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GBWTGraph v0.8
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@jltsiren jltsiren released this 21 Jan 16:34
· 173 commits to master since this release
v0.8
dd2e7b9
  • GBWTGraph implements more libhandlegraph interfaces:
    • PathHandleGraph: Reference paths corresponding to sample name _gbwt_ref are reported as named paths.
    • NamedNodeBackTranslation: Node chopping + node id / segment name translation for GFA.
    • CachedGBWTGraph is only a HandleGraph.
  • Multithreaded GFA (de)compression in gfa2gbwt and with gfa_to_gbwt() / gbwt_to_gfa().
    • Faster and more memory-efficient compression, faster decompression.
    • Path order in the GBWT and path/edge order in the decompressed GFA file is different from the old algorithms.
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