From ef4d15e1da0f5823bf805dc2a0938c882c7ef650 Mon Sep 17 00:00:00 2001
From: Sebastian Karcher <karcher@u.northwestern.edu>
Date: Thu, 17 Sep 2020 23:58:01 -0400
Subject: [PATCH] Create independent EMBO Press

link/relink existing EMBO styles
---
 aims-press.csl                          |   2 +-
 dependent/embo-reports.csl              |  16 +++
 dependent/molecular-systems-biology.csl |   5 +-
 dependent/the-embo-journal.csl          |  17 ++++
 the-embo-journal.csl => embo-press.csl  |  64 ++++++------
 embo-reports.csl                        | 127 ------------------------
 6 files changed, 69 insertions(+), 162 deletions(-)
 create mode 100644 dependent/embo-reports.csl
 create mode 100644 dependent/the-embo-journal.csl
 rename the-embo-journal.csl => embo-press.csl (77%)
 delete mode 100644 embo-reports.csl

diff --git a/aims-press.csl b/aims-press.csl
index 7259faa4ed26..a3cd8d76f15b 100644
--- a/aims-press.csl
+++ b/aims-press.csl
@@ -4,7 +4,7 @@
     <title>AIMS Press</title>
     <id>http://www.zotero.org/styles/aims-press</id>
     <link href="http://www.zotero.org/styles/aims-press" rel="self"/>
-    <link href="http://www.zotero.org/styles/embo-reports" rel="template"/>
+    <link href="http://www.zotero.org/styles/embo-press" rel="template"/>
     <link href="https://www.aimspress.com/news/140.html" rel="documentation"/>
     <author>
       <name>Patrick O'Brien, PhD</name>
diff --git a/dependent/embo-reports.csl b/dependent/embo-reports.csl
new file mode 100644
index 000000000000..45ddb2b39e16
--- /dev/null
+++ b/dependent/embo-reports.csl
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="utf-8"?>
+<style xmlns="http://purl.org/net/xbiblio/csl" version="1.0" default-locale="en-GB">
+  <info>
+    <title>EMBO reports</title>
+    <id>http://www.zotero.org/styles/embo-reports</id>
+    <link href="http://www.zotero.org/styles/embo-reports" rel="self"/>
+    <link href="http://www.zotero.org/styles/embo-press" rel="independent-parent"/>
+    <link href="https://www.embopress.org/page/journal/14693178/authorguide#referencesformat" rel="documentation"/>
+    <category citation-format="author-date"/>
+    <category field="biology"/>
+    <issn>1469-221X</issn>
+    <eissn>1469-3178</eissn>
+    <updated>2012-09-27T22:06:38+00:00</updated>
+    <rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
+  </info>
+</style>
diff --git a/dependent/molecular-systems-biology.csl b/dependent/molecular-systems-biology.csl
index 8c2447180f07..39b32ddd2644 100644
--- a/dependent/molecular-systems-biology.csl
+++ b/dependent/molecular-systems-biology.csl
@@ -1,12 +1,11 @@
 <?xml version="1.0" encoding="utf-8"?>
 <style xmlns="http://purl.org/net/xbiblio/csl" version="1.0" default-locale="en-GB">
-  <!-- Generated with https://github.com/citation-style-language/utilities/tree/master/generate_dependent_styles/data/npg -->
   <info>
     <title>Molecular Systems Biology</title>
     <id>http://www.zotero.org/styles/molecular-systems-biology</id>
     <link href="http://www.zotero.org/styles/molecular-systems-biology" rel="self"/>
-    <link href="http://www.zotero.org/styles/the-embo-journal" rel="independent-parent"/>
-    <link href="http://msb.embopress.org/authorguide#a3.4.5" rel="documentation"/>
+    <link href="http://www.zotero.org/styles/embo-press" rel="independent-parent"/>
+    <link href="https://www.embopress.org/page/journal/17444292/authorguide#referencesformat" rel="documentation"/>
     <category citation-format="author-date"/>
     <category field="biology"/>
     <category field="medicine"/>
diff --git a/dependent/the-embo-journal.csl b/dependent/the-embo-journal.csl
new file mode 100644
index 000000000000..79f579e1d6bf
--- /dev/null
+++ b/dependent/the-embo-journal.csl
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="utf-8"?>
+<style xmlns="http://purl.org/net/xbiblio/csl" version="1.0" default-locale="en-GB">
+  <info>
+    <title>The EMBO Journal</title>
+    <id>http://www.zotero.org/styles/the-embo-journal</id>
+    <link href="http://www.zotero.org/styles/the-embo-journal" rel="self"/>
+    <link href="http://www.zotero.org/styles/embo-press" rel="independent-parent"/>
+    <link href="https://www.embopress.org/page/journal/14602075/authorguide#referencesformat" rel="documentation"/>
+    <category citation-format="author-date"/>
+    <category field="biology"/>
+    <issn>0261-4189</issn>
+    <eissn>1460-2075</eissn>
+    <summary>Style for EMBO Journal</summary>
+    <updated>2012-09-27T22:06:38+00:00</updated>
+    <rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
