From bb3117c77d89b5c24c5e8a9f98ac468498b9704c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jonas=20F=C3=B6rster?= Date: Thu, 24 Oct 2019 22:07:39 +0200 Subject: [PATCH] - upgrade website --- docs/404.html | 2 +- docs/LICENSE-text.html | 2 +- docs/articles/CoRC.html | 2 +- docs/articles/entity_management.html | 2 +- docs/articles/examples.html | 4 +- .../htmlwidgets.js | 72 +++++++++++-------- docs/articles/index.html | 2 +- docs/articles/issues.html | 2 +- docs/articles/model_building.html | 2 +- docs/articles/task_management.html | 2 +- docs/authors.html | 2 +- docs/index.html | 2 +- docs/news/index.html | 10 ++- docs/reference/CoRC-package.html | 2 +- docs/reference/addExperiments.html | 2 +- docs/reference/addOptimizationParameter.html | 2 +- .../addParameterEstimationParameter.html | 2 +- docs/reference/applyInitialState.html | 2 +- docs/reference/autoplot.copasi_ts.html | 2 +- .../clearCustomKineticFunctions.html | 2 +- docs/reference/clearExperiments.html | 2 +- .../clearOptimizationParameters.html | 2 +- .../clearParameterEstimationParameters.html | 2 +- docs/reference/clearValidations.html | 2 +- docs/reference/compileModel.html | 2 +- docs/reference/convertToIrreversible.html | 2 +- docs/reference/defineExperiments.html | 2 +- .../defineOptimizationParameter.html | 2 +- .../defineParameterEstimationParameter.html | 2 +- docs/reference/deleteCompartment.html | 2 +- docs/reference/deleteEvent.html | 2 +- docs/reference/deleteGlobalQuantity.html | 2 +- docs/reference/deleteKineticFunction.html | 2 +- docs/reference/deleteReaction.html | 2 +- docs/reference/deleteSpecies.html | 2 +- docs/reference/entity_finders.html | 2 +- docs/reference/getAreaUnit.html | 2 +- docs/reference/getCompartmentReferences.html | 2 +- docs/reference/getCompartments.html | 2 +- docs/reference/getCopasi.html | 2 +- docs/reference/getCurrentModel.html | 2 +- docs/reference/getEvents.html | 2 +- docs/reference/getGlobalQuantities.html | 2 +- .../getGlobalQuantityReferences.html | 2 +- docs/reference/getInitialTime.html | 2 +- docs/reference/getInitialValue.html | 2 +- docs/reference/getLengthUnit.html | 2 +- .../getLinearNoiseApproximationSettings.html | 2 +- docs/reference/getLinkMatrix.html | 2 +- docs/reference/getLoadedModels.html | 2 +- .../getMetabolicControlAnalysisSettings.html | 2 +- docs/reference/getModelName.html | 2 +- docs/reference/getOptimizationSettings.html | 2 +- .../getParameterEstimationSettings.html | 2 +- docs/reference/getParameterReferences.html | 2 +- docs/reference/getParameters.html | 2 +- docs/reference/getQuantityUnit.html | 2 +- docs/reference/getReactionMappings.html | 2 +- docs/reference/getReactionReferences.html | 2 +- docs/reference/getReactions.html | 2 +- .../getReducedStoichiometryMatrix.html | 2 +- docs/reference/getSpecies.html | 2 +- docs/reference/getSpeciesReferences.html | 2 +- docs/reference/getSteadyStateSettings.html | 2 +- docs/reference/getStoichiometryMatrix.html | 2 +- docs/reference/getTimeCourseSettings.html | 2 +- docs/reference/getTimeUnit.html | 2 +- docs/reference/getValidReactionFunctions.html | 2 +- docs/reference/getValue.html | 2 +- docs/reference/getVersion.html | 2 +- docs/reference/getVolumeUnit.html | 2 +- docs/reference/index.html | 2 +- docs/reference/loadExamples.html | 2 +- docs/reference/loadModel.html | 2 +- docs/reference/loadModelFromString.html | 2 +- docs/reference/loadSBML.html | 2 +- docs/reference/loadSBMLFromString.html | 2 +- docs/reference/newCompartment.html | 2 +- docs/reference/newEvent.html | 2 +- docs/reference/newGlobalQuantity.html | 2 +- docs/reference/newKineticFunction.html | 2 +- docs/reference/newModel.html | 2 +- docs/reference/newReaction.html | 2 +- docs/reference/newSpecies.html | 2 +- docs/reference/openCopasi.html | 2 +- docs/reference/regex.html | 2 +- .../runLinearNoiseApproximation.html | 2 +- .../runMetabolicControlAnalysis.html | 2 +- docs/reference/runOptimization.html | 2 +- docs/reference/runParameterEstimation.html | 2 +- docs/reference/runSigmaPoint.html | 2 +- docs/reference/runSteadyState.html | 2 +- docs/reference/runTimeCourse.html | 2 +- docs/reference/saveModel.html | 2 +- docs/reference/saveModelToString.html | 2 +- docs/reference/saveSBML.html | 2 +- docs/reference/saveSBMLToString.html | 2 +- docs/reference/setAreaUnit.html | 2 +- docs/reference/setCompartments.html | 2 +- docs/reference/setCurrentModel.html | 2 +- docs/reference/setEvents.html | 2 +- docs/reference/setGlobalQuantities.html | 2 +- docs/reference/setInitialTime.html | 2 +- docs/reference/setLengthUnit.html | 2 +- .../setLinearNoiseApproximationSettings.html | 2 +- .../setMetabolicControlAnalysisSettings.html | 2 +- docs/reference/setModelName.html | 2 +- docs/reference/setOptimizationSettings.html | 2 +- .../setParameterEstimationSettings.html | 2 +- docs/reference/setParameters.html | 2 +- docs/reference/setQuantityUnit.html | 2 +- docs/reference/setReactionFunction.html | 2 +- docs/reference/setReactionMappings.html | 2 +- docs/reference/setReactions.html | 2 +- docs/reference/setSpecies.html | 2 +- docs/reference/setSteadyStateSettings.html | 2 +- docs/reference/setTimeCourseSettings.html | 2 +- docs/reference/setTimeUnit.html | 2 +- docs/reference/setVolumeUnit.html | 2 +- docs/reference/unloadAllModels.html | 2 +- docs/reference/unloadModel.html | 2 +- docs/reference/updateInitialState.html | 2 +- 122 files changed, 172 insertions(+), 152 deletions(-) rename docs/articles/examples_files/{htmlwidgets-1.5 => htmlwidgets-1.5.1}/htmlwidgets.js (94%) diff --git a/docs/404.html b/docs/404.html index fcf58cdb..3464983d 100644 --- a/docs/404.html +++ b/docs/404.html @@ -82,7 +82,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 3ba64688..bcde7450 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -82,7 +82,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/articles/CoRC.html b/docs/articles/CoRC.html index 250b06b1..2db91f99 100644 --- a/docs/articles/CoRC.html +++ b/docs/articles/CoRC.html @@ -40,7 +40,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/articles/entity_management.html b/docs/articles/entity_management.html index 850d1900..1e6b120a 100644 --- a/docs/articles/entity_management.html +++ b/docs/articles/entity_management.html @@ -40,7 +40,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/articles/examples.html b/docs/articles/examples.html index 940f805f..528390d9 100644 --- a/docs/articles/examples.html +++ b/docs/articles/examples.html @@ -40,7 +40,7 @@ CoRC - 0.6.0 + 0.6.1 @@ -109,7 +109,7 @@ - +
diff --git a/docs/articles/examples_files/htmlwidgets-1.5/htmlwidgets.js b/docs/articles/examples_files/htmlwidgets-1.5.1/htmlwidgets.js similarity index 94% rename from docs/articles/examples_files/htmlwidgets-1.5/htmlwidgets.js rename to docs/articles/examples_files/htmlwidgets-1.5.1/htmlwidgets.js index 64c7e8d7..6f3d672d 100644 --- a/docs/articles/examples_files/htmlwidgets-1.5/htmlwidgets.js +++ b/docs/articles/examples_files/htmlwidgets-1.5.1/htmlwidgets.js @@ -659,44 +659,56 @@ invokePostRenderHandlers(); } - // Wait until after the document has loaded to render the widgets. - if (shinyMode && window.jQuery) { - /* - / Shiny 1.4.0 bumps jQuery from 1.x to 3.x, which means jQuery's - / on-ready handler (i.e., $(fn)) is now asyncronous (i.e., it now - / really means $(setTimeout(fn)). https://jquery.com/upgrade-guide/3.0/#breaking-change-document-ready-handlers-are-now-asynchronous - / - / In order to ensure the order of execution of on-ready handlers - / remains consistent with how it's been in the past, a static render - / in Shiny is now scheduled via $(). - / - / This is not a long term solution: it just preserves the current order - / of execution. Part of that ordering is to ensure initShiny executes - / _after_ staticRender, which is both right and wrong: - / * It's wrong because, when initShiny executes, it registers methods - / like Shiny.onInputChange that widget authors would expect to be available - / during a staticRender. - / * It's also 'right' because initShiny currently (as of v1.4.0) wants - / to execute after user code so that it can bind to any dynamically - / created elements. - / - / A longer term solution might be to make changes to Shiny so that - / these methods are available before the binding takes place, and then - / the ordering would be: register methods -> static render -> bind. - */ - window.jQuery(function() { + + function has_jQuery3() { + if (!window.jQuery) { + return false; + } + var $version = window.jQuery.fn.jquery; + var $major_version = parseInt($version.split(".")[0]); + return $major_version >= 3; + } + + /* + / Shiny 1.4 bumped jQuery from 1.x to 3.x which means jQuery's + / on-ready handler (i.e., $(fn)) is now asyncronous (i.e., it now + / really means $(setTimeout(fn)). + / https://jquery.com/upgrade-guide/3.0/#breaking-change-document-ready-handlers-are-now-asynchronous + / + / Since Shiny uses $() to schedule initShiny, shiny>=1.4 calls initShiny + / one tick later than it did before, which means staticRender() is + / called renderValue() earlier than (advanced) widget authors might be expecting. + / https://github.com/rstudio/shiny/issues/2630 + / + / For a concrete example, leaflet has some methods (e.g., updateBounds) + / which reference Shiny methods registered in initShiny (e.g., setInputValue). + / Since leaflet is privy to this life-cycle, it knows to use