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linting not working with samples, but will do later
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Addimator committed Aug 15, 2024
1 parent c01b09e commit 934504f
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Showing 2 changed files with 5 additions and 2 deletions.
2 changes: 1 addition & 1 deletion config/config.yaml
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Expand Up @@ -14,7 +14,7 @@ resources:
scatter_items: 100

# Path of the sample file
sample_path: "config/sample.tsv"
sample_path: "/projects/koesterlab/rossi-ips-dmr/config/sample.tsv"

# Name of base experiment
ref_sample: "BC01-ref-sorted"
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5 changes: 4 additions & 1 deletion config/sample.tsv
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@@ -1,2 +1,5 @@
name path sequencer
name_of_experiment_1 path_of_data_1 Nanopore/Illumina/PacBio
BC01-ref-sorted /projects/koesterlab/rossi-ips-dmr/resources/alignments/BC01-ref-sorted.bam Nanopore
BC02-ref-sorted /projects/koesterlab/rossi-ips-dmr/resources/alignments/BC02-ref-sorted.bam Nanopore
BC03-ref-sorted /projects/koesterlab/rossi-ips-dmr/resources/alignments/BC03-ref-sorted.bam Nanopore
BC04-ref-sorted /projects/koesterlab/rossi-ips-dmr/resources/alignments/BC04-ref-sorted.bam Nanopore

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