From 2347ffa4710ecd27f757b356049139b97be9476d Mon Sep 17 00:00:00 2001
From: Anders Sune Pedersen <37172585+asp8200@users.noreply.github.com>
Date: Sun, 23 Jul 2023 12:37:54 +0200
Subject: [PATCH] Update tiddit to v3.6.1 (#3663)

---
 modules/nf-core/tiddit/cov/main.nf       | 6 +++---
 modules/nf-core/tiddit/sv/main.nf        | 6 +++---
 tests/modules/nf-core/tiddit/sv/test.yml | 8 ++++----
 3 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/modules/nf-core/tiddit/cov/main.nf b/modules/nf-core/tiddit/cov/main.nf
index 647f35a2d81..f4b1d675928 100644
--- a/modules/nf-core/tiddit/cov/main.nf
+++ b/modules/nf-core/tiddit/cov/main.nf
@@ -2,10 +2,10 @@ process TIDDIT_COV {
     tag "$meta.id"
     label 'process_low'
 
-    conda "bioconda::tiddit=3.3.2"
+    conda "bioconda::tiddit=3.6.1"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/tiddit:3.3.2--py310hc2b7f4b_0' :
-        'biocontainers/tiddit:3.3.2--py310hc2b7f4b_0' }"
+        'https://depot.galaxyproject.org/singularity/tiddit:3.6.1--py38h24c8ff8_0' :
+        'biocontainers/tiddit:3.6.1--py38h24c8ff8_0' }"
 
     input:
     tuple val(meta), path(input)
diff --git a/modules/nf-core/tiddit/sv/main.nf b/modules/nf-core/tiddit/sv/main.nf
index 1ebc8565f4a..67a0670dbc3 100644
--- a/modules/nf-core/tiddit/sv/main.nf
+++ b/modules/nf-core/tiddit/sv/main.nf
@@ -2,10 +2,10 @@ process TIDDIT_SV {
     tag "$meta.id"
     label 'process_medium'
 
-    conda "bioconda::tiddit=3.3.2"
+    conda "bioconda::tiddit=3.6.1"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/tiddit:3.3.2--py310hc2b7f4b_0' :
-        'biocontainers/tiddit:3.3.2--py310hc2b7f4b_0' }"
+        'https://depot.galaxyproject.org/singularity/tiddit:3.6.1--py38h24c8ff8_0' :
+        'biocontainers/tiddit:3.6.1--py38h24c8ff8_0' }"
 
     input:
     tuple val(meta), path(input), path(input_index)
diff --git a/tests/modules/nf-core/tiddit/sv/test.yml b/tests/modules/nf-core/tiddit/sv/test.yml
index f371f602004..586d1070389 100644
--- a/tests/modules/nf-core/tiddit/sv/test.yml
+++ b/tests/modules/nf-core/tiddit/sv/test.yml
@@ -7,7 +7,7 @@
     - path: output/tiddit/test.ploidies.tab
       md5sum: c69e73fe090b260d379205935c64b63c
     - path: output/tiddit/test.vcf
-      md5sum: 6e045e4e03729dd0f03e2b6d2193ed88
+      md5sum: 2ff97cdcd328c498fdb5aace82bc11e3
 
 - name: tiddit sv test_tiddit_sv_bam_no_bwa
   command: nextflow run ./tests/modules/nf-core/tiddit/sv -entry test_tiddit_sv_bam_no_bwa -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/tiddit/sv/nextflow.config
@@ -18,7 +18,7 @@
     - path: output/tiddit/test.ploidies.tab
       md5sum: c69e73fe090b260d379205935c64b63c
     - path: output/tiddit/test.vcf
-      md5sum: 9e03f9ef4eda29ef748c67dc293235b3
+      md5sum: f28d5d5e1a27117e8820d82afc09a4ec
 
 - name: tiddit sv test_tiddit_sv_cram
   command: nextflow run ./tests/modules/nf-core/tiddit/sv -entry test_tiddit_sv_cram -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/tiddit/sv/nextflow.config
@@ -29,7 +29,7 @@
     - path: output/tiddit/test.ploidies.tab
       md5sum: 13c4762ede32d319e8582cf7d6d77b71
     - path: output/tiddit/test.vcf
-      md5sum: 4ec60aa26e0f055ce51d3fb84fb40cc0
+      md5sum: b778ea5e390bf3c8f140a92ab6ae1231
 
 - name: tiddit sv test_tiddit_sv_cram_no_bwa
   command: nextflow run ./tests/modules/nf-core/tiddit/sv -entry test_tiddit_sv_cram_no_bwa -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/tiddit/sv/nextflow.config
@@ -40,4 +40,4 @@
     - path: output/tiddit/test.ploidies.tab
       md5sum: 13c4762ede32d319e8582cf7d6d77b71
     - path: output/tiddit/test.vcf
-      md5sum: 6d0ae57587bd2af0603d52d993053523
+      md5sum: f6f06ffba6df0aecdd1974775a05cbe6