setTimeout() to + / delay execution of those methods (until Shiny methods are ready) + / https://github.com/rstudio/leaflet/blob/18ec981/javascript/src/index.js#L266-L268 + / + / Ideally widget authors wouldn't need to use this setTimeout() hack that + / leaflet uses to call Shiny methods on a staticRender(). In the long run, + / the logic initShiny should be broken up so that method registration happens + / right away, but binding happens later. + */ + function maybeStaticRenderLater() { + if (shinyMode && has_jQuery3()) { + window.jQuery(window.HTMLWidgets.staticRender); + } else { window.HTMLWidgets.staticRender(); - }); - } else if (document.addEventListener) { + } + } + + if (document.addEventListener) { document.addEventListener("DOMContentLoaded", function() { document.removeEventListener("DOMContentLoaded", arguments.callee, false); - window.HTMLWidgets.staticRender(); + maybeStaticRenderLater(); }, false); } else if (document.attachEvent) { document.attachEvent("onreadystatechange", function() { if (document.readyState === "complete") { document.detachEvent("onreadystatechange", arguments.callee); - window.HTMLWidgets.staticRender(); + maybeStaticRenderLater(); } }); } diff --git a/docs/articles/index.html b/docs/articles/index.html index b5c0e75d..da45bf9b 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -82,7 +82,7 @@ CoRC - 0.6.0 + 0.6.1
diff --git a/docs/articles/issues.html b/docs/articles/issues.html index a078934a..1fa44cc2 100644 --- a/docs/articles/issues.html +++ b/docs/articles/issues.html @@ -40,7 +40,7 @@ CoRC - 0.6.0 + 0.6.1
diff --git a/docs/articles/model_building.html b/docs/articles/model_building.html index f0be624f..88841d63 100644 --- a/docs/articles/model_building.html +++ b/docs/articles/model_building.html @@ -40,7 +40,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/articles/task_management.html b/docs/articles/task_management.html index 8d557f17..a8006896 100644 --- a/docs/articles/task_management.html +++ b/docs/articles/task_management.html @@ -40,7 +40,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/authors.html b/docs/authors.html index 4e025454..bfbcb72e 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -82,7 +82,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/index.html b/docs/index.html index 5ca4dc86..75d747bc 100644 --- a/docs/index.html +++ b/docs/index.html @@ -40,7 +40,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/news/index.html b/docs/news/index.html index 9877226f..c1fd6724 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -82,7 +82,7 @@ CoRC - 0.6.0 + 0.6.1 @@ -158,6 +158,13 @@

Changelog

Source: NEWS.md +
+

+CoRC 0.6.1 (2019-10-24)

+ +

CoRC 0.6.0 (2019-10-06)

@@ -252,6 +259,7 @@

Contents

    +
  • 0.6.1
  • 0.6.0
  • 0.5.0
  • 0.4.0
    • diff --git a/docs/reference/CoRC-package.html b/docs/reference/CoRC-package.html index 54ef5d45..f80a4ec2 100644 --- a/docs/reference/CoRC-package.html +++ b/docs/reference/CoRC-package.html @@ -86,7 +86,7 @@ CoRC - 0.6.0 + 0.6.1
diff --git a/docs/reference/addExperiments.html b/docs/reference/addExperiments.html index f4c3b078..18d169e0 100644 --- a/docs/reference/addExperiments.html +++ b/docs/reference/addExperiments.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1

diff --git a/docs/reference/addOptimizationParameter.html b/docs/reference/addOptimizationParameter.html index 795a10d2..fe111ed8 100644 --- a/docs/reference/addOptimizationParameter.html +++ b/docs/reference/addOptimizationParameter.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/addParameterEstimationParameter.html b/docs/reference/addParameterEstimationParameter.html index 6b3e2cef..a425c121 100644 --- a/docs/reference/addParameterEstimationParameter.html +++ b/docs/reference/addParameterEstimationParameter.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/applyInitialState.html b/docs/reference/applyInitialState.html index 94be198c..1b095ea5 100644 --- a/docs/reference/applyInitialState.html +++ b/docs/reference/applyInitialState.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/autoplot.copasi_ts.html b/docs/reference/autoplot.copasi_ts.html index 7e450ead..f85d47ae 100644 --- a/docs/reference/autoplot.copasi_ts.html +++ b/docs/reference/autoplot.copasi_ts.html @@ -84,7 +84,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/clearCustomKineticFunctions.html b/docs/reference/clearCustomKineticFunctions.html index 0dfcee48..9853b4f8 100644 --- a/docs/reference/clearCustomKineticFunctions.html +++ b/docs/reference/clearCustomKineticFunctions.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/clearExperiments.html b/docs/reference/clearExperiments.html index c676d3db..1d1bd7a2 100644 --- a/docs/reference/clearExperiments.html +++ b/docs/reference/clearExperiments.