From e9ebb223faa5cd831ad5d9c1eb3a2e6fbe254353 Mon Sep 17 00:00:00 2001
From: Jason Kai <tkai@uwo.ca>
Date: Mon, 23 Oct 2023 14:53:51 -0400
Subject: [PATCH 1/3] Update project dependencies

---
 poetry.lock    | 1605 +++++++++++++++++++++++++-----------------------
 pyproject.toml |   10 +-
 2 files changed, 853 insertions(+), 762 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index b385079d..f0769452 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -13,17 +13,22 @@ files = [
 
 [[package]]
 name = "arrow"
-version = "1.2.3"
+version = "1.3.0"
 description = "Better dates & times for Python"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
-    {file = "arrow-1.2.3-py3-none-any.whl", hash = "sha256:5a49ab92e3b7b71d96cd6bfcc4df14efefc9dfa96ea19045815914a6ab6b1fe2"},
-    {file = "arrow-1.2.3.tar.gz", hash = "sha256:3934b30ca1b9f292376d9db15b19446088d12ec58629bc3f0da28fd55fb633a1"},
+    {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"},
+    {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"},
 ]
 
 [package.dependencies]
 python-dateutil = ">=2.7.0"
+types-python-dateutil = ">=2.8.10"
+
+[package.extras]
+doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
+test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"]
 
 [[package]]
 name = "astor"
@@ -56,13 +61,13 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte
 
 [[package]]
 name = "bids-validator"
-version = "1.12.0"
+version = "1.13.1"
 description = "Validator for the Brain Imaging Data Structure"
 optional = false
 python-versions = "*"
 files = [
-    {file = "bids-validator-1.12.0.tar.gz", hash = "sha256:5f9ebd379cdf6d383e983c10539886bf5ea488e4ebf2bc21293125f510893116"},
-    {file = "bids_validator-1.12.0-py2.py3-none-any.whl", hash = "sha256:7936e9f31960cfbfe9af49b33e8d10999d7497d7fcd313d91ea3eda541ae4500"},
+    {file = "bids-validator-1.13.1.tar.gz", hash = "sha256:7205ce4e68fba172215332c786f1ac1665025b702b6dff2b1e158f00a2df9890"},
+    {file = "bids_validator-1.13.1-py2.py3-none-any.whl", hash = "sha256:da6edf5e76ef86c8a63b3fcee1dbfb039a16a9ef63cb0d2d05312c200d4607f7"},
 ]
 
 [[package]]
@@ -182,86 +187,101 @@ files = [
 
 [[package]]
 name = "charset-normalizer"
-version = "3.2.0"
+version = "3.3.1"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 optional = false
 python-versions = ">=3.7.0"
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 ]
 
 [[package]]
@@ -332,75 +352,84 @@ files = [
 
 [[package]]
 name = "contourpy"
-version = "1.1.0"
+version = "1.1.1"
 description = "Python library for calculating contours of 2D quadrilateral grids"
 optional = false
 python-versions = ">=3.8"
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+]
+
+[package.dependencies]
+numpy = {version = ">=1.16,<2.0", markers = "python_version <= \"3.11\""}
 
 [package.extras]
 bokeh = ["bokeh", "selenium"]
-docs = ["furo", "sphinx-copybutton"]
-mypy = ["contourpy[bokeh,docs]", "docutils-stubs", "mypy (==1.2.0)", "types-Pillow"]
+docs = ["furo", "sphinx (>=7.2)", "sphinx-copybutton"]
+mypy = ["contourpy[bokeh,docs]", "docutils-stubs", "mypy (==1.4.1)", "types-Pillow"]
 test = ["Pillow", "contourpy[test-no-images]", "matplotlib"]
 test-no-images = ["pytest", "pytest-cov", "wurlitzer"]
 
