diff --git a/R/basilisk.R b/R/basilisk.R index e71be8c..f26bdae 100644 --- a/R/basilisk.R +++ b/R/basilisk.R @@ -2,448 +2,29 @@ # and dependencies pinned to fix various issues linked below .scvelo_dependencies <- list( "x86_64" = c( - '_libgcc_mutex==0.1', - '_openmp_mutex==4.5', - 'absl-py==2.1.0', - 'alsa-lib==1.2.11', - 'anndata==0.10.7', - 'annotated-types==0.7.0', - 'anyio==4.3.0', - 'aom==3.9.0', - 'argon2-cffi==23.1.0', - 'argon2-cffi-bindings==21.2.0', - 'array-api-compat==1.6', - 'arrow==1.3.0', - 'asttokens==2.4.1', - 'async-lru==2.0.4', - 'attr==2.5.1', - 'attrs==23.2.0', - 'babel==2.14.0', - 'beautifulsoup4==4.12.3', - 'bleach==6.1.0', - 'blessed==1.19.1', - 'blosc==1.21.5', - 'boto3==1.34.111', - 'botocore==1.34.111', - 'brotli==1.1.0', - 'brotli-bin==1.1.0', - 'brotli-python==1.1.0', - 'bzip2==1.0.8', - 'c-ares==1.28.1', - 'ca-certificates==2024.2.2', - 'cachecontrol==0.14.0', - 'cachecontrol-with-filecache==0.14.0', - 'cached-property==1.5.2', - 'cached_property==1.5.2', - 'cairo==1.18.0', - 'certifi==2024.2.2', - 'cffi==1.16.0', - 'charset-normalizer==3.3.2', - 'chex==0.1.83', - 'cleo==2.1.0', - 'click==8.1.7', - 'colorama==0.4.6', - 'comm==0.2.2', - 'contextlib2==21.6.0', - 'contourpy==1.2.1', - 'crashtest==0.4.1', - 'croniter==1.3.15', - 'cryptography==42.0.7', - 'cycler==0.12.1', - 'dateutils==0.6.12', - 'dav1d==1.2.1', - 'dbus==1.13.6', - 'debugpy==1.8.1', - 'decorator==5.1.1', - 'deepdiff==7.0.1', - 'defusedxml==0.7.1', - 'distlib==0.3.8', - 'dm-tree==0.1.8', - 'dnspython==2.6.1', - 'docrep==0.3.2', - 'dulwich==0.21.7', - 'email-validator==2.1.1', - 'email_validator==2.1.1', - 'entrypoints==0.4', - 'et_xmlfile==1.1.0', - 'etils==1.6.0', - 'exceptiongroup==1.2.0', - 'executing==2.0.1', - 'expat==2.6.2', - 'fastapi==0.111.0', - 'fastapi-cli==0.0.4', - 'filelock==3.14.0', - 'flax==0.8.3', - 'font-ttf-dejavu-sans-mono==2.37', - 'font-ttf-inconsolata==3.000', - 'font-ttf-source-code-pro==2.038', - 'font-ttf-ubuntu==0.83', - 'fontconfig==2.14.2', - 'fonts-conda-ecosystem==1', - 'fonts-conda-forge==1', - 'fonttools==4.51.0', - 'fqdn==1.5.1', - 'freetype==2.12.1', - 'fsspec==2023.12.2', - 'get-annotations==0.1.2', - 'gettext==0.22.5', - 'gettext-tools==0.22.5', - 'glib==2.80.2', - 'glib-tools==2.80.2', - 'gmp==6.3.0', - 'gmpy2==2.1.5', - 'graphite2==1.3.13', - 'gst-plugins-base==1.24.3', - 'gstreamer==1.24.3', - 'h11==0.14.0', - 'h2==4.1.0', - 'h5py==3.11.0', - 'harfbuzz==8.5.0', - 'hdf5==1.14.3', - 'hpack==4.0.0', - 'httpcore==1.0.5', - 'httpx==0.27.0', - 'hyperframe==6.0.1', - 'icu==73.2', - 'idna==3.7', - 'importlib-metadata==7.1.0', - 'importlib-resources==6.4.0', - 'importlib_metadata==7.1.0', - 'importlib_resources==6.4.0', - 'inquirer==3.1.4', - 'ipykernel==6.29.3', - 'ipython==8.18.1', - 'ipywidgets==8.1.2', - 'isoduration==20.11.0', - 'itsdangerous==2.2.0', - 'jaraco.classes==3.4.0', - 'jax==0.4.27', - 'jaxlib==0.4.23', - 'jedi==0.19.1', - 'jeepney==0.8.0', - 'jinja2==3.1.4', - 'jmespath==1.0.1', - 'joblib==1.4.2', - 'json5==0.9.25', - 'jsonpointer==2.4', - 'jsonschema==4.22.0', - 'jsonschema-specifications==2023.12.1', - 'jsonschema-with-format-nongpl==4.22.0', - 'jupyter-lsp==2.2.5', - 'jupyter_client==8.6.1', - 'jupyter_core==5.7.2', - 'jupyter_events==0.10.0', - 'jupyter_server==2.14.0', - 'jupyter_server_terminals==0.5.3', - 'jupyterlab==4.2.0', - 'jupyterlab_pygments==0.3.0', - 'jupyterlab_server==2.27.2', - 'jupyterlab_widgets==3.0.10', - 'keyring==24.3.1', - 'keyutils==1.6.1', - 'kiwisolver==1.4.5', - 'krb5==1.21.2', - 'lame==3.100', - 'lcms2==2.16', - 'ld_impl_linux-64==2.40', - 'legacy-api-wrap==1.4', - 'lerc==4.0.0', - 'libabseil==20240116.2', - 'libaec==1.1.3', - 'libasprintf==0.22.5', - 'libasprintf-devel==0.22.5', - 'libavif16==1.0.4', - 'libblas==3.9.0', - 'libbrotlicommon==1.1.0', - 'libbrotlidec==1.1.0', - 'libbrotlienc==1.1.0', - 'libcap==2.69', - 'libcblas==3.9.0', - 'libclang-cpp15==15.0.7', - 'libclang13==18.1.5', - 'libcups==2.3.3', - 'libcurl==8.8.0', - 'libdeflate==1.20', - 'libedit==3.1.20191231', - 'libev==4.33', - 'libevent==2.1.12', - 'libexpat==2.6.2', - 'libffi==3.4.2', - 'libflac==1.4.3', - 'libgcc-ng==13.2.0', - 'libgcrypt==1.10.3', - 'libgettextpo==0.22.5', - 'libgettextpo-devel==0.22.5', - 'libgfortran-ng==13.2.0', - 'libgfortran5==13.2.0', - 'libglib==2.80.2', - 'libgomp==13.2.0', - 'libgpg-error==1.49', - 'libgrpc==1.62.2', - 'libhwloc==2.10.0', - 'libiconv==1.17', - 'libjpeg-turbo==3.0.0', - 'liblapack==3.9.0', - 