diff --git a/docs/demultiplexing.rst b/docs/demultiplexing.rst index a8b61671..b9846675 100644 --- a/docs/demultiplexing.rst +++ b/docs/demultiplexing.rst @@ -173,9 +173,9 @@ demuxEM inputs - "XIST" - * - demuxEM_version - - demuxEM version to use. Currently only support "0.1.4". - - "0.1.4" - - "0.1.4" + - demuxEM version to use. Currently only support "0.1.5". + - "0.1.5" + - "0.1.5" * - demuxEM_num_cpu - demuxEM parameter. Number of CPUs to request for demuxEM per pair. - 8 @@ -202,9 +202,9 @@ souporcell inputs - Example - Default * - souporcell_version - - souporcell version to use. Available versions: "2020.06", "2020.03". - - "2020.06" - - "2020.06" + - souporcell version to use. Available versions: "2020.07", "2020.03". + - "2020.07" + - "2020.07" * - souporcell_de_novo_mode - | souporcell parameter. | If ``true``, run souporcell in de novo mode without reference genotypes; and if a reference genotype vcf file is provided in the sample sheet, use it **only** for matching the cluster labels computed by souporcell. @@ -212,7 +212,7 @@ souporcell inputs - true - true * - souporcell_num_clusters - - | souporcell parameter. Number of expected clusters when doing clustering. + - | souporcell parameter. Number of expected clusters when doing clustering. | **This needs to be set when running souporcell.** - 8 -