 [[package]]
 name = "cookiecutter"
-version = "2.3.0"
+version = "2.4.0"
 description = "A command-line utility that creates projects from project templates, e.g. creating a Python package project from a Python package project template."
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "cookiecutter-2.3.0-py3-none-any.whl", hash = "sha256:7e87944757c6e9f8729cf89a4139b6a35ab4d6dcbc6ae3e7d6360d44ad3ad383"},
-    {file = "cookiecutter-2.3.0.tar.gz", hash = "sha256:942a794981747f6d7f439d6e49d39dc91a9a641283614160c93c474c72c29621"},
+    {file = "cookiecutter-2.4.0-py3-none-any.whl", hash = "sha256:8344663028abc08ec09b912e663636a97e1775bffe973425ec0107431acd390e"},
+    {file = "cookiecutter-2.4.0.tar.gz", hash = "sha256:6d1494e66a784f23324df9d593f3e43af3db4f4b926b9e49e6ff060169fc042a"},
 ]
 
 [package.dependencies]
@@ -415,15 +444,19 @@ rich = "*"
 
 [[package]]
 name = "cycler"
-version = "0.11.0"
+version = "0.12.1"
 description = "Composable style cycles"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
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-    {file = "cycler-0.11.0.tar.gz", hash = "sha256:9c87405839a19696e837b3b818fed3f5f69f16f1eec1a1ad77e043dcea9c772f"},
+    {file = "cycler-0.12.1-py3-none-any.whl", hash = "sha256:85cef7cff222d8644161529808465972e51340599459b8ac3ccbac5a854e0d30"},
+    {file = "cycler-0.12.1.tar.gz", hash = "sha256:88bb128f02ba341da8ef447245a9e138fae777f6a23943da4540077d3601eb1c"},
 ]
 
+[package.extras]
+docs = ["ipython", "matplotlib", "numpydoc", "sphinx"]
+tests = ["pytest", "pytest-cov", "pytest-xdist"]
+
 [[package]]
 name = "datrie"
 version = "0.8.2"
@@ -514,16 +547,17 @@ files = [
 
 [[package]]
 name = "etelemetry"
-version = "0.3.0"
+version = "0.3.1"
 description = "Etelemetry python client API"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "etelemetry-0.3.0-py3-none-any.whl", hash = "sha256:78febd59a22eb53d052d731f10f24139eb2854fd237348fba683dd8616fb4a67"},
+    {file = "etelemetry-0.3.1-py3-none-any.whl", hash = "sha256:a64f09bcd55cbfa5684e4d9fb6d1d6a018ab99d2ea28e638435c4c26e6814a6b"},
 ]
 
 [package.dependencies]
 ci-info = ">=0.2"
+packaging = "*"
 requests = "*"
 
 [package.extras]
@@ -547,13 +581,13 @@ test = ["pytest (>=6)"]
 
 [[package]]
 name = "fastjsonschema"
-version = "2.18.0"
+version = "2.18.1"
 description = "Fastest Python implementation of JSON schema"
 optional = false
 python-versions = "*"
 files = [
-    {file = "fastjsonschema-2.18.0-py3-none-any.whl", hash = "sha256:128039912a11a807068a7c87d0da36660afbfd7202780db26c4aa7153cfdc799"},
-    {file = "fastjsonschema-2.18.0.tar.gz", hash = "sha256:e820349dd16f806e4bd1467a138dced9def4bc7d6213a34295272a6cac95b5bd"},
+    {file = "fastjsonschema-2.18.1-py3-none-any.whl", hash = "sha256:aec6a19e9f66e9810ab371cc913ad5f4e9e479b63a7072a2cd060a9369e329a8"},
+    {file = "fastjsonschema-2.18.1.tar.gz", hash = "sha256:06dc8680d937628e993fa0cd278f196d20449a1adc087640710846b324d422ea"},
 ]
 
 [package.extras]
@@ -561,63 +595,69 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc
 