'libllvm14==14.0.6', - 'libllvm15==15.0.7', - 'libllvm18==18.1.5', - 'libnghttp2==1.58.0', - 'libnsl==2.0.1', - 'libogg==1.3.4', - 'libopenblas==0.3.27', - 'libopus==1.3.1', - 'libpng==1.6.43', - 'libpq==16.3', - 'libprotobuf==4.25.3', - 'libre2-11==2023.09.01', - 'libsndfile==1.2.2', - 'libsodium==1.0.18', - 'libsqlite==3.45.3', - 'libssh2==1.11.0', - 'libstdcxx-ng==13.2.0', - 'libsystemd0==255', - 'libtiff==4.6.0', - 'libtorch==2.3.0', - 'libuuid==2.38.1', - 'libuv==1.48.0', - 'libvorbis==1.3.7', - 'libwebp-base==1.4.0', - 'libxcb==1.15', - 'libxkbcommon==1.7.0', - 'libxml2==2.12.7', - 'libzlib==1.2.13', - 'lightning==2.0.4', - 'lightning-cloud==0.5.69', - 'lightning-utilities==0.11.2', - 'llvmlite==0.42.0', - 'loompy==3.0.6', - 'lz4-c==1.9.4', - 'markdown-it-py==3.0.0', - 'markupsafe==2.1.5', - 'matplotlib==3.7.3', - 'matplotlib-base==3.7.3', - 'matplotlib-inline==0.1.7', - 'mdurl==0.1.2', - 'mistune==3.0.2', - 'ml-collections==0.1.1', - 'ml_dtypes==0.4.0', - 'more-itertools==10.2.0', - 'mpc==1.3.1', - 'mpfr==4.2.1', - 'mpg123==1.32.6', - 'mpmath==1.3.0', - 'msgpack-python==1.0.8', - 'mudata==0.2.3', - 'multipledispatch==0.6.0', - 'munkres==1.1.4', - 'mysql-common==8.3.0', - 'mysql-libs==8.3.0', - 'natsort==8.4.0', - 'nbclient==0.10.0', - 'nbconvert-core==7.16.4', - 'nbformat==5.10.4', - 'ncurses==6.5', - 'nest-asyncio==1.6.0', - 'networkx==3.2.1', - 'nomkl==1.0', - 'notebook-shim==0.2.4', - 'nspr==4.35', - 'nss==3.100', - 'numba==0.59.1', - 'numpy==1.23.1', - 'numpy_groupies==0.11.1', - 'numpyro==0.15.0', - 'openjpeg==2.5.2', - 'openpyxl==3.1.2', - 'openssl==3.3.0', - 'opt-einsum==3.3.0', - 'opt_einsum==3.3.0', - 'optax==0.2.2', - 'orbax-checkpoint==0.4.4', - 'ordered-set==4.1.0', - 'orjson==3.10.3', - 'overrides==7.7.0', - 'packaging==24.0', - 'pandas==2.2.2', - 'pandocfilters==1.5.0', - 'parso==0.8.4', - 'patsy==0.5.6', - 'pcre2==10.43', - 'pexpect==4.9.0', - 'pickleshare==0.7.5', - 'pillow==10.3.0', - 'pip==24.0', - 'pixman==0.43.2', - 'pkginfo==1.10.0', - 'pkgutil-resolve-name==1.3.10', - 'platformdirs==4.2.2', - 'ply==3.11', - 'poetry==1.8.3', - 'poetry-core==1.9.0', - 'poetry-plugin-export==1.8.0', - 'prometheus_client==0.20.0', - 'prompt-toolkit==3.0.42', - 'protobuf==4.25.3', - 'psutil==5.9.8', - 'pthread-stubs==0.4', - 'ptyprocess==0.7.0', - 'pulseaudio-client==17.0', - 'pure_eval==0.2.2', - 'pybind11-abi==4', - 'pycparser==2.22', - 'pydantic==2.7.1', - 'pydantic-core==2.18.2', - 'pygments==2.18.0', - 'pyjwt==2.8.0', - 'pynndescent==0.5.12', - 'pyparsing==3.1.2', - 'pyproject_hooks==1.1.0', - 'pyqt==5.15.9', - 'pyqt5-sip==12.12.2', - 'pyro-api==0.1.2', - 'pyro-ppl==1.9.0', - 'pysocks==1.7.1', - 'python==3.9.12', - 'python-build==1.2.1', - 'python-dateutil==2.9.0', - 'python-editor==1.0.4', - 'python-fastjsonschema==2.19.1', - 'python-installer==0.7.0', - 'python-json-logger==2.0.7', - 'python-multipart==0.0.9', - 'python-tzdata==2024.1', - 'python_abi==3.9', - 'pytorch==2.3.0', - 'pytorch-lightning==2.2.2', - 'pytz==2024.1', - 'pyyaml==6.0.1', - 'pyzmq==26.0.3', - 'qt-main==5.15.8', - 'rapidfuzz==3.9.1', - 'rav1e==0.6.6', - 're2==2023.09.01', - 'readchar==4.1.0', - 'readline==8.2', - 'referencing==0.35.1', - 'requests==2.32.2', - 'requests-toolbelt==1.0.0', - 'rfc3339-validator==0.1.4', - 'rfc3986-validator==0.1.1', - 'rich==13.7.1', - 'rpds-py==0.18.1', - 's3transfer==0.10.1', - 'scanpy==1.10.1', - 'scikit-learn==1.5.0', - 'scipy==1.13.0', - 'scvelo==0.2.5', - 'scvi-tools==1.1.2', - 'seaborn==0.13.2', - 'seaborn-base==0.13.2', - 'secretstorage==3.3.3', - 'send2trash==1.8.3', - 'session-info==1.0.0', - 'setuptools==70.0.0', - 'shellingham==1.5.4', - 'sip==6.7.12', - 'six==1.16.0', - 'sleef==3.5.1', - 'snappy==1.2.0', - 'sniffio==1.3.1', - 'soupsieve==2.5', - 'sparse==0.15.3', - 'sqlite==3.45.3', - 'stack_data==0.6.2', - 'starlette==0.37.2', - 'starsessions==1.3.0', - 'statsmodels==0.14.2', - 'stdlib-list==0.10.0', - 'svt-av1==2.1.0', - 'sympy==1.12', - 'tbb==2021.12.0', - 'tensorstore==0.1.59', - 'terminado==0.18.1', - 'threadpoolctl==3.5.0', - 'tinycss2==1.3.0', - 'tk==8.6.13', - 'toml==0.10.2', - 'tomli==2.0.1', - 'tomlkit==0.12.5', - 'toolz==0.12.1', - 'torchmetrics==1.4.0.post0', - 'tornado==6.4', - 'tqdm==4.66.4', - 'traitlets==5.14.3', - 'trove-classifiers==2024.5.22', - 'typer==0.12.3', - 'typer-slim==0.12.3', - 'typer-slim-standard==0.12.3', - 'types-python-dateutil==2.9.0.20240316', - 'typing-extensions==4.11.0', - 'typing_extensions==4.11.0', - 