+  </info>
+</style>
diff --git a/the-embo-journal.csl b/embo-press.csl
similarity index 77%
rename from the-embo-journal.csl
rename to embo-press.csl
index b45128944795..c64be85041b1 100644
--- a/the-embo-journal.csl
+++ b/embo-press.csl
@@ -1,10 +1,10 @@
 <?xml version="1.0" encoding="utf-8"?>
 <style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="sort-only" default-locale="en-GB">
   <info>
-    <title>The EMBO Journal</title>
-    <id>http://www.zotero.org/styles/the-embo-journal</id>
-    <link href="http://www.zotero.org/styles/the-embo-journal" rel="self"/>
-    <link href="http://www.nature.com/emboj/about/authors.html#a3.3.5" rel="documentation"/>
+    <title>EMBO Press</title>
+    <id>http://www.zotero.org/styles/embo-press</id>
+    <link href="http://www.zotero.org/styles/embo-press" rel="self"/>
+    <link href="https://www.embopress.org/page/journal/14602075/authorguide#referencesformat" rel="documentation"/>
     <author>
       <name>Julian Onions</name>
       <email>julian.onions@gmail.com</email>
@@ -14,9 +14,7 @@
     </contributor>
     <category citation-format="author-date"/>
     <category field="biology"/>
-    <issn>0261-4189</issn>
-    <eissn>1460-2075</eissn>
-    <summary>Style for EMBO Journal</summary>
+    <summary>Style for EMBO Press journals and reports</summary>
     <updated>2012-09-27T22:06:38+00:00</updated>
     <rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
   </info>
@@ -35,6 +33,7 @@
     <names variable="author">
       <name name-as-sort-order="all" and="symbol" sort-separator=" " initialize-with="" delimiter=", " delimiter-precedes-last="never"/>
       <label form="short" prefix=" "/>
+      <et-al font-style="italic"/>
       <substitute>
         <names variable="editor"/>
         <text variable="title"/>
@@ -53,20 +52,28 @@
     </names>
   </macro>
   <macro name="access">
-    <choose>
-      <if variable="URL">
-        <text value="Available at:" suffix=" "/>
-        <text variable="URL"/>
-        <group prefix=" [" suffix="]">
-          <text term="accessed" text-case="capitalize-first" suffix=" "/>
-          <date variable="accessed">
-            <date-part name="month" suffix=" "/>
-            <date-part name="day" suffix=", "/>
-            <date-part name="year"/>
-          </date>
-        </group>
-      </if>
-    </choose>
+    <group delimiter=" ">
+      <choose>
+        <if type="article dataset" match="any">
+          <choose>
+            <if variable="DOI">
+              <text variable="DOI" prefix="doi:"/>
+            </if>
+            <else-if variable="URL">
+              <text variable="URL" prefix="(" suffix=")"/>
+            </else-if>
+          </choose>
+          <choose>
+            <if type="article">
+              <text value="[PREPRINT]"/>
+            </if>
+            <else>
+              <text value="[DATASET]"/>
+            </else>
+          </choose>
+        </if>
+      </choose>
+    </group>
   </macro>
   <macro name="title">
     <text variable="title"/>
@@ -104,7 +111,7 @@
       </group>
     </layout>
   </citation>
-  <bibliography hanging-indent="true" et-al-min="21" et-al-use-first="20">
+  <bibliography hanging-indent="true" et-al-min="11" et-al-use-first="10">
     <sort>
       <key macro="author"/>
       <key variable="issued"/>
@@ -138,17 +145,12 @@
         </else-if>
         <else>
           <text macro="title" prefix=" " suffix="."/>
-          <group prefix=" ">
+          <group prefix=" " delimiter=": ">
             <group delimiter=" ">
-              <text variable="container-title" form="short" font-style="italic"/>
-              <text variable="volume" font-weight="bold"/>
+              <text variable="container-title" form="short" font-style="italic" strip-periods="true"/>
+              <text variable="volume"/>
             </group>
-            <choose>
-              <if variable="page volume" match="any">
-                <text value=":" font-weight="bold"/>
-              </if>
-            </choose>
-            <text variable="page" prefix=" "/>
+            <text variable="page"/>
           </group>
         </else>
       </choose>
diff --git a/embo-reports.csl b/embo-reports.csl
deleted file mode 100644
index 16a8000a90fa..000000000000
--- a/embo-reports.csl
+++ /dev/null
@@ -1,127 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="sort-only" page-range-format="expanded" default-locale="en-GB">
-  <info>
-    <title>EMBO reports</title>
-    <id>http://www.zotero.org/styles/embo-reports</id>
