From 27178fcef6f687881482ed036e00d40c3febbbba Mon Sep 17 00:00:00 2001
From: Katherine Eaton <ktmeaton@gmail.com>
Date: Fri, 6 Mar 2020 15:13:22 -0500
Subject: [PATCH] add modeltest-ng to requirements

---
 README.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index b59728499..6dc03c376 100644
--- a/README.md
+++ b/README.md
@@ -5,7 +5,8 @@ Phylogeography of Yersinia pestis
 **Workflow:** NextFlow  
 **Database:** NCBImeta, sqlite3 (CLI)  
 **Alignment:** snippy  
-**Masking, etc.:** dustmasker, mummer  
+**Masking, etc.:** dustmasker, mummer
+**Model Selection:** modeltest-ng  
 
 ### Conda Environment
 Create a conda environment with the required dependencies  
@@ -81,7 +82,6 @@ nextflow run pipeline.nf \
 ```
 nextflow run pipeline.nf \
   --sqlite results/ncbimeta_db/update/latest/output/database/yersinia_pestis_db.sqlite \
-  --ncbimeta_annot annot.txt \
   --max_datasets 1 \
   -resume
 ```