From a4cc4236d6cda619e66f138d3a4a8f640849acfc Mon Sep 17 00:00:00 2001 From: Katarzyna Sikora Date: Fri, 14 Jul 2017 10:17:11 +0200 Subject: [PATCH] user guide added --- WGBS.pipe.ruffus.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/WGBS.pipe.ruffus.py b/WGBS.pipe.ruffus.py index 3bddca2..c74ee38 100755 --- a/WGBS.pipe.ruffus.py +++ b/WGBS.pipe.ruffus.py @@ -145,7 +145,7 @@ print('Converted reference genome not specified, will be generated by the pipeline.') args.convRef=True else: - logger.info('Converted reference genome not recognized. Please check spelling and/or path.') + logger.error('Converted reference genome not recognized. Please check spelling and/or path.') logger.debug('Reference genome is '+refG) logger.debug('Converted reference genome is '+crefG) @@ -172,7 +172,7 @@ ###################################################################################################### #add folder with custom modules to path -sys.path.append('/data/manke/repository/scripts/DNA_methylation/WGBS_pipe/v0.01') +sys.path.append('/data/manke/repository/scripts/DNA_methylation/WGBS_pipe/v0.02') #############################PIPELINE################################################################################# #TRIM READS############################################################################################################