diff --git a/.github/workflows/pipeline_sra.yaml b/.github/workflows/pipeline_sra.yaml index 3acc6b02c..002c7e2fd 100644 --- a/.github/workflows/pipeline_sra.yaml +++ b/.github/workflows/pipeline_sra.yaml @@ -92,7 +92,7 @@ jobs: nextflow run -r ${{ github.sha }} ${{github.repository}} \ --skip_assembly_download \ --skip_outgroup_download \ - --sqlite ${SQLITE_DB_PATH} \ + --sqlite results/ncbimeta_db/update/latest/output/database/yersinia_pestis_db.sqlite \ --sqlite_select_command_sra "SELECT BioSampleAccession,SRARunAccession,SRALibraryLayout,SRAFileURL FROM Master WHERE (SRARunAccession = 'SRR1048902' OR SRARunAccession = 'SRR1048905')" \ --outdir test \ ${GH_RESOURCES} \