 [[package]]
 name = "filelock"
-version = "3.12.3"
+version = "3.12.4"
 description = "A platform independent file lock."
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "filelock-3.12.4-py3-none-any.whl", hash = "sha256:08c21d87ded6e2b9da6728c3dff51baf1dcecf973b768ef35bcbc3447edb9ad4"},
+    {file = "filelock-3.12.4.tar.gz", hash = "sha256:2e6f249f1f3654291606e046b09f1fd5eac39b360664c27f5aad072012f8bcbd"},
 ]
 
-[package.dependencies]
-typing-extensions = {version = ">=4.7.1", markers = "python_version < \"3.11\""}
-
 [package.extras]
 docs = ["furo (>=2023.7.26)", "sphinx (>=7.1.2)", "sphinx-autodoc-typehints (>=1.24)"]
 testing = ["covdefaults (>=2.3)", "coverage (>=7.3)", "diff-cover (>=7.7)", "pytest (>=7.4)", "pytest-cov (>=4.1)", "pytest-mock (>=3.11.1)", "pytest-timeout (>=2.1)"]
+typing = ["typing-extensions (>=4.7.1)"]
 
 [[package]]
 name = "fonttools"
-version = "4.42.1"
+version = "4.43.1"
 description = "Tools to manipulate font files"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -824,13 +869,13 @@ pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_ve
 
 [[package]]
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-version = "2.5.27"
+version = "2.5.30"
 description = "File identification library for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
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@@ -849,18 +894,18 @@ files = [
 
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 python-versions = ">=3.8"
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 [package.dependencies]
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 [package.extras]
 all-plugins = ["astropy", "av", "imageio-ffmpeg", "psutil", "tifffile"]
@@ -997,13 +1042,13 @@ files = [
 
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+version = "4.19.1"
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 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -1035,13 +1080,13 @@ referencing = ">=0.28.0"
 
 [[package]]
 name = "jupyter-core"
-version = "5.3.1"
+version = "5.4.0"
 description = "Jupyter core package. A base package on which Jupyter projects rely."
 optional = false
 python-versions = ">=3.8"
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 [package.dependencies]
@@ -1168,24 +1213,20 @@ files = [
 
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+version = "0.4.6"
 description = "Snakebids app for merging multiple label maps."
 optional = false
-python-versions = ">=3.8,<3.11"
-files = []
-develop = false
+python-versions = ">=3.8,<3.12"
+files = [
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-numpy = "^1.22.3"
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-xarray = "^2022.11.0"
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-resolved_reference = "3fe4e0b16cd2534edee0f9fcae05abe5a1b5cbe7"
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+snakebids = ">=0.9.0,<0.10.0"
+xarray = ">=2022.11.0,<2023.0.0"
 
 [[package]]
 name = "lazy-loader"
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 python-versions = ">=3.8"
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 ]
 
 [package.dependencies]
@@ -1485,11 +1522,12 @@ cycler = ">=0.10"
 fonttools = ">=4.22.0"
 importlib-resources = {version = ">=3.2.0", markers = "python_version < \"3.10\""}
 kiwisolver = ">=1.0.1"
-numpy = ">=1.20"
+numpy = ">=1.20,<2"
 packaging = ">=20.0"
 pillow = ">=6.2.0"
-pyparsing = ">=2.3.1,<3.1"
+pyparsing = ">=2.3.1"
 python-dateutil = ">=2.7"
+setuptools_scm = ">=7"
 
 [[package]]
 name = "mdurl"
@@ -1628,13 +1666,13 @@ test = ["coverage", "pytest (!=5.3.4)", "pytest (<7)", "pytest-cov", "pytest-doc
 
 [[package]]
 name = "nilearn"
-version = "0.10.1"
+version = "0.10.2"
 description = "Statistical learning for neuroimaging in Python"
 optional = false
 python-versions = ">=3.7"
 files = [
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+    {file = "nilearn-0.10.2.tar.gz", hash = "sha256:03ef4da72d1ae87b2e3f28b771dc7e05464aa179626e57c300595625a8654273"},
 ]
 