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/clearOptimizationParameters.html b/docs/reference/clearOptimizationParameters.html index 61a4703a..78c486c0 100644 --- a/docs/reference/clearOptimizationParameters.html +++ b/docs/reference/clearOptimizationParameters.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/clearParameterEstimationParameters.html b/docs/reference/clearParameterEstimationParameters.html index 2a863ea4..ff511a36 100644 --- a/docs/reference/clearParameterEstimationParameters.html +++ b/docs/reference/clearParameterEstimationParameters.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/clearValidations.html b/docs/reference/clearValidations.html index fb7117ea..6e9eda0c 100644 --- a/docs/reference/clearValidations.html +++ b/docs/reference/clearValidations.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/compileModel.html b/docs/reference/compileModel.html index f5c319ea..59d2466b 100644 --- a/docs/reference/compileModel.html +++ b/docs/reference/compileModel.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/convertToIrreversible.html b/docs/reference/convertToIrreversible.html index 79530165..dbb06721 100644 --- a/docs/reference/convertToIrreversible.html +++ b/docs/reference/convertToIrreversible.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/defineExperiments.html b/docs/reference/defineExperiments.html index b37ffcd8..444eadd7 100644 --- a/docs/reference/defineExperiments.html +++ b/docs/reference/defineExperiments.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/defineOptimizationParameter.html b/docs/reference/defineOptimizationParameter.html index 6104dc3b..4297506c 100644 --- a/docs/reference/defineOptimizationParameter.html +++ b/docs/reference/defineOptimizationParameter.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/defineParameterEstimationParameter.html b/docs/reference/defineParameterEstimationParameter.html index 51c25046..278b64b4 100644 --- a/docs/reference/defineParameterEstimationParameter.html +++ b/docs/reference/defineParameterEstimationParameter.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/deleteCompartment.html b/docs/reference/deleteCompartment.html index 2d559ccd..5775cc4a 100644 --- a/docs/reference/deleteCompartment.html +++ b/docs/reference/deleteCompartment.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/deleteEvent.html b/docs/reference/deleteEvent.html index 9a861415..6c12afe0 100644 --- a/docs/reference/deleteEvent.html +++ b/docs/reference/deleteEvent.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/deleteGlobalQuantity.html b/docs/reference/deleteGlobalQuantity.html index 9c760863..c9de57a2 100644 --- a/docs/reference/deleteGlobalQuantity.html +++ b/docs/reference/deleteGlobalQuantity.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/deleteKineticFunction.html b/docs/reference/deleteKineticFunction.html index b5edee18..2f1b5150 100644 --- a/docs/reference/deleteKineticFunction.html +++ b/docs/reference/deleteKineticFunction.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/deleteReaction.html b/docs/reference/deleteReaction.html index 95a11fcf..8478a17e 100644 --- a/docs/reference/deleteReaction.html +++ b/docs/reference/deleteReaction.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/deleteSpecies.html b/docs/reference/deleteSpecies.html index a2497151..1fc9573c 100644 --- a/docs/reference/deleteSpecies.html +++ b/docs/reference/deleteSpecies.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/entity_finders.html b/docs/reference/entity_finders.html index 909043f7..5cb380ae 100644 --- a/docs/reference/entity_finders.html +++ b/docs/reference/entity_finders.html @@ -85,7 +85,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getAreaUnit.html b/docs/reference/getAreaUnit.html index 39c6ef7b..8843e885 100644 --- a/docs/reference/getAreaUnit.html +++ b/docs/reference/getAreaUnit.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getCompartmentReferences.html b/docs/reference/getCompartmentReferences.html index 2ba50916..32b6b34a 100644 --- a/docs/reference/getCompartmentReferences.html +++ b/docs/reference/getCompartmentReferences.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getCompartments.html b/docs/reference/getCompartments.html index 3b5c7fa5..d109557e 100644 --- a/docs/reference/getCompartments.html +++ b/docs/reference/getCompartments.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getCopasi.html b/docs/reference/getCopasi.html index a783694a..06b5802f 100644 --- a/docs/reference/getCopasi.html +++ b/docs/reference/getCopasi.