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v1.0.3

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@jsxlei jsxlei released this 16 Apr 23:18
· 18 commits to main since this release

Release Note:

  1. Fix np.warnings
  2. Adapt with newest scanpy version 1.10, by settting previous inplace=False parameter to True and subset to False in sc.pp.highly_variable_genes, and add adata = adata[:, adata.var.highly_variable].
  3. Support new layers, user can custom the data as training which stored as X, or stored in layers, or obsm, e.g. X_pca.
  4. Remove batch panel in the plot when number of batch is 1
  5. Custom the cell type label on the UMAP with option --cell_type
  6. Support to keep mt genes with option --keep_mt