update conda environments and workflows to fix issue similar to devel

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: velociraptor
 Title: Toolkit for Single-Cell Velocity
-Version: 1.14.0
-Date: 2024-01-29
+Version: 1.14.1
+Date: 2024-06-12
 Authors@R: c(person("Kevin", "Rue-Albrecht", role = c("aut", "cre"), email = "kevinrue67@gmail.com", comment = c(ORCID = "0000-0003-3899-3872")),
     person("Aaron", "Lun", role="aut", email="infinite.monkeys.with.keyboards@gmail.com", comment = c(ORCID = '0000-0002-3564-4813')),
     person("Charlotte", "Soneson", role="aut", email="charlottesoneson@gmail.com", comment = c(ORCID = '0000-0003-3833-2169')),
@@ -46,7 +46,7 @@ Suggests:
 StagedInstall: no
 License: MIT + file LICENSE
 Encoding: UTF-8
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.1
 URL: https://github.com/kevinrue/velociraptor
 BugReports: https://github.com/kevinrue/velociraptor/issues
 biocViews: SingleCell, GeneExpression, Sequencing, Coverage

NEWS.md

@@ -1,3 +1,10 @@
+# velociraptor 1.14.1
+
+* Update scvelo environment to version `0.3.2` on Linux/Mac.
+* Update scvelo environment to version `0.2.5` on Windows.
+* Use `scanpy.pp.neighbors` to calculate neighbors due to deprecation of automatic neighbor calculation in `scvelo.pp.moments`.
+* Update vignette to document the change of default value for n_neighbors from scvelo (30) to scanpy (15).
+
 # velociraptor 1.13.1
 
 * Robust fallback mechanism using `basiliskRun` option `testload=`.