try Windows environment resolved using micromamba

kevinrue · Aug 23, 2024 · 14b87ed · 14b87ed
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: velociraptor
 Title: Toolkit for Single-Cell Velocity
-Version: 1.15.5
+Version: 1.15.6
 Date: 2024-08-23
 Authors@R: c(person("Kevin", "Rue-Albrecht", role = c("aut", "cre"), email = "kevinrue67@gmail.com", comment = c(ORCID = "0000-0003-3899-3872")),
     person("Aaron", "Lun", role="aut", email="infinite.monkeys.with.keyboards@gmail.com", comment = c(ORCID = '0000-0002-3564-4813')),

diff --git a/R/basilisk.R b/R/basilisk.R
@@ -3,113 +3,165 @@
 .scvelo.dependencies.Windows <- list(
   channels = c("conda-forge", "bioconda"),
   packages = c(
-    'anndata==0.10.8',
+    'anndata==0.9.2',
     'array-api-compat==1.8',
     'brotli==1.1.0',
     'brotli-bin==1.1.0',
+    'brotli-python==1.1.0',
     'bzip2==1.0.8',
     'ca-certificates==2024.7.4',
     'cached-property==1.5.2',
     'cached_property==1.5.2',
     'certifi==2024.7.4',
+    'cffi==1.17.0',
+    'charset-normalizer==3.3.2',
     'click==8.1.7',
     'colorama==0.4.6',
-    'contourpy==1.2.1',
+    'contourpy==1.1.1',
     'cycler==0.12.1',
     'exceptiongroup==1.2.2',
     'fonttools==4.53.1',
     'freetype==2.12.1',
     'get-annotations==0.1.2',
-    'h5py==3.11.0',
-    'hdf5==1.14.3',
+    'gettext==0.22.5',
+    'gettext-tools==0.22.5',
+    'glib==2.80.2',
+    'glib-tools==2.80.2',
+    'gst-plugins-base==1.21.3',
+    'gstreamer==1.21.3',
+    'h2==4.1.0',
+    'h5py==3.9.0',
+    'hdf5==1.14.0',
+    'hpack==4.0.0',
+    'hyperframe==6.0.1',
+    'icu==70.1',
+    'idna==3.7',
+    'importlib-metadata==8.4.0',
+    'importlib-resources==6.4.4',
+    'importlib_resources==6.4.4',
     'intel-openmp==2024.2.1',
     'joblib==1.4.2',
+    'jpeg==9e',
     'kiwisolver==1.4.5',
-    'krb5==1.21.3',
-    'lcms2==2.16',
+    'krb5==1.20.1',
+    'lcms2==2.12',
     'legacy-api-wrap==1.4',
     'lerc==4.0.0',
     'libaec==1.1.3',
+    'libasprintf==0.22.5',
+    'libasprintf-devel==0.22.5',
     'libblas==3.9.0',
     'libbrotlicommon==1.1.0',
     'libbrotlidec==1.1.0',
     'libbrotlienc==1.1.0',
     'libcblas==3.9.0',
-    'libcurl==8.9.1',
+    'libclang==15.0.7',
+    'libclang13==15.0.7',
+    'libcurl==8.1.2',
     'libdeflate==1.21',
     'libexpat==2.6.2',
     'libffi==3.4.2',
+    'libgettextpo==0.22.5',
+    'libgettextpo-devel==0.22.5',
+    'libglib==2.80.2',
     'libhwloc==2.11.1',
     'libiconv==1.17',
-    'libjpeg-turbo==3.0.0',
+    'libintl==0.22.5',
+    'libintl-devel==0.22.5',
+    'libjpeg-turbo==2.1.4',
     'liblapack==3.9.0',
+    'libogg==1.3.5',
     'libpng==1.6.43',
     'libsqlite==3.46.0',
-    'libssh2==1.11.0',
