From d109a1303165b69528d9bb7ca8321f2edbb6c803 Mon Sep 17 00:00:00 2001
From: Kevin Murray <spam@kdmurray.id.au>
Date: Tue, 12 Jan 2016 16:12:25 +1100
Subject: [PATCH] Fix static makefile to work with docker image

---
 src/static.makefile | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/src/static.makefile b/src/static.makefile
index e6701b0..7aa2cae 100644
--- a/src/static.makefile
+++ b/src/static.makefile
@@ -21,8 +21,9 @@
 
 
 CXX 	 := g++
-CXXFLAGS += -O3 -static -static-libstdc++ -std=c++11 -fopenmp  -DSEQAN_HAS_GZIP=1 -DSEQAN_HAS_BZIP2=1 -I src -I src/ext/
-LDFLAGS  += -lz -lbz2
+CXXFLAGS += -O3 -static -static-libstdc++ -std=c++11 -fopenmp  -DSEQAN_HAS_GZIP=1 -DSEQAN_HAS_BZIP2=1 \
+		   	-I src -I src/ext/ -I src/ext/eigen3 -I src/ext/seqan/core/include
+LDFLAGS  += /usr/local/lib/libz.a /usr/local/lib/libbz2.a
 
 VER=$(shell git describe --always)