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getCurrentModel.html b/docs/reference/getCurrentModel.html index 106a9484..efa62292 100644 --- a/docs/reference/getCurrentModel.html +++ b/docs/reference/getCurrentModel.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getEvents.html b/docs/reference/getEvents.html index 361a3b5c..746bc416 100644 --- a/docs/reference/getEvents.html +++ b/docs/reference/getEvents.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getGlobalQuantities.html b/docs/reference/getGlobalQuantities.html index 5eb2897d..713a69a9 100644 --- a/docs/reference/getGlobalQuantities.html +++ b/docs/reference/getGlobalQuantities.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getGlobalQuantityReferences.html b/docs/reference/getGlobalQuantityReferences.html index 0412f166..6be03ef4 100644 --- a/docs/reference/getGlobalQuantityReferences.html +++ b/docs/reference/getGlobalQuantityReferences.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getInitialTime.html b/docs/reference/getInitialTime.html index 011b7110..15f44c1d 100644 --- a/docs/reference/getInitialTime.html +++ b/docs/reference/getInitialTime.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getInitialValue.html b/docs/reference/getInitialValue.html index 2ebbde86..e4c190c4 100644 --- a/docs/reference/getInitialValue.html +++ b/docs/reference/getInitialValue.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getLengthUnit.html b/docs/reference/getLengthUnit.html index 8344aa7e..ff10003c 100644 --- a/docs/reference/getLengthUnit.html +++ b/docs/reference/getLengthUnit.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getLinearNoiseApproximationSettings.html b/docs/reference/getLinearNoiseApproximationSettings.html index 6adb94a7..0672a49e 100644 --- a/docs/reference/getLinearNoiseApproximationSettings.html +++ b/docs/reference/getLinearNoiseApproximationSettings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getLinkMatrix.html b/docs/reference/getLinkMatrix.html index c5aa460a..ad08826f 100644 --- a/docs/reference/getLinkMatrix.html +++ b/docs/reference/getLinkMatrix.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getLoadedModels.html b/docs/reference/getLoadedModels.html index 5004ab61..450c39ba 100644 --- a/docs/reference/getLoadedModels.html +++ b/docs/reference/getLoadedModels.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getMetabolicControlAnalysisSettings.html b/docs/reference/getMetabolicControlAnalysisSettings.html index 55d66af8..7257e9d1 100644 --- a/docs/reference/getMetabolicControlAnalysisSettings.html +++ b/docs/reference/getMetabolicControlAnalysisSettings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getModelName.html b/docs/reference/getModelName.html index 6257c59a..ec4a12eb 100644 --- a/docs/reference/getModelName.html +++ b/docs/reference/getModelName.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getOptimizationSettings.html b/docs/reference/getOptimizationSettings.html index c5b1601f..cc7d1d8b 100644 --- a/docs/reference/getOptimizationSettings.html +++ b/docs/reference/getOptimizationSettings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getParameterEstimationSettings.html b/docs/reference/getParameterEstimationSettings.html index 2d9b1e66..719fba77 100644 --- a/docs/reference/getParameterEstimationSettings.html +++ b/docs/reference/getParameterEstimationSettings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getParameterReferences.html b/docs/reference/getParameterReferences.html index 732af96c..404cd8a9 100644 --- a/docs/reference/getParameterReferences.html +++ b/docs/reference/getParameterReferences.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getParameters.html b/docs/reference/getParameters.html index 594fe191..398f684f 100644 --- a/docs/reference/getParameters.html +++ b/docs/reference/getParameters.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getQuantityUnit.html b/docs/reference/getQuantityUnit.html index ed0cb19d..84410b1f 100644 --- a/docs/reference/getQuantityUnit.html +++ b/docs/reference/getQuantityUnit.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getReactionMappings.html b/docs/reference/getReactionMappings.html index 7f3b64bc..573cda30 100644 --- a/docs/reference/getReactionMappings.html +++ b/docs/reference/getReactionMappings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getReactionReferences.html b/docs/reference/getReactionReferences.html index aff58eee..cae8267e 100644 --- a/docs/reference/getReactionReferences.html +++ b/docs/reference/getReactionReferences.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getReactions.html b/docs/reference/getReactions.html index 2badc342..afb1dbf2 100644 --- a/docs/reference/getReactions.html +++ b/docs/reference/getReactions.