-    'libtiff==4.6.0',
+    'libssh2==1.10.0',
+    'libtiff==4.2.0',
+    'libvorbis==1.3.7',
     'libwebp-base==1.4.0',
     'libxcb==1.16',
     'libxml2==2.12.7',
-    'libzlib==1.3.1',
-    'llvmlite==0.43.0',
+    'libzlib==1.2.13',
+    'llvmlite==0.41.1',
     'loompy==3.0.6',
     'm2w64-gcc-libgfortran==5.3.0',
     'm2w64-gcc-libs==5.3.0',
     'm2w64-gcc-libs-core==5.3.0',
     'm2w64-gmp==6.1.0',
     'm2w64-libwinpthread-git==5.0.0.4634.697f757',
-    'matplotlib-base==3.9.2',
+    'matplotlib==3.7.2',
+    'matplotlib-base==3.7.2',
     'mkl==2024.1.0',
     'msys2-conda-epoch==20160418',
     'munkres==1.1.4',
     'natsort==8.4.0',
-    'networkx==3.3',
-    'numba==0.60.0',
-    'numpy==1.26.4',
-    'numpy_groupies==0.11.2',
-    'openjpeg==2.5.2',
-    'openssl==3.3.1',
+    'networkx==3.1',
+    'numba==0.58.1',
+    'numpy==1.24.4',
+    'numpy_groupies==0.9.22',
+    'olefile==0.47',
+    'openjpeg==2.4.0',
+    'openssl==1.1.1w',
     'packaging==24.1',
-    'pandas==2.2.2',
+    'pandas==2.0.3',
     'patsy==0.5.6',
-    'pillow==10.4.0',
+    'pcre2==10.43',
+    'pillow==8.2.0',
     'pip==24.2',
+    'platformdirs==4.2.2',
+    'ply==3.11',
+    'pooch==1.8.2',
     'pthread-stubs==0.4',
     'pthreads-win32==2.9.1',
+    'pycparser==2.22',
     'pynndescent==0.5.13',
-    'pyparsing==3.1.2',
-    'python==3.12.5',
+    'pyparsing==3.0.9',
+    'pyqt==5.15.7',
+    'pyqt5-sip==12.11.0',
+    'pysocks==1.7.1',
+    'python==3.8.0',
     'python-dateutil==2.9.0',
     'python-tzdata==2024.1',
-    'python_abi==3.12',
+    'python_abi==3.8',
     'pytz==2024.1',
     'qhull==2020.2',
+    'qt-main==5.15.6',
+    'requests==2.32.3',
     'scanpy==1.10.2',
-    'scikit-learn==1.5.1',
-    'scipy==1.14.1',
+    'scikit-learn==1.3.2',
+    'scipy==1.10.1',
     'scvelo==0.2.5',
     'seaborn==0.13.2',
     'seaborn-base==0.13.2',
     'session-info==1.0.0',
     'setuptools==72.2.0',
+    'sip==6.7.12',
     'six==1.16.0',
-    'statsmodels==0.14.2',
+    'sqlite==3.46.0',
+    'statsmodels==0.14.1',
     'stdlib-list==0.10.0',
     'tbb==2021.12.0',
     'threadpoolctl==3.5.0',
     'tk==8.6.13',
+    'toml==0.10.2',
+    'tomli==2.0.1',
+    'tornado==6.4.1',
     'tqdm==4.66.5',
     'typing_extensions==4.12.2',
     'tzdata==2024a',
     'ucrt==10.0.22621.0',
     'umap-learn==0.5.6',
+    'unicodedata2==15.1.0',
+    'urllib3==2.2.2',
     'vc==14.3',
     'vc14_runtime==14.40.33810',
     'vs2015_runtime==14.40.33810',
     'wheel==0.44.0',
+    'win_inet_pton==1.1.0',
     'xorg-libxau==1.0.11',
     'xorg-libxdmcp==1.1.3',
     'xz==5.2.6',
+    'zipp==3.20.0',
+    'zlib==1.2.13',
+    'zstandard==0.23.0',
     'zstd==1.5.6'
   )
 )