'typing_utils==0.1.0', - 'tzdata==2024a', - 'ujson==5.10.0', - 'umap-learn==0.5.5', - 'unicodedata2==15.1.0', - 'uri-template==1.3.0', - 'urllib3==1.26.18', - 'uvicorn==0.29.0', - 'virtualenv==20.26.2', - 'wcwidth==0.2.13', - 'webcolors==1.13', - 'webencodings==0.5.1', - 'websocket-client==1.8.0', - 'websockets==11.0.3', - 'wheel==0.43.0', - 'widgetsnbextension==4.0.10', - 'xarray==2024.5.0', - 'xcb-util==0.4.0', - 'xcb-util-image==0.4.0', - 'xcb-util-keysyms==0.4.0', - 'xcb-util-renderutil==0.3.9', - 'xcb-util-wm==0.4.1', - 'xkeyboard-config==2.41', - 'xlrd==1.2.0', - 'xorg-kbproto==1.0.7', - 'xorg-libice==1.1.1', - 'xorg-libsm==1.2.4', - 'xorg-libx11==1.8.9', - 'xorg-libxau==1.0.11', - 'xorg-libxdmcp==1.1.3', - 'xorg-libxext==1.3.4', - 'xorg-libxrender==0.9.11', - 'xorg-renderproto==0.11.1', - 'xorg-xextproto==7.3.0', - 'xorg-xf86vidmodeproto==2.3.1', - 'xorg-xproto==7.0.31', - 'xz==5.2.6', - 'yaml==0.2.5', - 'zeromq==4.3.5', - 'zipp==3.17.0', - 'zlib==1.2.13', - 'zstd==1.5.6' - ), - "aarch64" = c( + '_libgcc_mutex==0.1', + '_openmp_mutex==4.5', 'absl-py==2.1.0', + 'alsa-lib==1.2.11', 'anndata==0.10.7', 'annotated-types==0.7.0', 'anyio==4.3.0', 'aom==3.9.0', - 'appnope==0.1.4', 'argon2-cffi==23.1.0', 'argon2-cffi-bindings==21.2.0', 'array-api-compat==1.6', 'arrow==1.3.0', 'asttokens==2.4.1', 'async-lru==2.0.4', + 'attr==2.5.1', 'attrs==23.2.0', 'babel==2.14.0', 'beautifulsoup4==4.12.3', 'bleach==6.1.0', 'blessed==1.19.1', 'blosc==1.21.5', - 'boto3==1.34.109', - 'botocore==1.34.110', + 'boto3==1.34.111', + 'botocore==1.34.111', 'brotli==1.1.0', 'brotli-bin==1.1.0', 'brotli-python==1.1.0', @@ -454,6 +35,7 @@ 'cachecontrol-with-filecache==0.14.0', 'cached-property==1.5.2', 'cached_property==1.5.2', + 'cairo==1.18.0', 'certifi==2024.2.2', 'cffi==1.16.0', 'charset-normalizer==3.3.2', @@ -466,9 +48,11 @@ 'contourpy==1.2.1', 'crashtest==0.4.1', 'croniter==1.3.15', + 'cryptography==42.0.7', 'cycler==0.12.1', 'dateutils==0.6.12', 'dav1d==1.2.1', + 'dbus==1.13.6', 'debugpy==1.8.1', 'decorator==5.1.1', 'deepdiff==7.0.1', @@ -485,20 +69,36 @@ 'etils==1.6.0', 'exceptiongroup==1.2.0', 'executing==2.0.1', + 'expat==2.6.2', 'fastapi==0.111.0', 'fastapi-cli==0.0.4', 'filelock==3.14.0', 'flax==0.8.3', + 'font-ttf-dejavu-sans-mono==2.37', + 'font-ttf-inconsolata==3.000', + 'font-ttf-source-code-pro==2.038', + 'font-ttf-ubuntu==0.83', + 'fontconfig==2.14.2', + 'fonts-conda-ecosystem==1', + 'fonts-conda-forge==1', 'fonttools==4.51.0', 'fqdn==1.5.1', 'freetype==2.12.1', 'fsspec==2023.12.2', 'get-annotations==0.1.2', + 'gettext==0.22.5', + 'gettext-tools==0.22.5', + 'glib==2.80.2', + 'glib-tools==2.80.2', 'gmp==6.3.0', 'gmpy2==2.1.5', + 'graphite2==1.3.13', + 'gst-plugins-base==1.24.3', + 'gstreamer==1.24.3', 'h11==0.14.0', 'h2==4.1.0', 'h5py==3.11.0', + 'harfbuzz==8.5.0', 'hdf5==1.14.3', 'hpack==4.0.0', 'httpcore==1.0.5', @@ -520,6 +120,7 @@ 'jax==0.4.27', 'jaxlib==0.4.23', 'jedi==0.19.1', + 'jeepney==0.8.0', 'jinja2==3.1.4', 'jmespath==1.0.1', 'joblib==1.4.2', @@ -536,55 +137,84 @@ 'jupyter_server_terminals==0.5.3', 'jupyterlab==4.2.0', 'jupyterlab_pygments==0.3.0', - 'jupyterlab_server==2.27.1', + 'jupyterlab_server==2.27.2', 'jupyterlab_widgets==3.0.10', 'keyring==24.3.1', + 'keyutils==1.6.1', 'kiwisolver==1.4.5', 'krb5==1.21.2', + 'lame==3.100', 'lcms2==2.16', + 'ld_impl_linux-64==2.40', 'legacy-api-wrap==1.4', 'lerc==4.0.0', 'libabseil==20240116.2', 'libaec==1.1.3', + 'libasprintf==0.22.5', + 'libasprintf-devel==0.22.5', 'libavif16==1.0.4', 'libblas==3.9.0', 'libbrotlicommon==1.1.0', 'libbrotlidec==1.1.0', 'libbrotlienc==1.1.0', + 'libcap==2.69', 'libcblas==3.9.0', + 'libclang-cpp15==15.0.7', + 'libclang13==18.1.5', + 'libcups==2.3.3', 'libcurl==8.8.0', - 'libcxx==17.0.6', 'libdeflate==1.20', 'libedit==3.1.20191231', 'libev==4.33', + 'libevent==2.1.12', + 'libexpat==2.6.2', 'libffi==3.4.2', - 'libgfortran==5.0.0', + 'libflac==1.4.3', + 'libgcc-ng==13.2.0', + 'libgcrypt==1.10.3', + 'libgettextpo==0.22.5', + 'libgettextpo-devel==0.22.5', + 'libgfortran-ng==13.2.0', 'libgfortran5==13.2.0', + 'libglib==2.80.2', + 'libgomp==13.2.0', + 'libgpg-error==1.49', 'libgrpc==1.62.2', 'libhwloc==2.10.0', 'libiconv==1.17', 'libjpeg-turbo==3.0.0', 'liblapack==3.9.0', 'libllvm14==14.0.6', + 'libllvm15==15.0.7', + 'libllvm18==18.1.5', 'libnghttp2==1.58.0', + 'libnsl==2.0.1', + 'libogg==1.3.4', 'libopenblas==0.3.27', + 'libopus==1.3.1', 'libpng==1.6.43', + 'libpq==16.3', 'libprotobuf==4.25.3', 'libre2-11==2023.09.01', + 