diff --git a/requirements.txt b/requirements.txt index 9f71b24..f700562 100644 --- a/requirements.txt +++ b/requirements.txt @@ -6,5 +6,4 @@ pyfaidx pysam snakemake svg42pdf>=0.1.1 -termcolor diff --git a/rnftools/__init__.py b/rnftools/__init__.py index bd244e3..d267e1a 100644 --- a/rnftools/__init__.py +++ b/rnftools/__init__.py @@ -3,7 +3,6 @@ import snakemake import os import re -from termcolor import colored, cprint import rnftools.mishmash import rnftools.lavender @@ -72,12 +71,17 @@ def message(message, program=None, subprogram=None): else: subprogram_part = "{}: ".format(subprogram) - cprint( + print( "".join([program_part, subprogram_part, message]), - "blue", - attrs=['bold'], + file=sys.stderr, ) + #cprint( + # "".join([program_part, subprogram_part, message]), + # "blue", + # attrs=['bold'], + #) + def error(message, program=None, subprogram=None, exception=None): if exception != None: @@ -93,11 +97,15 @@ def error(message, program=None, subprogram=None, exception=None): else: subprogram_part = "{}: ".format(subprogram) - cprint( + print( "".join([program_part, subprogram_part, "Error: ", message]), - "red", - attrs=['bold'], + file=sys.stderr, ) + #cprint( + # "".join([program_part, subprogram_part, "Error: ", message]), + # "red", + # attrs=['bold'], + #) if exception != None: raise exception(message)