 [package.dependencies]
@@ -1649,10 +1687,11 @@ scikit-learn = ">=1.0.0"
 scipy = ">=1.6.0"
 
 [package.extras]
-dev = ["nilearn[doc,plotly,plotting,test]"]
-doc = ["black", "coverage", "flake8", "flake8-docstrings", "furo", "memory-profiler", "mkl", "myst-parser", "nilearn[plotly]", "numpydoc", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx-gallery", "sphinxcontrib-bibtex", "sphinxext-opengraph"]
+dev = ["black", "blacken-docs", "codespell", "flake8", "flake8-docstrings", "flake8-functions", "flake8-use-fstring", "flynt", "isort", "nilearn[doc,plotly,plotting,test]", "pre-commit", "tomli"]
+doc = ["furo", "memory-profiler", "myst-parser", "nilearn[plotly]", "numpydoc", "ruamel-yaml", "sphinx (<7.2.0)", "sphinx-copybutton", "sphinx-design", "sphinx-gallery", "sphinxcontrib-bibtex", "sphinxext-opengraph"]
 min = ["joblib (==1.0.0)", "nibabel (==3.2.0)", "numpy (==1.19.0)", "pandas (==1.1.5)", "scikit-learn (==1.0.0)", "scipy (==1.6.0)"]
 plotly = ["kaleido", "plotly"]
+plotmin = ["matplotlib (==3.3.0)"]
 plotting = ["matplotlib (>=3.3.0)"]
 test = ["coverage", "pytest (>=6.0.0)", "pytest-cov"]
 
@@ -1725,18 +1764,18 @@ tests = ["codecov", "pytest", "pytest-cov"]
 
 [[package]]
 name = "niworkflows"
-version = "1.8.1"
+version = "1.9.0"
 description = "NeuroImaging Workflows provides processing tools for magnetic resonance images of the brain."
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "niworkflows-1.9.0-py3-none-any.whl", hash = "sha256:a2546f323768f36f96aa1cda1364d1aa42e93d113c2b99e16bf4837e0f90b62f"},
+    {file = "niworkflows-1.9.0.tar.gz", hash = "sha256:e7ce6b250c7a15dd0dd927d8c181779cc69687d23b38fb5b26ce07aeed310a61"},
 ]
 
 [package.dependencies]
 attrs = "*"
-importlib-resources = {version = "*", markers = "python_version < \"3.9\""}
+importlib-resources = {version = ">=5.7", markers = "python_version < \"3.11\""}
 jinja2 = "*"
 looseversion = "*"
 matplotlib = ">=3.4.2"
@@ -1759,7 +1798,7 @@ transforms3d = "*"
 
 [package.extras]
 all = ["niworkflows[doc,pointclouds,style,tests]"]
-doc = ["furo (>=2021.10.09,<2021.11.0)", "pydot (>=1.2.3)", "pydotplus", "sphinx (>=4.0,<5.0)", "sphinxcontrib-apidoc", "sphinxcontrib-napoleon"]
+doc = ["furo", "pydot (>=1.2.3)", "pydotplus", "sphinx", "sphinxcontrib-apidoc", "sphinxcontrib-napoleon"]
 docs = ["niworkflows[doc]"]
 pointclouds = ["pyntcloud"]
 style = ["flake8 (>=3.7.0)"]
@@ -1781,13 +1820,13 @@ setuptools = "*"
 
 [[package]]
 name = "num2words"
-version = "0.5.12"
+version = "0.5.13"
 description = "Modules to convert numbers to words. Easily extensible."
 optional = false
 python-versions = "*"
 files = [
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-    {file = "num2words-0.5.12.tar.gz", hash = "sha256:7e7c0b0f080405aa3a1dd9d32b1ca90b3bf03bab17b8e54db05e1b78301a0988"},
+    {file = "num2words-0.5.13-py3-none-any.whl", hash = "sha256:39e662c663f0a7e15415431ea68eb3dc711b49e3b776d93403e1da0a219ca4ee"},
+    {file = "num2words-0.5.13.tar.gz", hash = "sha256:a3064716fbbf90d75c449450cebfbc73a6a13e63b2531d09bdecc3ab1a2209cf"},
 ]
 
