🍱 Added df of BioSample attributes #100
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_EVENT_NAME: ${{ github.event_name }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9"] | |
| timeout-minutes: 15 | |
| steps: | |
| - name: Checkout main | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Checkout lndocs | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: laminlabs/lndocs | |
| ssh-key: ${{ secrets.READ_LNDOCS }} | |
| path: lndocs | |
| ref: main | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| cache-dependency-path: ".github/workflows/build.yml" # See dependencies below | |
| - name: Cache pre-commit | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: pre-commit-${{ runner.os }}-${{ hashFiles('.pre-commit-config.yaml') }} | |
| - name: Cache postgres | |
| id: cache-postgres | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/postgres.tar | |
| key: cache-postgres-0 | |
| - name: Cache postgres miss | |
| if: steps.cache-postgres.outputs.cache-hit != 'true' | |
| run: docker pull postgres:latest && docker image save postgres:latest --output ~/postgres.tar | |
| - name: Cache postgres use | |
| if: steps.cache-postgres.outputs.cache-hit == 'true' | |
| run: docker image load --input ~/postgres.tar | |
| - name: Install Python dependencies | |
| run: | | |
| python -m pip install -U pip | |
| pip install -U laminci | |
| - name: Install apt-get dependencies | |
| run: | | |
| sudo apt-get -y install graphviz | |
| sudo apt-get install libpq-dev | |
| - name: Configure AWS | |
| uses: aws-actions/configure-aws-credentials@v2 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: eu-central-1 | |
| - run: nox -s install | |
| - run: nox -s build | |
| - name: Deploy docs | |
| if: matrix.python-version == '3.9' | |
| id: netlify | |
| uses: nwtgck/actions-netlify@v1.2 | |
| with: | |
| publish-dir: "_build/html" | |
| production-deploy: ${{ github.event_name == 'push' }} | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| enable-commit-comment: false | |
| env: | |
| NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }} | |
| NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }} |