course Videographer(s) Filmed videos Videography Editor(s) Edited film Audiographer(s) Recorded audio Audiography Editor(s) Edited audio recordings Funding Funder(s) Institution/individual who funded course including grant number Funding Staff Staff members who help with funding   ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.0.2 (2020-06-22) ## os Ubuntu 20.04.3 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2022-02-03 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) ## bookdown 0.24 2022-02-03 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) ## desc 1.2.0 2018-05-01 [1] RSPM (R 4.0.3) ## devtools 2.3.2 2020-09-18 [1] RSPM (R 4.0.3) ## digest 0.6.25 2020-02-23 [1] RSPM (R 4.0.0) ## ellipsis 0.3.1 2020-05-15 [1] RSPM (R 4.0.3) ## evaluate 0.14 2019-05-28 [1] RSPM (R 4.0.3) ## fansi 0.4.1 2020-01-08 [1] RSPM (R 4.0.0) ## fs 1.5.0 2020-07-31 [1] RSPM (R 4.0.3) ## glue 1.6.1 2022-01-22 [1] CRAN (R 4.0.2) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) ## knitr 1.33 2022-02-03 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgload 1.1.0 2020-05-29 [1] RSPM (R 4.0.3) ## prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.0.3) ## processx 3.4.4 2020-09-03 [1] RSPM (R 4.0.2) ## ps 1.3.4 2020-08-11 [1] RSPM (R 4.0.2) ## purrr 0.3.4 2020-04-17 [1] RSPM (R 4.0.3) ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) ## rlang 0.4.10 2022-02-03 [1] Github (r-lib/rlang@f0c9be5) ## rmarkdown 2.10 2022-02-03 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) ## testthat 3.0.1 2022-02-03 [1] Github (R-lib/testthat@e99155a) ## usethis 2.1.5.9000 2022-02-03 [1] Github (r-lib/usethis@57b109a) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) ## xfun 0.26 2022-02-03 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library "],["references.html", "References", " References "],["404.html", "Page not found", " Page not found The page you requested cannot be found (perhaps it was moved or renamed). You may want to try searching to find the page's new location, or use the table of contents to find the page you are looking for. "]] +[["index.html", "Course Name About this Course", " Course Name February, 2022 About this Course "],["introduction.html", "Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience 1.3 Curriculum", " Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience The course is intended for … 1.3 Curriculum The course covers… "],["a-new-chapter.html", "Chapter 2 A new chapter 2.1 Learning Objectives 2.2 Libraries", " Chapter 2 A new chapter *If you haven’t yet read the getting started Wiki pages; start there Every chapter needs to start out with this chunk of code: 2.1 Learning Objectives *Every chapter also needs Learning objectives that will look like this: This chapter will cover: {You can use https://tips.uark.edu/using-blooms-taxonomy/ to define some learning objectives here} {Another learning objective} 2.2 Libraries For this chapter, we’ll need the following packages attached: *Remember to add any additional packages you need to your course’s own docker image. library(magrittr) "],["topic-of-section.html", "Chapter 3 Topic of Section 3.1 Subtopic 3.2 Print out session info", " Chapter 3 Topic of Section You can write all your text in sections like this! 3.1 Subtopic Here’s a subheading and some text in this subsection! 3.1.1 Code examples You can demonstrate code like this: output_dir <- file.path("resources", "code_output") if (!dir.exists(output_dir)) { dir.create(output_dir) } And make plots too: hist_plot <- hist(iris$Sepal.Length) You can also save these plots to file: png(file.path(output_dir, "test_plot.png")) hist_plot ## $breaks ## [1] 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 ## ## $counts ## [1] 5 27 27 30 31 18 6 6 ## ## $density ## [1] 0.06666667 0.36000000 0.36000000 0.40000000 0.41333333 0.24000000 0.08000000 ## [8] 0.08000000 ## ## $mids ## [1] 4.25 4.75 5.25 5.75 6.25 6.75 7.25 7.75 ## ## $xname ## [1] "iris$Sepal.Length" ## ## $equidist ## [1] TRUE ## ## attr(,"class") ## [1] "histogram" dev.off() ## png ## 2 3.1.2 Image example How to include a Google slide. It’s simplest to use the ottr package: But if you have the slide or some other image locally downloaded you can also use html like this: 3.1.3 Video examples To show videos in your course, you can use markdown syntax like this: A video we want to show Alternatively, you can use knitr::include_url() like this: Note that we are using echo=FALSE in the code chunk because we don’t want the code part of this to show up. If you are unfamiliar with how R Markdown code chunks work, read this. OR this works: 3.1.4 Links to files This works: Or this: This works. Or this: 3.1.5 Links to websites Examples of including a website link. This works: OR this: Another link OR this: 3.1.6 Citation examples We can put citations at the end of a sentence like this (Allaire et al. 2021). Or multiple citations Xie, Allaire, and Grolemund (2018). but they need a ; separator (Allaire et al. 2021; Xie, Allaire, and Grolemund 2018). In text, we can put citations like this Allaire et al. (2021). 3.1.7 FYI boxes Please click on the subsection headers in the left hand navigation bar (e.g., 2.1, 4.3) a second time to expand the table of contents and enable the scroll_highlight feature (see more). 3.1.8 Dropdown summaries You can hide additional information in a dropdown menu Here’s more words that are hidden. 