 [package.dependencies]
@@ -1832,13 +1871,13 @@ files = [
 
 [[package]]
 name = "packaging"
-version = "23.1"
+version = "23.2"
 description = "Core utilities for Python packages"
 optional = false
 python-versions = ">=3.7"
 files = [
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-    {file = "packaging-23.1.tar.gz", hash = "sha256:a392980d2b6cffa644431898be54b0045151319d1e7ec34f0cfed48767dd334f"},
+    {file = "packaging-23.2-py3-none-any.whl", hash = "sha256:8c491190033a9af7e1d931d0b5dacc2ef47509b34dd0de67ed209b5203fc88c7"},
+    {file = "packaging-23.2.tar.gz", hash = "sha256:048fb0e9405036518eaaf48a55953c750c11e1a1b68e0dd1a9d62ed0c092cfc5"},
 ]
 
 [[package]]
@@ -2009,24 +2048,24 @@ files = [
 
 [[package]]
 name = "plac"
-version = "1.3.5"
+version = "1.4.0"
 description = "The smartest command line arguments parser in the world"
 optional = false
 python-versions = "*"
 files = [
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-    {file = "plac-1.3.5.tar.gz", hash = "sha256:38bdd864d0450fb748193aa817b9c458a8f5319fbf97b2261151cfc0a5812090"},
+    {file = "plac-1.4.0-py2.py3-none-any.whl", hash = "sha256:6a108d343d61d2b8e770eddd6232dde834012bc005734a688547c482ff65b21a"},
+    {file = "plac-1.4.0.tar.gz", hash = "sha256:334864447ab7c43d2a0700d9387f30cff4843a67c02e65b29854705922b43357"},
 ]
 
 [[package]]
 name = "platformdirs"
-version = "3.10.0"
+version = "3.11.0"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "platformdirs-3.10.0-py3-none-any.whl", hash = "sha256:d7c24979f292f916dc9cbf8648319032f551ea8c49a4c9bf2fb556a02070ec1d"},
-    {file = "platformdirs-3.10.0.tar.gz", hash = "sha256:b45696dab2d7cc691a3226759c0d3b00c47c8b6e293d96f6436f733303f77f6d"},
+    {file = "platformdirs-3.11.0-py3-none-any.whl", hash = "sha256:e9d171d00af68be50e9202731309c4e658fd8bc76f55c11c7dd760d023bda68e"},
+    {file = "platformdirs-3.11.0.tar.gz", hash = "sha256:cf8ee52a3afdb965072dcc652433e0c7e3e40cf5ea1477cd4b3b1d2eb75495b3"},
 ]
 
 [package.extras]
@@ -2106,25 +2145,27 @@ dot = ["pydot (>=1.2.0)"]
 
 [[package]]
 name = "psutil"
-version = "5.9.5"
+version = "5.9.6"
 description = "Cross-platform lib for process and system monitoring in Python."
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
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-numpy = ">=1.17.3"
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 scipy = ">=1.5.0"
 threadpoolctl = ">=2.0.0"
 
@@ -2871,133 +2909,168 @@ test = ["asv", "gmpy2", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeo
 
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+
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 [[package]]
@@ -3034,24 +3107,24 @@ webhdfs = ["requests"]
 
 [[package]]
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+version = "5.0.1"
 description = "A pure Python implementation of a sliding window memory map manager"
 optional = false
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 [[package]]
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+version = "0.9.3"
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 optional = false
 python-versions = ">=3.7,<3.12"
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 [package.dependencies]
@@ -3089,12 +3162,12 @@ toml = ">=0.10.2,<0.11.0"
 