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getReducedStoichiometryMatrix.html b/docs/reference/getReducedStoichiometryMatrix.html index c21de440..cf8019a5 100644 --- a/docs/reference/getReducedStoichiometryMatrix.html +++ b/docs/reference/getReducedStoichiometryMatrix.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getSpecies.html b/docs/reference/getSpecies.html index f389827c..2ce82710 100644 --- a/docs/reference/getSpecies.html +++ b/docs/reference/getSpecies.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getSpeciesReferences.html b/docs/reference/getSpeciesReferences.html index 7c2adb7a..7bee51ca 100644 --- a/docs/reference/getSpeciesReferences.html +++ b/docs/reference/getSpeciesReferences.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getSteadyStateSettings.html b/docs/reference/getSteadyStateSettings.html index 93df871a..591a3834 100644 --- a/docs/reference/getSteadyStateSettings.html +++ b/docs/reference/getSteadyStateSettings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getStoichiometryMatrix.html b/docs/reference/getStoichiometryMatrix.html index 338d8f9a..0b9b60ff 100644 --- a/docs/reference/getStoichiometryMatrix.html +++ b/docs/reference/getStoichiometryMatrix.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getTimeCourseSettings.html b/docs/reference/getTimeCourseSettings.html index e750588f..d66a496c 100644 --- a/docs/reference/getTimeCourseSettings.html +++ b/docs/reference/getTimeCourseSettings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getTimeUnit.html b/docs/reference/getTimeUnit.html index 85edaccb..e7c32695 100644 --- a/docs/reference/getTimeUnit.html +++ b/docs/reference/getTimeUnit.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getValidReactionFunctions.html b/docs/reference/getValidReactionFunctions.html index 69e2cb93..50202532 100644 --- a/docs/reference/getValidReactionFunctions.html +++ b/docs/reference/getValidReactionFunctions.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getValue.html b/docs/reference/getValue.html index c47b55d2..e8a59610 100644 --- a/docs/reference/getValue.html +++ b/docs/reference/getValue.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getVersion.html b/docs/reference/getVersion.html index 6f43f1ef..672248ad 100644 --- a/docs/reference/getVersion.html +++ b/docs/reference/getVersion.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/getVolumeUnit.html b/docs/reference/getVolumeUnit.html index 6f1d8489..07e4ed24 100644 --- a/docs/reference/getVolumeUnit.html +++ b/docs/reference/getVolumeUnit.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/index.html b/docs/reference/index.html index fff0ae49..1cbdd938 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -82,7 +82,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/loadExamples.html b/docs/reference/loadExamples.html index 9a504a6b..7d652722 100644 --- a/docs/reference/loadExamples.html +++ b/docs/reference/loadExamples.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/loadModel.html b/docs/reference/loadModel.html index 8c8112c7..0b1083ee 100644 --- a/docs/reference/loadModel.html +++ b/docs/reference/loadModel.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/loadModelFromString.html b/docs/reference/loadModelFromString.html index aece3985..ef57ab31 100644 --- a/docs/reference/loadModelFromString.html +++ b/docs/reference/loadModelFromString.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/loadSBML.html b/docs/reference/loadSBML.html index 288d9449..67144b33 100644 --- a/docs/reference/loadSBML.html +++ b/docs/reference/loadSBML.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/loadSBMLFromString.html b/docs/reference/loadSBMLFromString.html index 77af9d52..8ca0bba3 100644 --- a/docs/reference/loadSBMLFromString.html +++ b/docs/reference/loadSBMLFromString.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/newCompartment.html b/docs/reference/newCompartment.html index 9a5bbf75..88da0f4d 100644 --- a/docs/reference/newCompartment.html +++ b/docs/reference/newCompartment.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/newEvent.html b/docs/reference/newEvent.html index b5b3cedf..fe0285af 100644 --- a/docs/reference/newEvent.html +++ b/docs/reference/newEvent.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/newGlobalQuantity.html b/docs/reference/newGlobalQuantity.html index ea831c2a..c955c7d6 100644 --- a/docs/reference/newGlobalQuantity.html +++ b/docs/reference/newGlobalQuantity.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/newKineticFunction.html b/docs/reference/newKineticFunction.html index 44d2c9ff..82c4cc24 100644 --- a/docs/reference/newKineticFunction.html +++ b/docs/reference/newKineticFunction.