'libsndfile==1.2.2', 'libsodium==1.0.18', 'libsqlite==3.45.3', 'libssh2==1.11.0', + 'libstdcxx-ng==13.2.0', + 'libsystemd0==255', 'libtiff==4.6.0', 'libtorch==2.3.0', + 'libuuid==2.38.1', 'libuv==1.48.0', + 'libvorbis==1.3.7', 'libwebp-base==1.4.0', 'libxcb==1.15', + 'libxkbcommon==1.7.0', 'libxml2==2.12.7', 'libzlib==1.2.13', 'lightning==2.0.4', 'lightning-cloud==0.5.69', 'lightning-utilities==0.11.2', - 'llvm-openmp==18.1.5', 'llvmlite==0.42.0', 'loompy==3.0.6', 'lz4-c==1.9.4', @@ -600,11 +230,14 @@ 'more-itertools==10.2.0', 'mpc==1.3.1', 'mpfr==4.2.1', + 'mpg123==1.32.6', 'mpmath==1.3.0', 'msgpack-python==1.0.8', 'mudata==0.2.3', 'multipledispatch==0.6.0', 'munkres==1.1.4', + 'mysql-common==8.3.0', + 'mysql-libs==8.3.0', 'natsort==8.4.0', 'nbclient==0.10.0', 'nbconvert-core==7.16.4', @@ -614,6 +247,8 @@ 'networkx==3.2.1', 'nomkl==1.0', 'notebook-shim==0.2.4', + 'nspr==4.35', + 'nss==3.100', 'numba==0.59.1', 'numpy==1.23.1', 'numpy_groupies==0.11.1', @@ -633,13 +268,16 @@ 'pandocfilters==1.5.0', 'parso==0.8.4', 'patsy==0.5.6', + 'pcre2==10.43', 'pexpect==4.9.0', 'pickleshare==0.7.5', 'pillow==10.3.0', 'pip==24.0', + 'pixman==0.43.2', 'pkginfo==1.10.0', 'pkgutil-resolve-name==1.3.10', 'platformdirs==4.2.2', + 'ply==3.11', 'poetry==1.8.3', 'poetry-core==1.9.0', 'poetry-plugin-export==1.8.0', @@ -649,6 +287,7 @@ 'psutil==5.9.8', 'pthread-stubs==0.4', 'ptyprocess==0.7.0', + 'pulseaudio-client==17.0', 'pure_eval==0.2.2', 'pybind11-abi==4', 'pycparser==2.22', @@ -657,10 +296,10 @@ 'pygments==2.18.0', 'pyjwt==2.8.0', 'pynndescent==0.5.12', - 'pyobjc-core==10.2', - 'pyobjc-framework-cocoa==10.2', 'pyparsing==3.1.2', 'pyproject_hooks==1.1.0', + 'pyqt==5.15.9', + 'pyqt5-sip==12.12.2', 'pyro-api==0.1.2', 'pyro-ppl==1.9.0', 'pysocks==1.7.1', @@ -679,6 +318,7 @@ 'pytz==2024.1', 'pyyaml==6.0.1', 'pyzmq==26.0.3', + 'qt-main==5.15.8', 'rapidfuzz==3.9.1', 'rav1e==0.6.6', 're2==2023.09.01', @@ -699,10 +339,12 @@ 'scvi-tools==1.1.2', 'seaborn==0.13.2', 'seaborn-base==0.13.2', + 'secretstorage==3.3.3', 'send2trash==1.8.3', 'session-info==1.0.0', 'setuptools==70.0.0', 'shellingham==1.5.4', + 'sip==6.7.12', 'six==1.16.0', 'sleef==3.5.1', 'snappy==1.2.0', @@ -723,6 +365,7 @@ 'threadpoolctl==3.5.0', 'tinycss2==1.3.0', 'tk==8.6.13', + 'toml==0.10.2', 'tomli==2.0.1', 'tomlkit==0.12.5', 'toolz==0.12.1', @@ -730,7 +373,7 @@ 'tornado==6.4', 'tqdm==4.66.4', 'traitlets==5.14.3', - 'trove-classifiers==2024.5.17', + 'trove-classifiers==2024.5.22', 'typer==0.12.3', 'typer-slim==0.12.3', 'typer-slim-standard==0.12.3', @@ -754,14 +397,300 @@ 'wheel==0.43.0', 'widgetsnbextension==4.0.10', 'xarray==2024.5.0', - 'xattr==1.1.0', + 'xcb-util==0.4.0', + 'xcb-util-image==0.4.0', + 'xcb-util-keysyms==0.4.0', + 'xcb-util-renderutil==0.3.9', + 'xcb-util-wm==0.4.1', + 'xkeyboard-config==2.41', 'xlrd==1.2.0', + 'xorg-kbproto==1.0.7', + 'xorg-libice==1.1.1', + 'xorg-libsm==1.2.4', + 'xorg-libx11==1.8.9', 'xorg-libxau==1.0.11', 'xorg-libxdmcp==1.1.3', + 'xorg-libxext==1.3.4', + 'xorg-libxrender==0.9.11', + 'xorg-renderproto==0.11.1', + 'xorg-xextproto==7.3.0', + 'xorg-xf86vidmodeproto==2.3.1', + 'xorg-xproto==7.0.31', 'xz==5.2.6', 'yaml==0.2.5', 'zeromq==4.3.5', 'zipp==3.17.0', + 'zlib==1.2.13', + 'zstd==1.5.6' + ), + "aarch64" = c( + 'absl-py==2.1.0', + 'anndata==0.10.7', + 'annotated-types==0.7.0', + 'anyio==4.3.0', + 'aom==3.9.0', + 'array-api-compat==1.6', + 'arrow==1.3.0', + 'beautifulsoup4==4.12.3', + 'blessed==1.19.1', + 'blosc==1.21.5', + 'boto3==1.34.111', + 'botocore==1.34.111', + 'brotli==1.1.0', + 'brotli-bin==1.1.0', + 'brotli-python==1.1.0', + 'bzip2==1.0.8', + 'c-ares==1.28.1', + 'ca-certificates==2024.2.2', + 'cachecontrol==0.14.0', + 'cachecontrol-with-filecache==0.14.0', + 'cached-property==1.5.2', + 'cached_property==1.5.2', + 'certifi==2024.2.2', + 'cffi==1.16.0', + 'charset-normalizer==3.3.2', + 'chex==0.1.86', + 'cleo==2.1.0', + 'click==8.1.7', + 'colorama==0.4.6', + 'contextlib2==21.6.0', + 'contourpy==1.2.1', + 'crashtest==0.4.1', + 'croniter==1.3.15', + 'cycler==0.12.1', + 'dateutils==0.6.12', + 'dav1d==1.2.1', + 'deepdiff==7.0.1', + 'distlib==0.3.8', + 'dnspython==2.6.1', + 'docrep==0.3.2', + 'dulwich==0.21.7', + 'email-validator==2.1.1', + 'email_validator==2.1.1', + 'et_xmlfile==1.1.0', + 'etils==1.6.0', + 'exceptiongroup==1.2.0', + 'fastapi==0.111.0', + 'fastapi-cli==0.0.4', + 'filelock==3.14.0', + 'flax==0.8.3', + 'fonttools==4.51.0', + 'freetype==2.12.1', + 'fsspec==2023.12.2', + 