From 6b6a6365583efaee2477387c97bc7bb8ec220516 Mon Sep 17 00:00:00 2001 From: Ali Khan Date: Thu, 9 Feb 2023 16:09:59 -0500 Subject: [PATCH] Add antsRegistrationSyNQuick.sh to the container (#5) keeps that script and a dependent PrintHeader binary --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index d98d1d6..c29c62a 100644 --- a/Dockerfile +++ b/Dockerfile @@ -21,7 +21,7 @@ cmake /opt/niftyreg-1.3.9/src \ mkdir -p /opt && cd /opt && wget -q https://www.humanconnectome.org/storage/app/media/workbench/workbench-linux64-v1.5.0.zip && unzip workbench-linux64-v1.5.0.zip && rm workbench-linux64-v1.5.0.zip && cd / && \ mkdir -p /opt/ants-2.3.1 && curl -fsSL --retry 5 https://dl.dropbox.com/s/1xfhydsf4t4qoxg/ants-Linux-centos6_x86_64-v2.3.1.tar.gz \ | tar -xz -C /opt/ants-2.3.1 --strip-components 1 && \ -mkdir /opt/ants-2.3.1-minify && for bin in antsRegistration antsApplyTransforms N4BiasFieldCorrection ComposeMultiTransform; do mv /opt/ants-2.3.1/${bin} /opt/ants-2.3.1-minify; done && \ +mkdir /opt/ants-2.3.1-minify && for bin in antsRegistration antsApplyTransforms N4BiasFieldCorrection ComposeMultiTransform antsRegistrationSyNQuick.sh PrintHeader; do mv /opt/ants-2.3.1/${bin} /opt/ants-2.3.1-minify; done && \ rm -rf /opt/ants-2.3.1 && \ mkdir -p /opt/fsl-5.0.11 && curl -fsSL --retry 5 https://fsl.fmrib.ox.ac.uk/fsldownloads/fsl-5.0.11-centos6_64.tar.gz \ | tar -xz -C /opt/fsl-5.0.11 --strip-components 1 && \