.travis.yml

# Reference: http://docs.travis-ci.com/user/languages/perl/

dist: xenial
sudo: false
language: perl
perl: "5.26"

branches:
  only:
    - master

addons:
  apt:
    packages:
    - libmysqlclient-dev
    - build-essential
    - cpanminus
    - samtools
    - tabix
    - unzip
    - rsync
    - wget
    - gzip

env:
  - VEP_VERSION=95.3

before_install:
  - cpanm --notest LWP::Simple DBI DBD::mysql Archive::Zip Archive::Extract HTTP::Tiny Test::Simple

install:
  - wget -qP $HOME https://github.com/Ensembl/ensembl-vep/archive/release/${VEP_VERSION}.tar.gz
  - tar -zxf $HOME/${VEP_VERSION}.tar.gz -C $HOME
  - mv $HOME/ensembl-vep-release-${VEP_VERSION} $HOME/vep
  # Add a delay between downloads from api.github.com, to prevent rate limiting
  - perl -i -pe '$_.="  sleep 12;\n" if(/^sub download_to_file/);' $HOME/vep/INSTALL.pl
  - perl $HOME/vep/INSTALL.pl --NO_TEST --NO_HTSLIB --NO_UPDATE --PREFER_BIN --AUTO a --DESTDIR $HOME/vep
  - rsync rsync://ftp.ensembl.org/ensembl/pub/release-95/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.chromosome.13.fa.gz data/
  - gzip -d data/Homo_sapiens.GRCh38.dna.chromosome.13.fa.gz

script:
  - perl tests/vcf2maf.t