'get-annotations==0.1.2', + 'gmp==6.3.0', + 'gmpy2==2.1.5', + 'h11==0.14.0', + 'h2==4.1.0', + 'h5py==3.11.0', + 'hdf5==1.14.3', + 'hpack==4.0.0', + 'httpcore==1.0.5', + 'httpx==0.27.0', + 'hyperframe==6.0.1', + 'icu==73.2', + 'idna==3.7', + 'importlib-metadata==7.1.0', + 'importlib-resources==6.4.0', + 'importlib_metadata==7.1.0', + 'importlib_resources==6.4.0', + 'inquirer==3.1.4', + 'itsdangerous==2.2.0', + 'jaraco.classes==3.4.0', + 'jax==0.4.27', + 'jaxlib==0.4.23', + 'jinja2==3.1.4', + 'jmespath==1.0.1', + 'joblib==1.4.2', + 'keyring==24.3.1', + 'kiwisolver==1.4.5', + 'krb5==1.21.2', + 'lcms2==2.16', + 'legacy-api-wrap==1.4', + 'lerc==4.0.0', + 'libabseil==20240116.2', + 'libaec==1.1.3', + 'libavif16==1.0.4', + 'libblas==3.9.0', + 'libbrotlicommon==1.1.0', + 'libbrotlidec==1.1.0', + 'libbrotlienc==1.1.0', + 'libcblas==3.9.0', + 'libcurl==8.8.0', + 'libcxx==17.0.6', + 'libdeflate==1.20', + 'libedit==3.1.20191231', + 'libev==4.33', + 'libffi==3.4.2', + 'libgfortran==5.0.0', + 'libgfortran5==13.2.0', + 'libgrpc==1.62.2', + 'libhwloc==2.10.0', + 'libiconv==1.17', + 'libjpeg-turbo==3.0.0', + 'liblapack==3.9.0', + 'libllvm14==14.0.6', + 'libnghttp2==1.58.0', + 'libopenblas==0.3.27', + 'libpng==1.6.43', + 'libprotobuf==4.25.3', + 'libre2-11==2023.09.01', + 'libsqlite==3.45.3', + 'libssh2==1.11.0', + 'libtiff==4.6.0', + 'libtorch==2.3.0', + 'libuv==1.48.0', + 'libwebp-base==1.4.0', + 'libxcb==1.15', + 'libxml2==2.12.7', + 'libzlib==1.2.13', + 'lightning==2.0.4', + 'lightning-cloud==0.5.69', + 'lightning-utilities==0.11.2', + 'llvm-openmp==18.1.5', + 'llvmlite==0.42.0', + 'loompy==3.0.6', + 'lz4-c==1.9.4', + 'markdown-it-py==3.0.0', + 'markupsafe==2.1.5', + 'matplotlib-base==3.8.4', + 'mdurl==0.1.2', + 'ml-collections==0.1.1', + 'ml_dtypes==0.4.0', + 'more-itertools==10.2.0', + 'mpc==1.3.1', + 'mpfr==4.2.1', + 'mpmath==1.3.0', + 'msgpack-python==1.0.8', + 'mudata==0.2.3', + 'multipledispatch==0.6.0', + 'munkres==1.1.4', + 'natsort==8.4.0', + 'ncurses==6.5', + 'nest-asyncio==1.6.0', + 'networkx==3.2.1', + 'nomkl==1.0', + 'numba==0.59.1', + 'numpy==1.26.4', + 'numpy_groupies==0.11.1', + 'numpyro==0.15.0', + 'openjpeg==2.5.2', + 'openpyxl==3.1.2', + 'openssl==3.3.0', + 'opt-einsum==3.3.0', + 'opt_einsum==3.3.0', + 'optax==0.2.2', + 'orbax-checkpoint==0.4.4', + 'ordered-set==4.1.0', + 'orjson==3.10.3', + 'packaging==24.0', + 'pandas==2.2.2', + 'patsy==0.5.6', + 'pexpect==4.9.0', + 'pillow==10.3.0', + 'pip==24.0', + 'pkginfo==1.10.0', + 'platformdirs==4.2.2', + 'poetry==1.8.3', + 'poetry-core==1.9.0', + 'poetry-plugin-export==1.8.0', + 'protobuf==4.25.3', + 'psutil==5.9.8', + 'pthread-stubs==0.4', + 'ptyprocess==0.7.0', + 'pybind11-abi==4', + 'pycparser==2.22', + 'pydantic==2.7.1', + 'pydantic-core==2.18.2', + 'pygments==2.18.0', + 'pyjwt==2.8.0', + 'pynndescent==0.5.12', + 'pyparsing==3.1.2', + 'pyproject_hooks==1.1.0', + 'pyro-api==0.1.2', + 'pyro-ppl==1.9.0', + 'pysocks==1.7.1', + 'python==3.9.12', + 'python-build==1.2.1', + 'python-dateutil==2.9.0', + 'python-editor==1.0.4', + 'python-fastjsonschema==2.19.1', + 'python-installer==0.7.0', + 'python-multipart==0.0.9', + 'python-tzdata==2024.1', + 'python_abi==3.9', + 'pytorch==2.3.0', + 'pytorch-lightning==2.2.2', + 'pytz==2024.1', + 'pyyaml==6.0.1', + 'rapidfuzz==3.9.1', + 'rav1e==0.6.6', + 're2==2023.09.01', + 'readchar==4.1.0', + 'readline==8.2', + 'requests==2.32.2', + 'requests-toolbelt==1.0.0', + 'rich==13.7.1', + 's3transfer==0.10.1', + 'scanpy==1.10.1', + 'scikit-learn==1.1.3', + 'scipy==1.13.0', + 'scvelo==0.3.2', + 'scvi-tools==1.1.2', + 'seaborn==0.13.2', + 'seaborn-base==0.13.2', + 'session-info==1.0.0', + 'setuptools==70.0.0', + 'shellingham==1.5.4', + 'six==1.16.0', + 'sleef==3.5.1', + 'snappy==1.2.0', + 'sniffio==1.3.1', + 'soupsieve==2.5', + 'sparse==0.15.3', + 'sqlite==3.45.3', + 'starlette==0.37.2', + 'starsessions==1.3.0', + 'statsmodels==0.14.2', + 'stdlib-list==0.10.0', + 'svt-av1==2.1.0', + 'sympy==1.12', + 'tbb==2021.12.0', + 'tensorstore==0.1.59', + 'threadpoolctl==3.5.0', + 'tk==8.6.13', + 'tomli==2.0.1', + 'tomlkit==0.12.5', + 'toolz==0.12.1', + 'torchmetrics==1.4.0.post0', + 'tqdm==4.66.4', + 'traitlets==5.14.3', + 'trove-classifiers==2024.5.22', + 'typer==0.12.3', + 'typer-slim==0.12.3', + 'typer-slim-standard==0.12.3', + 'types-python-dateutil==2.9.0.20240316', + 'typing-extensions==4.11.0', + 'typing_extensions==4.11.0', + 'tzdata==2024a', + 'ujson==5.10.0', + 'umap-learn==0.5.5', + 