 [[package]]
 name = "snakemake"
-version = "7.32.3"
+version = "7.32.4"
 description = "Workflow management system to create reproducible and scalable data analyses"
 optional = false
 python-versions = ">=3.7"
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 [package.dependencies]
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 [[package]]
 name = "sqlalchemy"
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 ]
 
 [package.dependencies]
@@ -3261,16 +3342,17 @@ widechars = ["wcwidth"]
 
 [[package]]
 name = "templateflow"
-version = "23.0.0"
+version = "23.1.0"
 description = "TemplateFlow Python Client - TemplateFlow is the Zone of neuroimaging templates."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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+    {file = "templateflow-23.1.0.tar.gz", hash = "sha256:11fdc128fa4915ba80cd60b59d595fd405035301573682595676a5d91e19a016"},
 ]
 
 [package.dependencies]
+importlib-resources = {version = ">=5.7", markers = "python_version < \"3.11\""}
 pybids = ">=0.15.2"
 requests = "*"
 tqdm = "*"
@@ -3405,18 +3487,18 @@ telegram = ["requests"]
 
 [[package]]
 name = "traitlets"
-version = "5.9.0"
+version = "5.11.2"
 description = "Traitlets Python configuration system"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
 docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
-test = ["argcomplete (>=2.0)", "pre-commit", "pytest", "pytest-mock"]
+test = ["argcomplete (>=3.0.3)", "mypy (>=1.5.1)", "pre-commit", "pytest (>=7.0,<7.5)", "pytest-mock", "pytest-mypy-testing"]
 
 [[package]]
 name = "traits"
@@ -3476,15 +3558,26 @@ files = [
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 ]
 
+[[package]]
+name = "types-python-dateutil"
+version = "2.8.19.14"
+description = "Typing stubs for python-dateutil"
+optional = false
+python-versions = "*"
+files = [
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+]
+
 [[package]]
 name = "typing-extensions"
-version = "4.7.1"
-description = "Backported and Experimental Type Hints for Python 3.7+"
+version = "4.8.0"
+description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [[package]]
@@ -3500,13 +3593,13 @@ files = [
 
 [[package]]
 name = "urllib3"
-version = "2.0.6"
+version = "2.0.7"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "urllib3-2.0.6-py3-none-any.whl", hash = "sha256:7a7c7003b000adf9e7ca2a377c9688bbc54ed41b985789ed576570342a375cd2"},
-    {file = "urllib3-2.0.6.tar.gz", hash = "sha256:b19e1a85d206b56d7df1d5e683df4a7725252a964e3993648dd0fb5a1c157564"},
+    {file = "urllib3-2.0.7-py3-none-any.whl", hash = "sha256:fdb6d215c776278489906c2f8916e6e7d4f5a9b602ccbcfdf7f016fc8da0596e"},
+    {file = "urllib3-2.0.7.tar.gz", hash = "sha256:c97dfde1f7bd43a71c8d2a58e369e9b2bf692d1334ea9f9cae55add7d0dd0f84"},
 ]
 
 [package.extras]
@@ -3517,13 +3610,13 @@ zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.24.4"
+version = "20.24.6"
 description = "Virtual Python Environment builder"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "virtualenv-20.24.4-py3-none-any.whl", hash = "sha256:29c70bb9b88510f6414ac3e55c8b413a1f96239b6b789ca123437d5e892190cb"},
-    {file = "virtualenv-20.24.4.tar.gz", hash = "sha256:772b05bfda7ed3b8ecd16021ca9716273ad9f4467c801f27e83ac73430246dca"},
+    {file = "virtualenv-20.24.6-py3-none-any.whl", hash = "sha256:520d056652454c5098a00c0f073611ccbea4c79089331f60bf9d7ba247bb7381"},
+    {file = "virtualenv-20.24.6.tar.gz", hash = "sha256:02ece4f56fbf939dbbc33c0715159951d6bf14aaf5457b092e4548e1382455af"},
 ]
 