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/newModel.html b/docs/reference/newModel.html index 23f4bf43..3683f7c2 100644 --- a/docs/reference/newModel.html +++ b/docs/reference/newModel.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/newReaction.html b/docs/reference/newReaction.html index 1fdfd02f..c32b39f5 100644 --- a/docs/reference/newReaction.html +++ b/docs/reference/newReaction.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/newSpecies.html b/docs/reference/newSpecies.html index 517069e3..4527e9d1 100644 --- a/docs/reference/newSpecies.html +++ b/docs/reference/newSpecies.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/openCopasi.html b/docs/reference/openCopasi.html index 2c1a9dfc..865ffecf 100644 --- a/docs/reference/openCopasi.html +++ b/docs/reference/openCopasi.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/regex.html b/docs/reference/regex.html index bd379fe9..a1311354 100644 --- a/docs/reference/regex.html +++ b/docs/reference/regex.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/runLinearNoiseApproximation.html b/docs/reference/runLinearNoiseApproximation.html index fa7ab41f..3eac8402 100644 --- a/docs/reference/runLinearNoiseApproximation.html +++ b/docs/reference/runLinearNoiseApproximation.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/runMetabolicControlAnalysis.html b/docs/reference/runMetabolicControlAnalysis.html index adb8b5e5..9fd4dd1d 100644 --- a/docs/reference/runMetabolicControlAnalysis.html +++ b/docs/reference/runMetabolicControlAnalysis.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/runOptimization.html b/docs/reference/runOptimization.html index 3699619e..1c7cc198 100644 --- a/docs/reference/runOptimization.html +++ b/docs/reference/runOptimization.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/runParameterEstimation.html b/docs/reference/runParameterEstimation.html index ba80fb6d..5467c8c9 100644 --- a/docs/reference/runParameterEstimation.html +++ b/docs/reference/runParameterEstimation.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/runSigmaPoint.html b/docs/reference/runSigmaPoint.html index 934b4225..337c1b81 100644 --- a/docs/reference/runSigmaPoint.html +++ b/docs/reference/runSigmaPoint.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/runSteadyState.html b/docs/reference/runSteadyState.html index ad511680..4b7b096f 100644 --- a/docs/reference/runSteadyState.html +++ b/docs/reference/runSteadyState.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/runTimeCourse.html b/docs/reference/runTimeCourse.html index 92ef15ea..ad128425 100644 --- a/docs/reference/runTimeCourse.html +++ b/docs/reference/runTimeCourse.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/saveModel.html b/docs/reference/saveModel.html index 50e9e39d..5c026f19 100644 --- a/docs/reference/saveModel.html +++ b/docs/reference/saveModel.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/saveModelToString.html b/docs/reference/saveModelToString.html index 001ceda3..c25161f3 100644 --- a/docs/reference/saveModelToString.html +++ b/docs/reference/saveModelToString.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/saveSBML.html b/docs/reference/saveSBML.html index a6fc7ae7..072fe506 100644 --- a/docs/reference/saveSBML.html +++ b/docs/reference/saveSBML.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/saveSBMLToString.html b/docs/reference/saveSBMLToString.html index 8e15ec89..c54eb8ca 100644 --- a/docs/reference/saveSBMLToString.html +++ b/docs/reference/saveSBMLToString.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setAreaUnit.html b/docs/reference/setAreaUnit.html index d9c44875..054913fc 100644 --- a/docs/reference/setAreaUnit.html +++ b/docs/reference/setAreaUnit.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setCompartments.html b/docs/reference/setCompartments.html index 823dfbdd..7aecb043 100644 --- a/docs/reference/setCompartments.html +++ b/docs/reference/setCompartments.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setCurrentModel.html b/docs/reference/setCurrentModel.html index d770c254..62d8ab16 100644 --- a/docs/reference/setCurrentModel.html +++ b/docs/reference/setCurrentModel.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setEvents.html b/docs/reference/setEvents.html index 489fdec1..495976da 100644 --- a/docs/reference/setEvents.html +++ b/docs/reference/setEvents.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setGlobalQuantities.html b/docs/reference/setGlobalQuantities.html index 278f61c3..ed6896f6 100644 --- a/docs/reference/setGlobalQuantities.html +++ b/docs/reference/setGlobalQuantities.