'unicodedata2==15.1.0', + 'urllib3==1.26.18', + 'uvicorn==0.29.0', + 'virtualenv==20.26.2', + 'wcwidth==0.2.13', + 'websocket-client==1.8.0', + 'websockets==11.0.3', + 'wheel==0.43.0', + 'xarray==2024.5.0', + 'xattr==1.1.0', + 'xlrd==1.2.0', + 'xorg-libxau==1.0.11', + 'xorg-libxdmcp==1.1.3', + 'xz==5.2.6', + 'yaml==0.2.5', + 'zipp==3.17.0', 'zstd==1.5.6' ) ) diff --git a/inst/envs/M1_20240522.txt b/inst/envs/M1_20240522.txt index 292d62b..aebc55c 100644 --- a/inst/envs/M1_20240522.txt +++ b/inst/envs/M1_20240522.txt @@ -4,21 +4,13 @@ anndata 0.10.7 pyhd8ed1ab_0 conda-forge annotated-types 0.7.0 pyhd8ed1ab_0 conda-forge anyio 4.3.0 pyhd8ed1ab_0 conda-forge aom 3.9.0 h537b5a7_0 conda-forge -appnope 0.1.4 pyhd8ed1ab_0 conda-forge -argon2-cffi 23.1.0 pyhd8ed1ab_0 conda-forge -argon2-cffi-bindings 21.2.0 py39h0f82c59_4 conda-forge array-api-compat 1.6 pyhd8ed1ab_0 conda-forge arrow 1.3.0 pyhd8ed1ab_0 conda-forge -asttokens 2.4.1 pyhd8ed1ab_0 conda-forge -async-lru 2.0.4 pyhd8ed1ab_0 conda-forge -attrs 23.2.0 pyh71513ae_0 conda-forge -babel 2.14.0 pyhd8ed1ab_0 conda-forge beautifulsoup4 4.12.3 pyha770c72_0 conda-forge -bleach 6.1.0 pyhd8ed1ab_0 conda-forge blessed 1.19.1 pyhe4f9e05_2 conda-forge blosc 1.21.5 h9c252e8_1 conda-forge -boto3 1.34.109 pyhd8ed1ab_0 conda-forge -botocore 1.34.110 pyge38_1234567_0 conda-forge +boto3 1.34.111 pyhd8ed1ab_0 conda-forge +botocore 1.34.111 pyge38_1234567_0 conda-forge brotli 1.1.0 hb547adb_1 conda-forge brotli-bin 1.1.0 hb547adb_1 conda-forge brotli-python 1.1.0 py39hb198ff7_1 conda-forge @@ -32,11 +24,10 @@ cached_property 1.5.2 pyha770c72_1 conda-forge certifi 2024.2.2 pyhd8ed1ab_0 conda-forge cffi 1.16.0 py39he153c15_0 conda-forge charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge -chex 0.1.83 pyhd8ed1ab_0 conda-forge +chex 0.1.86 pyhd8ed1ab_0 conda-forge cleo 2.1.0 pyhd8ed1ab_0 conda-forge click 8.1.7 unix_pyh707e725_0 conda-forge colorama 0.4.6 pyhd8ed1ab_0 conda-forge -comm 0.2.2 pyhd8ed1ab_0 conda-forge contextlib2 21.6.0 pyhd8ed1ab_0 conda-forge contourpy 1.2.1 py39h48c5dd5_0 conda-forge crashtest 0.4.1 pyhd8ed1ab_0 conda-forge @@ -44,28 +35,21 @@ croniter 1.3.15 pyhd8ed1ab_0 conda-forge cycler 0.12.1 pyhd8ed1ab_0 conda-forge dateutils 0.6.12 py_0 conda-forge dav1d 1.2.1 hb547adb_0 conda-forge -debugpy 1.8.1 py39hf3050f2_0 conda-forge -decorator 5.1.1 pyhd8ed1ab_0 conda-forge deepdiff 7.0.1 pyhd8ed1ab_0 conda-forge -defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge distlib 0.3.8 pyhd8ed1ab_0 conda-forge -dm-tree 0.1.8 py39heca4154_4 conda-forge dnspython 2.6.1 pyhd8ed1ab_1 conda-forge docrep 0.3.2 pyh44b312d_0 conda-forge dulwich 0.21.7 py39h17cfd9d_0 conda-forge email-validator 2.1.1 pyhd8ed1ab_0 conda-forge email_validator 2.1.1 hd8ed1ab_0 conda-forge -entrypoints 0.4 pyhd8ed1ab_0 conda-forge et_xmlfile 1.1.0 pyhd8ed1ab_0 conda-forge etils 1.6.0 pyhd8ed1ab_0 conda-forge exceptiongroup 1.2.0 pyhd8ed1ab_2 conda-forge -executing 2.0.1 pyhd8ed1ab_0 conda-forge fastapi 0.111.0 pyhd8ed1ab_0 conda-forge fastapi-cli 0.0.4 pyhd8ed1ab_0 conda-forge filelock 3.14.0 pyhd8ed1ab_0 conda-forge flax 0.8.3 pyhd8ed1ab_0 conda-forge fonttools 4.51.0 py39h17cfd9d_0 conda-forge -fqdn 1.5.1 pyhd8ed1ab_0 conda-forge freetype 2.12.1 hadb7bae_2 conda-forge fsspec 2023.12.2 pyhca7485f_0 conda-forge get-annotations 0.1.2 pyhd8ed1ab_0 conda-forge @@ -86,33 +70,13 @@ importlib-resources 6.4.0 pyhd8ed1ab_0 conda-forge importlib_metadata 7.1.0 hd8ed1ab_0 conda-forge importlib_resources 6.4.0 pyhd8ed1ab_0 conda-forge inquirer 3.1.4 pyhd8ed1ab_0 conda-forge -ipykernel 6.29.3 pyh3cd1d5f_0 conda-forge -ipython 8.18.1 pyh707e725_3 conda-forge -ipywidgets 8.1.2 pyhd8ed1ab_1 conda-forge -isoduration 20.11.0 pyhd8ed1ab_0 conda-forge itsdangerous 2.2.0 pyhd8ed1ab_0 conda-forge jaraco.classes 3.4.0 pyhd8ed1ab_1 conda-forge jax 0.4.27 pyhd8ed1ab_0 conda-forge jaxlib 0.4.23 cpu_py39hadd8958_2 conda-forge -jedi 0.19.1 pyhd8ed1ab_0 conda-forge jinja2 3.1.4 pyhd8ed1ab_0 conda-forge jmespath 1.0.1 pyhd8ed1ab_0 conda-forge joblib 1.4.2 pyhd8ed1ab_0 conda-forge -json5 0.9.25 pyhd8ed1ab_0 conda-forge -jsonpointer 2.4 py39h2804cbe_3 conda-forge -jsonschema 4.22.0 pyhd8ed1ab_0 conda-forge -jsonschema-specifications 2023.12.1 pyhd8ed1ab_0 conda-forge -jsonschema-with-format-nongpl 4.22.0 pyhd8ed1ab_0 conda-forge -jupyter-lsp 2.2.5 pyhd8ed1ab_0 conda-forge -jupyter_client 8.6.1 pyhd8ed1ab_0 conda-forge -jupyter_core 5.7.2 py39h2804cbe_0 conda-forge -jupyter_events 0.10.0 