3.2 Print out session info You should print out session info when you have code for reproducibility purposes. devtools::session_info() ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.0.2 (2020-06-22) ## os Ubuntu 20.04.3 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2022-02-04 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) ## bookdown 0.24 2022-02-04 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) ## curl 4.3 2019-12-02 [1] RSPM (R 4.0.3) ## desc 1.2.0 2018-05-01 [1] RSPM (R 4.0.3) ## devtools 2.3.2 2020-09-18 [1] RSPM (R 4.0.3) ## digest 0.6.25 2020-02-23 [1] RSPM (R 4.0.0) ## ellipsis 0.3.1 2020-05-15 [1] RSPM (R 4.0.3) ## evaluate 0.14 2019-05-28 [1] RSPM (R 4.0.3) ## fansi 0.4.1 2020-01-08 [1] RSPM (R 4.0.0) ## fs 1.5.0 2020-07-31 [1] RSPM (R 4.0.3) ## glue 1.6.1 2022-01-22 [1] CRAN (R 4.0.2) ## highr 0.8 2019-03-20 [1] RSPM (R 4.0.3) ## hms 0.5.3 2020-01-08 [1] RSPM (R 4.0.0) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## httr 1.4.2 2020-07-20 [1] RSPM (R 4.0.3) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) ## knitr 1.33 2022-02-04 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr * 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) ## ottr 0.1.2 2022-02-04 [1] Github (jhudsl/ottr@b6da73c) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) ## pkgload 1.1.0 2020-05-29 [1] RSPM (R 4.0.3) ## prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.0.3) ## processx 3.4.4 2020-09-03 [1] RSPM (R 4.0.2) ## ps 1.3.4 2020-08-11 [1] RSPM (R 4.0.2) ## purrr 0.3.4 2020-04-17 [1] RSPM (R 4.0.3) ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) ## rlang 0.4.10 2022-02-04 [1] Github (r-lib/rlang@f0c9be5) ## rmarkdown 2.10 2022-02-04 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) ## testthat 3.0.1 2022-02-04 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) ## usethis 2.1.5.9000 2022-02-04 [1] Github (r-lib/usethis@57b109a) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) ## xfun 0.26 2022-02-04 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library References "],["about-the-authors.html", "About the Authors", " About the Authors These credits are based on our course contributors table guidelines.     Credits Names Pedagogy Lead Content Instructor(s) FirstName LastName Lecturer(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved Delivered the course in some way - video or audio Content Author(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved If any other authors besides lead instructor Content Contributor(s) (include section name/link in parentheses) - make new line if more than one section involved Wrote less than a chapter Content Editor(s)/Reviewer(s) Checked your content Content Director(s) Helped guide the content direction Content Consultants (include chapter name/link in parentheses or word “General”) - make new line if more than one chapter involved Gave high level advice on content Acknowledgments Gave small assistance to content but not to the level of consulting Production Content Publisher(s) Helped with publishing platform Content Publishing Reviewer(s) Reviewed overall content and aesthetics on publishing platform Technical Course Publishing Engineer(s) Helped with the code for the technical aspects related to the specific course generation Template Publishing Engineers Candace Savonen, Carrie Wright Publishing Maintenance Engineer Candace Savonen Technical Publishing Stylists Carrie Wright, Candace Savonen Package Developers (ottr) John Muschelli, Candace Savonen, Carrie Wright Art and Design Illustrator(s) Created graphics for the course Figure Artist(s) Created figures/plots for course Videographer(s) Filmed videos Videography Editor(s) Edited film Audiographer(s) Recorded audio Audiography Editor(s) Edited audio recordings Funding Funder(s) Institution/individual who funded course including grant number Funding Staff Staff members who help with funding   ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.0.2 (2020-06-22) ## os Ubuntu 20.04.3 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2022-02-04 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) ## bookdown 0.24 2022-02-04 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) ## desc 1.2.0 2018-05-01 [1] RSPM (R 4.0.3) ## devtools 2.3.2 2020-09-18 [1] RSPM (R 4.0.3) ## digest 0.6.25 2020-02-23 [1] RSPM (R 4.0.0) ## ellipsis 0.3.1 2020-05-15 [1] RSPM (R 4.0.3) ## evaluate 0.14 2019-05-28 [1] RSPM (R 4.0.3) ## fansi 0.4.1 2020-01-08 [1] RSPM (R 4.0.0) ## fs 1.5.0 2020-07-31 [1] RSPM (R 4.0.3) ## glue 1.6.1 2022-01-22 [1] CRAN (R 4.0.2) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) ## knitr 1.33 2022-02-04 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgload 1.1.0 2020-05-29 [1] RSPM (R 4.0.3) ## prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.0.3) ## processx 3.4.4 2020-09-03 [1] RSPM (R 4.0.2) ## ps 1.3.4 2020-08-11 [1] RSPM (R 4.0.2) ## purrr 0.3.4 2020-04-17 [1] RSPM (R 4.0.3) ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) ## rlang 0.4.10 2022-02-04 [1] Github (r-lib/rlang@f0c9be5) ## rmarkdown 2.10 2022-02-04 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) ## testthat 3.0.1 2022-02-04 [1] Github (R-lib/testthat@e99155a) ## usethis 2.1.5.9000 2022-02-04 [1] Github (r-lib/usethis@57b109a) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) ## xfun 0.26 2022-02-04 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library "],["references.html", "References", " References "],["404.html", "Page not found", " Page not found The page you requested cannot be found (perhaps it was moved or renamed). You may want to try searching to find the page's new location, or use the table of contents to find the page you are looking for. "]] diff --git a/docs/topic-of-section.html b/docs/topic-of-section.html index e999abc5..7f90cd16 100644 --- a/docs/topic-of-section.html +++ b/docs/topic-of-section.html @@ -348,13 +348,13 @@