-    <link href="http://www.zotero.org/styles/embo-reports" rel="self"/>
-    <link href="http://www.zotero.org/styles/journal-of-alzheimers-disease" rel="template"/>
-    <link href="http://www.nature.com/embor/about/authors.html#refformat" rel="documentation"/>
-    <author>
-      <name>Sebastian Karcher</name>
-    </author>
-    <category citation-format="numeric"/>
-    <category field="biology"/>
-    <issn>1469-221X</issn>
-    <eissn>1469-3178</eissn>
-    <updated>2012-09-27T22:06:38+00:00</updated>
-    <rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
-  </info>
-  <macro name="author">
-    <names variable="author">
-      <name initialize-with="" delimiter=", " name-as-sort-order="all" sort-separator=" " delimiter-precedes-last="always"/>
-      <label form="short" prefix=", "/>
-      <substitute>
-        <names variable="editor"/>
-        <names variable="translator"/>
-      </substitute>
-    </names>
-  </macro>
-  <macro name="editor">
-    <names variable="editor">
-      <name initialize-with="" delimiter=", " name-as-sort-order="all" sort-separator=" " delimiter-precedes-last="always"/>
-      <label form="short" prefix=" (" suffix=")"/>
-    </names>
-  </macro>
-  <macro name="title">
-    <choose>
-      <if type="bill book graphic legal_case legislation motion_picture report song" match="any">
-        <text variable="title" font-style="italic"/>
-      </if>
-      <else>
-        <text variable="title"/>
-      </else>
-    </choose>
-  </macro>
-  <macro name="publisher">
-    <text variable="publisher"/>
-    <text variable="publisher-place" prefix=", "/>
-  </macro>
-  <macro name="page">
-    <choose>
-      <if type="chapter paper-conference" match="any">
-        <group>
-          <label variable="page" form="short" suffix=" " strip-periods="true"/>
-          <text variable="page"/>
-        </group>
-      </if>
-      <else>
-        <text variable="page"/>
-      </else>
-    </choose>
-  </macro>
-  <citation collapse="citation-number">
-    <sort>
-      <key variable="citation-number"/>
-    </sort>
-    <layout prefix="[" suffix="]" delimiter=",">
-      <text variable="citation-number"/>
-    </layout>
-  </citation>
-  <bibliography entry-spacing="0" second-field-align="flush" et-al-min="11" et-al-use-first="10">
-    <layout suffix=".">
-      <text variable="citation-number" suffix=". "/>
-      <choose>
-        <if type="bill book graphic legal_case legislation motion_picture report song" match="any">
-          <text macro="author"/>
-          <date variable="issued" prefix=" (" suffix=")">
-            <date-part name="year"/>
-          </date>
-          <group delimiter=". " prefix=" ">
-            <text macro="title"/>
-            <text macro="publisher"/>
-          </group>
-        </if>
-        <else-if type="chapter paper-conference" match="any">
-          <text macro="author"/>
-          <date variable="issued" prefix=" (" suffix=")">
-            <date-part name="year"/>
-          </date>
-          <text macro="title" prefix=" " suffix="."/>
-          <text term="in" text-case="capitalize-first" prefix=" "/>
-          <text macro="editor" prefix=" "/>
-          <text variable="container-title" font-style="italic" prefix=", "/>
-          <text macro="page" prefix=" "/>
-          <text macro="publisher" prefix=". "/>
-        </else-if>
-        <else-if type="webpage">
-          <group delimiter=", ">
-            <text variable="container-title"/>
-            <text macro="title"/>
-            <date variable="issued" prefix="Last updated ">
-              <date-part name="month" suffix=" "/>
-              <date-part name="day" suffix=", "/>
-              <date-part name="year"/>
-            </date>
-            <date variable="issued" prefix="Accessed on ">
-              <date-part name="month" suffix=" "/>
-              <date-part name="day" suffix=", "/>
-              <date-part name="year"/>
-            </date>
-          </group>
-        </else-if>
-        <else>
-          <group delimiter=" ">
-            <text macro="author"/>
-            <date variable="issued" prefix="(" suffix=")">
-              <date-part name="year"/>
-            </date>
-            <text macro="title" suffix="."/>
-            <text variable="container-title" font-style="italic" form="short" strip-periods="true"/>
-            <text variable="volume" font-weight="bold" suffix=":"/>
-            <text macro="page"/>
-          </group>
-        </else>
-      </choose>
-    </layout>
-  </bibliography>
-</style>