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GBWTGraph v0.5
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@jltsiren jltsiren released this 16 Jan 02:21
· 312 commits to master since this release
v0.5
01ce5d9

Major improvements to GFA parsing:

  • Multi-pass algorithm that validates the input before starting GBWT construction.
  • Segment names are automatically translated into integer ids if necessary.
  • Long segments are broken down into smaller nodes (at most 1024 bp by default) if necessary.
  • Segment-to-node translation table is written to basename.trans.
  • GBWT metadata can be generated by parsing path names.
  • Support for proposed W-lines.
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