pyhd8ed1ab_0 conda-forge -jupyter_server 2.14.0 pyhd8ed1ab_0 conda-forge -jupyter_server_terminals 0.5.3 pyhd8ed1ab_0 conda-forge -jupyterlab 4.2.0 pyhd8ed1ab_1 conda-forge -jupyterlab_pygments 0.3.0 pyhd8ed1ab_1 conda-forge -jupyterlab_server 2.27.1 pyhd8ed1ab_0 conda-forge -jupyterlab_widgets 3.0.10 pyhd8ed1ab_0 conda-forge keyring 24.3.1 py39h2804cbe_0 conda-forge kiwisolver 1.4.5 py39hbd775c9_1 conda-forge krb5 1.21.2 h92f50d5_0 conda-forge @@ -146,7 +110,6 @@ libopenblas 0.3.27 openmp_h6c19121_0 conda-forge libpng 1.6.43 h091b4b1_0 conda-forge libprotobuf 4.25.3 hbfab5d5_0 conda-forge libre2-11 2023.09.01 h7b2c953_2 conda-forge -libsodium 1.0.18 h27ca646_1 conda-forge libsqlite 3.45.3 h091b4b1_0 conda-forge libssh2 1.11.0 h7a5bd25_0 conda-forge libtiff 4.6.0 h07db509_3 conda-forge @@ -165,11 +128,8 @@ loompy 3.0.6 py_0 conda-forge lz4-c 1.9.4 hb7217d7_0 conda-forge markdown-it-py 3.0.0 pyhd8ed1ab_0 conda-forge markupsafe 2.1.5 py39h17cfd9d_0 conda-forge -matplotlib 3.7.3 py39hdf13c20_0 conda-forge -matplotlib-base 3.7.3 py39h6685e7c_0 conda-forge -matplotlib-inline 0.1.7 pyhd8ed1ab_0 conda-forge +matplotlib-base 3.8.4 py39h15359f4_2 conda-forge mdurl 0.1.2 pyhd8ed1ab_0 conda-forge -mistune 3.0.2 pyhd8ed1ab_0 conda-forge ml-collections 0.1.1 pyhd8ed1ab_0 conda-forge ml_dtypes 0.4.0 py39h998126f_1 conda-forge more-itertools 10.2.0 pyhd8ed1ab_0 conda-forge @@ -181,50 +141,38 @@ mudata 0.2.3 pyhd8ed1ab_0 conda-forge multipledispatch 0.6.0 py_0 conda-forge munkres 1.1.4 pyh9f0ad1d_0 conda-forge natsort 8.4.0 pyhd8ed1ab_0 conda-forge -nbclient 0.10.0 pyhd8ed1ab_0 conda-forge -nbconvert-core 7.16.4 pyhd8ed1ab_0 conda-forge -nbformat 5.10.4 pyhd8ed1ab_0 conda-forge ncurses 6.5 hb89a1cb_0 conda-forge nest-asyncio 1.6.0 pyhd8ed1ab_0 conda-forge networkx 3.2.1 pyhd8ed1ab_0 conda-forge nomkl 1.0 h5ca1d4c_0 conda-forge -notebook-shim 0.2.4 pyhd8ed1ab_0 conda-forge numba 0.59.1 py39h278f47c_0 conda-forge -numpy 1.23.1 py39h7df2422_0 conda-forge +numpy 1.26.4 py39h7aa2656_0 conda-forge numpy_groupies 0.11.1 pyhd8ed1ab_0 conda-forge numpyro 0.15.0 pyhd8ed1ab_0 conda-forge openjpeg 2.5.2 h9f1df11_0 conda-forge openpyxl 3.1.2 py39h0f82c59_0 conda-forge -openssl 3.3.0 hfb2fe0b_2 conda-forge +openssl 3.3.0 hfb2fe0b_3 conda-forge opt-einsum 3.3.0 hd8ed1ab_2 conda-forge opt_einsum 3.3.0 pyhc1e730c_2 conda-forge optax 0.2.2 pyhd8ed1ab_0 conda-forge orbax-checkpoint 0.4.4 pyhd8ed1ab_0 conda-forge ordered-set 4.1.0 pyhd8ed1ab_0 conda-forge orjson 3.10.3 py39h0019b8a_0 conda-forge -overrides 7.7.0 pyhd8ed1ab_0 conda-forge packaging 24.0 pyhd8ed1ab_0 conda-forge pandas 2.2.2 py39h998126f_1 conda-forge -pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge -parso 0.8.4 pyhd8ed1ab_0 conda-forge patsy 0.5.6 pyhd8ed1ab_0 conda-forge pexpect 4.9.0 pyhd8ed1ab_0 conda-forge -pickleshare 0.7.5 py_1003 conda-forge pillow 10.3.0 py39h3352c98_0 conda-forge pip 24.0 pyhd8ed1ab_0 conda-forge pkginfo 1.10.0 pyhd8ed1ab_0 conda-forge -pkgutil-resolve-name 1.3.10 pyhd8ed1ab_1 conda-forge platformdirs 4.2.2 pyhd8ed1ab_0 conda-forge poetry 1.8.3 osx_pyh534df25_1 conda-forge poetry-core 1.9.0 pyhd8ed1ab_0 conda-forge poetry-plugin-export 1.8.0 pyhd8ed1ab_0 conda-forge -prometheus_client 0.20.0 pyhd8ed1ab_0 conda-forge -prompt-toolkit 3.0.42 pyha770c72_0 conda-forge protobuf 4.25.3 py39heca4154_0 conda-forge psutil 5.9.8 py39h17cfd9d_0 conda-forge pthread-stubs 0.4 h27ca646_1001 conda-forge ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge -pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge pybind11-abi 4 hd8ed1ab_3 conda-forge pycparser 2.22 pyhd8ed1ab_0 conda-forge pydantic 2.7.1 pyhd8ed1ab_0 conda-forge @@ -232,8 +180,6 @@ pydantic-core 2.18.2 py39h8081647_0 conda-forge pygments 2.18.0 pyhd8ed1ab_0 conda-forge pyjwt 2.8.0 pyhd8ed1ab_1 conda-forge pynndescent 0.5.12 pyhca7485f_0 conda-forge -pyobjc-core 10.2 py39hb167abd_0 conda-forge -pyobjc-framework-cocoa 10.2 py39hb167abd_0 conda-forge pyparsing 3.1.2 pyhd8ed1ab_0 conda-forge pyproject_hooks 1.1.0 pyhd8ed1ab_0 conda-forge pyro-api 0.1.2 pyhd8ed1ab_0 conda-forge @@ -242,10 +188,9 @@ pysocks 1.7.1 pyha2e5f31_6 conda-forge python 3.9.12 h14b404e_1_cpython conda-forge python-build 1.2.1 pyhd8ed1ab_0 conda-forge python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge -python-editor 1.0.4 py_0 conda-forge +python-editor 1.0.4 pyhd8ed1ab_1 conda-forge python-fastjsonschema 2.19.1 pyhd8ed1ab_0 conda-forge python-installer 0.7.0 pyhd8ed1ab_0 conda-forge -python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge python-multipart 0.0.9 pyhd8ed1ab_0 conda-forge python-tzdata 2024.1 pyhd8ed1ab_0 conda-forge python_abi 3.9 4_cp39 conda-forge @@ -253,28 +198,22 @@ pytorch 2.3.0 cpu_generic_py39h21ffa4f_0 conda-fo pytorch-lightning 2.2.2 pyhd8ed1ab_0 conda-forge pytz 2024.1 pyhd8ed1ab_0 conda-forge pyyaml 6.0.1 py39h0f82c59_1 conda-forge -pyzmq 26.0.3 py39he7f0319_0 conda-forge rapidfuzz 3.9.1 py39hbf7db11_0 conda-forge rav1e 0.6.6 h69fbcac_2 conda-forge re2 2023.09.01 h4cba328_2 conda-forge readchar 4.1.0 pyhd8ed1ab_0 conda-forge readline 8.2 h92ec313_1 conda-forge -referencing 0.35.1 pyhd8ed1ab_0 conda-forge requests 2.32.2 pyhd8ed1ab_0 conda-forge requests-toolbelt 1.0.0 pyhd8ed1ab_0 conda-forge -rfc3339-validator 0.1.4 pyhd8ed1ab_0 conda-forge -rfc3986-validator 0.1.1 pyh9f0ad1d_0 conda-forge rich 13.7.1 pyhd8ed1ab_0 conda-forge -rpds-py 0.18.1 py39h0019b8a_0 conda-forge s3transfer 0.10.1 pyhd8ed1ab_0 conda-forge scanpy 1.10.1 pyhd8ed1ab_0 conda-forge -scikit-learn 1.5.0 py39h3c33c8b_0 conda-forge +scikit-learn 1.1.3 py39h57c6424_1 conda-forge scipy 1.13.0 py39h3d5391c_1 conda-forge -scvelo 0.2.5 pyhd8ed1ab_0 conda-forge +scvelo 0.3.2 pyhd8ed1ab_1 conda-forge scvi-tools 1.1.2 pyhd8ed1ab_0 conda-forge seaborn 0.13.2 hd8ed1ab_2 conda-forge seaborn-base 0.13.2 pyhd8ed1ab_2 conda-forge -send2trash 1.8.3 pyh31c8845_0 conda-forge session-info 1.0.0 pyhd8ed1ab_0 conda-forge setuptools 70.0.0 pyhd8ed1ab_0 conda-forge shellingham 1.5.4 pyhd8ed1ab_0 conda-forge @@ -285,7 +224,6 @@ sniffio 1.3.1 pyhd8ed1ab_0 conda-forge soupsieve 2.5 pyhd8ed1ab_1 conda-forge sparse 0.15.3 pyhd8ed1ab_0 conda-forge sqlite 3.45.3 hf2abe2d_0 conda-forge -stack_data 0.6.2 pyhd8ed1ab_0 conda-forge starlette 0.37.2 pyhd8ed1ab_0 conda-forge starsessions 1.3.0 pyhd8ed1ab_0 conda-forge statsmodels 0.14.2 py39h161d348_0 conda-forge @@ -294,40 +232,32 @@ svt-av1 2.1.0 h7bae524_0 conda-forge sympy 1.12 pypyh9d50eac_103 conda-forge tbb 2021.12.0 h420ef59_1 conda-forge tensorstore 0.1.59 py39hffa23a6_0 conda-forge -terminado 0.18.1 pyh31c8845_0 conda-forge threadpoolctl 3.5.0 pyhc1e730c_0 conda-forge -tinycss2 1.3.0 pyhd8ed1ab_0 conda-forge tk 8.6.13 h5083fa2_1 conda-forge tomli 2.0.1 pyhd8ed1ab_0 conda-forge tomlkit 0.12.5 pyha770c72_0 conda-forge toolz 0.12.1 pyhd8ed1ab_0 conda-forge torchmetrics 1.4.0.post0 pyhd8ed1ab_0 conda-forge -tornado 6.4 py39h17cfd9d_0 conda-forge tqdm 4.66.4 pyhd8ed1ab_0 conda-forge traitlets 5.14.3 pyhd8ed1ab_0 conda-forge -trove-classifiers 2024.5.17 pyhd8ed1ab_0 conda-forge +trove-classifiers 2024.5.22 pyhd8ed1ab_0 conda-forge typer 0.12.3 pyhd8ed1ab_0 conda-forge typer-slim 0.12.3 pyhd8ed1ab_0 conda-forge typer-slim-standard 0.12.3 hd8ed1ab_0 conda-forge types-python-dateutil 2.9.0.20240316 pyhd8ed1ab_0 conda-forge typing-extensions 4.11.0 hd8ed1ab_0 conda-forge typing_extensions 4.11.0 pyha770c72_0 conda-forge -typing_utils 0.1.0 pyhd8ed1ab_0 conda-forge tzdata 2024a h0c530f3_0 conda-forge ujson 5.10.0 py39hbf7db11_0 conda-forge umap-learn 0.5.5 py39h2804cbe_1 conda-forge unicodedata2 15.1.0 py39h0f82c59_0 conda-forge -uri-template 1.3.0 pyhd8ed1ab_0 conda-forge urllib3 1.26.18 pyhd8ed1ab_0 conda-forge uvicorn 0.29.0 py39h2804cbe_0 conda-forge virtualenv 20.26.2 pyhd8ed1ab_0 conda-forge wcwidth 0.2.13 pyhd8ed1ab_0 conda-forge -webcolors 1.13 pyhd8ed1ab_0 conda-forge -webencodings 0.5.1 pyhd8ed1ab_2 conda-forge websocket-client 1.8.0 pyhd8ed1ab_0 conda-forge websockets 11.0.3 py39h0f82c59_1 conda-forge wheel 0.43.0 pyhd8ed1ab_1 conda-forge -widgetsnbextension 4.0.10 pyhd8ed1ab_0 conda-forge xarray 2024.5.0 pyhd8ed1ab_0 conda-forge xattr 1.1.0 py39h17cfd9d_0 conda-forge xlrd 1.2.0 pyh9f0ad1d_1 conda-forge @@ -335,6 +265,5 @@ xorg-libxau 1.0.11 hb547adb_0 conda-forge xorg-libxdmcp 1.1.3 h27ca646_0 conda-forge xz 5.2.6 h57fd34a_0 conda-forge yaml 0.2.5 h3422bc3_2 conda-forge -zeromq 4.3.5 hcc0f68c_4 conda-forge zipp 3.17.0 pyhd8ed1ab_0 conda-forge -zstd 1.5.6 hb46c0d2_0 conda-forge \ No newline at end of file +zstd 1.5.6 hb46c0d2_0 conda-forge diff --git a/inst/envs/format_scvelo_deps.R b/inst/envs/format_scvelo_deps.R index c34c868..f28df4d 100644 --- a/inst/envs/format_scvelo_deps.R +++ b/inst/envs/format_scvelo_deps.R @@ -1,7 +1,7 @@ library(dplyr) library(tidyr) -pkg_info <- read.table("Linux_20240523.txt") +pkg_info <- read.table("M1_20240522.txt") pkg_specs <- pkg_info %>% as_tibble() %>% unite("spec", V1, V2, sep = "==") %>%