 [package.dependencies]
@@ -3645,13 +3738,13 @@ viz = ["matplotlib", "nc-time-axis", "seaborn"]
 
 [[package]]
 name = "yamlfix"
-version = "1.14.0"
+version = "1.15.0"
 description = "A simple opionated yaml formatter that keeps your comments!"
 optional = false
 python-versions = ">=3.7.2"
 files = [
-    {file = "yamlfix-1.14.0-py3-none-any.whl", hash = "sha256:e62d26a6f79bdaf8c2f23aeff7d6eddde4442c40b349c864cf15aa71794d37b1"},
-    {file = "yamlfix-1.14.0.tar.gz", hash = "sha256:1ab4640ae25a693d5ec1de718cd2145a9d7fd3b0094a16d5790b02ff736f87fe"},
+    {file = "yamlfix-1.15.0-py3-none-any.whl", hash = "sha256:22095f0aaa9a6c07b279385b3b567b1553d6cb12d6f2c41dd2bb0a4361efc70d"},
+    {file = "yamlfix-1.15.0.tar.gz", hash = "sha256:6aa50eac3b308ef8d31f5e0d0c36aa5c5bd46de4d8f943ae6cb62df60e8e7e72"},
 ]
 
 [package.dependencies]
@@ -3677,20 +3770,20 @@ pyyaml = ">=6.0,<7.0"
 
 [[package]]
 name = "zipp"
-version = "3.16.2"
+version = "3.17.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"},
-    {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"},
+    {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"},
+    {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
 testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.8, <3.11"
-content-hash = "4f554ec4530bfe8b0562247093dfa6d5ee95c1d5f5a4fa4fd219980db5a350cb"
+content-hash = "49b9a5bcdd4ec8d8cd80801f98d6cf53b94bad705b74a232cf789153eac26451"
diff --git a/pyproject.toml b/pyproject.toml
index b4349361..a0d4c9d0 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -11,9 +11,7 @@ authors = [
 ]
 readme = "README.md"
 documentation = "https://scattr.readthedocs.io"
-packages = [
-    { include = "scattr" }
-]
+packages = [{ include = "scattr" }]
 
 [tool.poetry.dependencies]
 python = ">=3.8, <3.11"
@@ -22,7 +20,7 @@ nibabel = "^3.2.2"
 nilearn = "^0.10.0"
 numpy = "^1.22.3"
 scipy = "^1.8.0"
-labelmerge = {git = "https://github.com/khanlab/labelmerge.git", rev = "v0.4.5"}
+labelmerge = "^v0.4.6"
 matplotlib = "^3.7.1"
 niworkflows = "^1.7.9"
 pygments = "^2.15.1"
@@ -70,7 +68,7 @@ test = [
     "test_dwi",
     "test_labelmerge",
     "test_skip_labelmerge",
-    "test_sessions"
+    "test_sessions",
 ]
 
 [tool.poe.tasks.test_base]
@@ -156,7 +154,7 @@ line-length = 79
 
 [tool.ruff]
 line-length = 79
-builtins = [ "snakemake" ]
+builtins = ["snakemake"]
 
 [tool.snakefmt]
 line_length = 79

From 153b710c9d5ef4b2a3cc43be87b2c30d12f15a14 Mon Sep 17 00:00:00 2001
From: Jason Kai <tkai@uwo.ca>
Date: Mon, 23 Oct 2023 14:54:00 -0400
Subject: [PATCH 2/3] Update actions dependencies

