diff --git a/mrLoadRet/Plugin/GLM_v2/transformROIFunctions/makeROIsExactlyContiguous.m b/mrLoadRet/Plugin/GLM_v2/transformROIFunctions/makeROIsExactlyContiguous.m new file mode 100644 index 000000000..a455bdd8c --- /dev/null +++ b/mrLoadRet/Plugin/GLM_v2/transformROIFunctions/makeROIsExactlyContiguous.m @@ -0,0 +1,59 @@ +% makeROIsExactlyContiguous.m +% +% usage: transformedRois = makeROIsExactlyContiguous(rois,margin,) +% by: julien besle +% date: 11/01/2011 +% +% purpose: attribute voxels shared by two ROIs to the closest of these two ROIs, with +% the two resulting two ROIs then becoming exactly contiguous. +% This function will run with more than two ROIs and will apply to all pairs of ROIs +% This assumes that no voxel is shared by more than two ROIs. If this is the case, +% then results will depend on the order in which the ROIs are passed + +function rois = makeROIsExactlyContiguous(rois) + +if ~ismember(nargin,[1]) + help expandROI; + return +end + +if numel(rois) < 2 + mrWarnDlg('(makeROIsExactlyContiguous) You need to provide at least 2 ROIs '); + return +end + +% Check that transformation matrices are identical for all ROIs +for iRoi = 2:length(rois) + if any(any( (rois(1).xform - rois(iRoi).xform) > 10e-6)) + mrWarnDlg('(makeROIsExactlyContiguous) All ROIs must be converted to the same space (set the roiSpace option to something other than ''Native'').'); + return + end +end + + +for iRoi = 1:length(rois) + for jRoi = iRoi+1:length(rois) + coords1 = rois(iRoi).coords'; + coords2 = rois(jRoi).coords'; + [commonCoordinates, indexROI1, indexROI2] = intersect(coords1,coords2,'rows'); + %remove common coordinates from ROIs 1 and 2 + coords1 = setdiff(coords1,commonCoordinates,'rows'); + coords2 = setdiff(coords2,commonCoordinates,'rows'); + %attribute common coordinates to one or the other ROI depending on distance + belongsToROI1 = false(size(commonCoordinates,1),1); + for iCoords = 1:size(commonCoordinates,1) + %compute distance between these coordinates and all coordinates unique to either both ROI + distanceCoords1 = sqrt(sum((repmat(commonCoordinates(iCoords,1:3),size(coords1,1),1) - coords1(:,1:3)).^2,2)); + distanceCoords2 = sqrt(sum((repmat(commonCoordinates(iCoords,1:3),size(coords2,1),1) - coords2(:,1:3)).^2,2)); + %identify closest ROI + if min(distanceCoords1) < min(distanceCoords2) + belongsToROI1(iCoords) = true; + end + end + % delete coords that belong to the other ROI + rois(iRoi).coords(:,indexROI1(~belongsToROI1'))=[]; + rois(jRoi).coords(:,indexROI2(belongsToROI1'))=[]; + end +end + +