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setInitialTime.html b/docs/reference/setInitialTime.html index ad32e57a..64764927 100644 --- a/docs/reference/setInitialTime.html +++ b/docs/reference/setInitialTime.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setLengthUnit.html b/docs/reference/setLengthUnit.html index 74495b07..8889417a 100644 --- a/docs/reference/setLengthUnit.html +++ b/docs/reference/setLengthUnit.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setLinearNoiseApproximationSettings.html b/docs/reference/setLinearNoiseApproximationSettings.html index fd39b410..881f4c8a 100644 --- a/docs/reference/setLinearNoiseApproximationSettings.html +++ b/docs/reference/setLinearNoiseApproximationSettings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setMetabolicControlAnalysisSettings.html b/docs/reference/setMetabolicControlAnalysisSettings.html index 7738c7a3..57e80285 100644 --- a/docs/reference/setMetabolicControlAnalysisSettings.html +++ b/docs/reference/setMetabolicControlAnalysisSettings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setModelName.html b/docs/reference/setModelName.html index 12d2a13e..c8ee4d76 100644 --- a/docs/reference/setModelName.html +++ b/docs/reference/setModelName.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setOptimizationSettings.html b/docs/reference/setOptimizationSettings.html index cedb8d7a..c70e8a14 100644 --- a/docs/reference/setOptimizationSettings.html +++ b/docs/reference/setOptimizationSettings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setParameterEstimationSettings.html b/docs/reference/setParameterEstimationSettings.html index ecb655b2..64d57b10 100644 --- a/docs/reference/setParameterEstimationSettings.html +++ b/docs/reference/setParameterEstimationSettings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setParameters.html b/docs/reference/setParameters.html index 778e7ba6..c049345d 100644 --- a/docs/reference/setParameters.html +++ b/docs/reference/setParameters.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setQuantityUnit.html b/docs/reference/setQuantityUnit.html index 926c67d7..4c01d86c 100644 --- a/docs/reference/setQuantityUnit.html +++ b/docs/reference/setQuantityUnit.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setReactionFunction.html b/docs/reference/setReactionFunction.html index e8ad18ee..d002d542 100644 --- a/docs/reference/setReactionFunction.html +++ b/docs/reference/setReactionFunction.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setReactionMappings.html b/docs/reference/setReactionMappings.html index ae3ef386..4c640f94 100644 --- a/docs/reference/setReactionMappings.html +++ b/docs/reference/setReactionMappings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setReactions.html b/docs/reference/setReactions.html index 9668f1ad..e6a571d4 100644 --- a/docs/reference/setReactions.html +++ b/docs/reference/setReactions.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setSpecies.html b/docs/reference/setSpecies.html index b43c2d2e..56b75149 100644 --- a/docs/reference/setSpecies.html +++ b/docs/reference/setSpecies.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setSteadyStateSettings.html b/docs/reference/setSteadyStateSettings.html index 6e5c5fea..b3b6cc39 100644 --- a/docs/reference/setSteadyStateSettings.html +++ b/docs/reference/setSteadyStateSettings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setTimeCourseSettings.html b/docs/reference/setTimeCourseSettings.html index 1ad02991..8ed24ce2 100644 --- a/docs/reference/setTimeCourseSettings.html +++ b/docs/reference/setTimeCourseSettings.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setTimeUnit.html b/docs/reference/setTimeUnit.html index f00f31e9..12020600 100644 --- a/docs/reference/setTimeUnit.html +++ b/docs/reference/setTimeUnit.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/setVolumeUnit.html b/docs/reference/setVolumeUnit.html index 5058c785..78256b86 100644 --- a/docs/reference/setVolumeUnit.html +++ b/docs/reference/setVolumeUnit.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/unloadAllModels.html b/docs/reference/unloadAllModels.html index 307546d0..e0a5d128 100644 --- a/docs/reference/unloadAllModels.html +++ b/docs/reference/unloadAllModels.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/unloadModel.html b/docs/reference/unloadModel.html index 2a950759..5bd02c83 100644 --- a/docs/reference/unloadModel.html +++ b/docs/reference/unloadModel.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1 diff --git a/docs/reference/updateInitialState.html b/docs/reference/updateInitialState.html index e8dbfbac..b9953124 100644 --- a/docs/reference/updateInitialState.html +++ b/docs/reference/updateInitialState.html @@ -83,7 +83,7 @@ CoRC - 0.6.0 + 0.6.1