---
 .github/workflows/assign_reviewers.yml | 2 +-
 .github/workflows/bump_version.yml     | 4 ++--
 .github/workflows/deploy.yml           | 2 +-
 .github/workflows/release.yml          | 4 ++--
 .github/workflows/test.yml             | 4 ++--
 5 files changed, 8 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/assign_reviewers.yml b/.github/workflows/assign_reviewers.yml
index b2a9b16e..5b5b8e57 100644
--- a/.github/workflows/assign_reviewers.yml
+++ b/.github/workflows/assign_reviewers.yml
@@ -5,4 +5,4 @@ on:
     types: [opened, ready_for_review]
 jobs:
   assign-reviewer:
-    uses: khanlab/actions/.github/workflows/workflow-pr_task-assignReviewer.yml@v0.2.1
+    uses: khanlab/actions/.github/workflows/workflow-pr_task-assignReviewer.yml@v0.3.0
diff --git a/.github/workflows/bump_version.yml b/.github/workflows/bump_version.yml
index 4e30199e..d675a9b2 100644
--- a/.github/workflows/bump_version.yml
+++ b/.github/workflows/bump_version.yml
@@ -6,6 +6,6 @@ on:
 jobs:
   bump-version:
     if: github.event.pull_request.merged == true
-    uses: khanlab/actions/.github/workflows/workflow-version_task-semverGithub.yml@v0.2.1
+    uses: khanlab/actions/.github/workflows/workflow-version_task-semverGithub.yml@v0.3.0
     secrets:
-      BP-PAT: ${{ secrets.BP_PAT_TOKEN }}
+      BP_PAT: ${{ secrets.BP_PAT_TOKEN }}
diff --git a/.github/workflows/deploy.yml b/.github/workflows/deploy.yml
index 7ee0f08e..a611e705 100644
--- a/.github/workflows/deploy.yml
+++ b/.github/workflows/deploy.yml
@@ -6,7 +6,7 @@ on:
     tags: [v*]
 jobs:
   deploy_docker:
-    uses: khanlab/actions/.github/workflows/workflow-release_task-deployDocker.yml@v0.2.1
+    uses: khanlab/actions/.github/workflows/workflow-release_task-deployDocker.yml@v0.3.0
     with:
       maximize_space: true
     secrets:
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index ff1005bb..3b78f348 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -8,9 +8,9 @@ on:
         required: false
 jobs:
   release_package:
-    uses: khanlab/actions/.github/workflows/workflow-release_task-publishGithub.yml@v0.2.1
+    uses: khanlab/actions/.github/workflows/workflow-release_task-publishGithub.yml@v0.3.0
     with:
       comments: ${{ github.event.inputs.comments }}
       pipeline-description: true
     secrets:
-      BP-PAT: ${{ secrets.BP_PAT_TOKEN }}
+      BP_PAT: ${{ secrets.BP_PAT_TOKEN }}
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 60fcf745..60e326c8 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Setup Python environment
-        uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.2.1
+        uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.3.0
         with:
           python-version: "3.10"
       - name: yamlfix
@@ -33,7 +33,7 @@ jobs:
         python-version: ["3.8", "3.9", "3.10"]
     steps:
       - name: Setup Python environments
-        uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.2.1
+        uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.3.0
         with:
           python-version: ${{ matrix.python-version }}
           install-library: true

From d2248ebb3004ead039fc963ee0117be89687e6ce Mon Sep 17 00:00:00 2001
From: Jason Kai <tkai@uwo.ca>
Date: Mon, 23 Oct 2023 14:54:41 -0400
Subject: [PATCH 3/3] Update to anticipated docker release version

---
 scattr/config/snakebids.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scattr/config/snakebids.yml b/scattr/config/snakebids.yml
index 90132051..b5b8c802 100644
--- a/scattr/config/snakebids.yml
+++ b/scattr/config/snakebids.yml
@@ -273,6 +273,6 @@ freesurfer:
 
 # Containers
 singularity:
-  scattr: "docker://khanlab/scattr:v0.2.1"
+  scattr: "docker://khanlab/scattr:v0.3.2"
 
 fs_license: /path/to/fs/license