3.2 Print out session info

## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2022-02-03 +## date 2022-02-04 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) -## bookdown 0.24 2022-02-03 [1] Github (rstudio/bookdown@88bc4ea) +## bookdown 0.24 2022-02-04 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) @@ -372,11 +372,11 @@

3.2 Print out session info

## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## httr 1.4.2 2020-07-20 [1] RSPM (R 4.0.3) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) -## knitr 1.33 2022-02-03 [1] Github (yihui/knitr@a1052d1) +## knitr 1.33 2022-02-04 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr * 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) -## ottr 0.1.2 2022-02-03 [1] Github (jhudsl/ottr@eedbe3e) +## ottr 0.1.2 2022-02-04 [1] Github (jhudsl/ottr@b6da73c) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) @@ -388,18 +388,18 @@

3.2 Print out session info

## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) -## rlang 0.4.10 2022-02-03 [1] Github (r-lib/rlang@f0c9be5) -## rmarkdown 2.10 2022-02-03 [1] Github (rstudio/rmarkdown@02d3c25) +## rlang 0.4.10 2022-02-04 [1] Github (r-lib/rlang@f0c9be5) +## rmarkdown 2.10 2022-02-04 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) -## testthat 3.0.1 2022-02-03 [1] Github (R-lib/testthat@e99155a) +## testthat 3.0.1 2022-02-04 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) -## usethis 2.1.5.9000 2022-02-03 [1] Github (r-lib/usethis@57b109a) +## usethis 2.1.5.9000 2022-02-04 [1] Github (r-lib/usethis@57b109a) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) -## xfun 0.26 2022-02-03 [1] Github (yihui/xfun@74c2a66) +## xfun 0.26 2022-02-04 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library