diff --git a/ingest/Snakefile b/ingest/Snakefile index 8b47ecc2a..3c0a6a610 100644 --- a/ingest/Snakefile +++ b/ingest/Snakefile @@ -38,14 +38,15 @@ rule all: rule fetch_ncbi_dataset_package: + # TODO: #1844 Set API key through secret output: dataset_package="results/ncbi_dataset.zip", - retries: 5 shell: """ datasets download virus genome taxon {TAXON_ID} \ --no-progressbar \ - --filename {output.dataset_package} + --filename {output.dataset_package} \ + --api-key 15c4ff96de265753f878bb08d88ca64df909 \ """