Skip to content

io_lib-1-14-15

Compare
Choose a tag to compare
@jkbonfield jkbonfield released this 06 Dec 11:38
· 5 commits to master since this release

This is a bug fix release.

Updates:

  • Switched to using GitHub actions for CI.

  • Updated htscodecs submodule to the latest version (1.3.0).
    Also fixed function names used within it.

  • Minor code tidyups to remove compiler warnings.

Bug fixes:

  • MacOS testing fix to cope with sed failing on long lines.

  • Fixed bam_aux_skip B array handling of signed values.

  • Improved detection of unsorted mode, which was causing a drastic
    slow-down when encoding unsorted data.

  • Fixed a CRAM reference multi-threading bug when fetching from a
    fasta file.

  • Fixed bam_aux_f decoding of floats.