RUN MODE LITE THREAD was set to 64. FASTA was set to /gpfs/commons/home/yaox-934/tmp/weaverTest/Weaver_example/INPUT/SIMU.fa. WIG was set to /gpfs/commons/home/yaox-934/tmp/weaverTest/Weaver_example/INPUT/X.bam.wig. MAP was set to /gpfs/commons/home/yaox-934/tmp/weaverTest/Weaver_example/INPUT/map100mer.bd. SV was set to /gpfs/commons/home/yaox-934/tmp/weaverTest/Weaver_example/INPUT/FINAL_SV. SNP was set to /gpfs/commons/home/yaox-934/tmp/weaverTest/Weaver_example/INPUT/SNP. GAP was set to /gpfs/commons/home/yaox-934/tmp/weaverTest/Weaver_example/INPUT/REGION. RUNFLAG was set to 1. TUMOR coverage was set to 20. NORMAL was set to 0. chrA 13388 chrB 9702 chrA chrB Getting coverage profile... Getting coverage profile done! Getting GC content done! Getting Mapability done! base_mean = 20 best_norm = 0 hei chrA 2368 2267 2241010 2341012 hei chrA 10729 10628 8840658 8940660 hei chrA 12568 12517 10336196 10386198 hei chrA 20480 20380 16806580 16906580 hei chrA 26054 25953 21756891 21856893 hei chrA 27969 27918 23418868 23468869 hei chrB 946 895 896450 946452 hei chrB 2697 2682 2683528 2696530 hei chrB 8177 8164 7337133 7350133 hei chrB 19879 19778 17184982 17284984 hei chrB 23136 23123 20177706 20190706 LBP scan chrB chrA 0 0 5000 5000 10000 10000 15000 15000 20000 20000 25000 25000 30000 30000 0 dee chrA 0 1990453 0 0 0.269271 dee chrA 2341012 3284239 757 0.000802564 correct 4 0.270184 dee chrA 3372138 6327117 2288 0.000774286 correct 4 0.270924 dee chrA 6838458 8840658 1458 0.000728199 correct 4 0.271097 dee chrA 8940660 9859794 892 0.000970479 correct 4 0.267746 dee chrA 10860256 15798725 3710 0.000751245 correct 4 0.260988 dee chrA 15848728 16432088 154 0.000263988 0.268834 dee chrA 16906580 20013296 1873 0.000602887 correct 4 0 dee chrA 20013297 21013296 0 0 0.268781 dee chrA 21856893 23120119 870 0.000688713 correct 4 SD chrA 23468869 25999999 0 0 0 dee chrB 236217 896450 0 0 0 dee chrB 946452 2588526 0 0 0.2697 dee chrB 2696530 6332132 2386 0.000656287 correct 4 0 dee chrB 6332133 7332135 0 0 0.268285 dee chrB 7646312 11887286 2331 0.000549638 correct 4 0.270948 dee chrB 12460458 17184982 3137 0.000663982 correct 4 0.270186 dee chrB 17284984 19172711 1073 0.000568408 correct 4 0 dee chrB 19172712 20152711 0 0 0.271581 dee chrB 20190706 21429528 368 0.000297056 SD chrB 21429529 27999999 0 0 weak chrA 1990454 1990957 weak chrB 2588527 2589028 weak chrB 2678528 2683528 weak chrB 7332136 7337133 weak chrB 20172710 20177706 LBP LBP init xx chrA 2123326 3 0 chrA 2171862 3 0 xxb 3 xx chrB 2683528 2 1 chrB 2696530 2 0 xxb 2 xx chrB 7626313 1 0 chrB 7646311 1 0 xxb 1 xx chrA 21405848 3 0 chrA 21455846 3 0 xxb 3 xx chrA 16806580 3 0 chrA 16906580 3 0 xxb 3 xx chrA 8840658 3 0 chrA 8940660 3 0 xxb 3 xx chrA 3372138 3 0 chrB 21429528 3 0 xxb 3 xx chrB 896450 1 0 chrB 946452 1 0 xxb 1 xx chrA 2080457 3 0 chrA 20013296 3 0 xxb 3 xx chrB 17184982 3 0 chrB 17284984 3 0 xxb 3 xx chrA 10860256 3 0 chrB 2589028 3 1 xxb 3 xx chrA 16432089 1 0 chrA 16452089 1 0 xxb 1 xx chrA 6788459 3 0 chrA 6838457 3 0 xxb 3 xx chrA 10336196 1 0 chrA 10386198 1 0 xxb 1 xx chrB 12410456 3 0 chrB 12460457 3 0 xxb 3 xx chrA 2241010 3 0 chrA 2341012 3 0 xxb 3xx chrA 1990957 3 1 chrB 20172710 3 1 xxb 3 xx chrA 21013297 3 0 chrB 11887286 3 0 xxb 3 xx chrB 216215 1 0 chrB 236216 1 0 xxb 1 xx chrB 7337133 1 1 chrB 7350133 1 0 xxb 1 xx chrB 7332136 3 1 chrB 19172711 3 0 xxb 3 xx chrA 23418868 1 0 chrA 23468869 1 0 xxb 1 xx chrA 6327118 1 0 chrA 6347119 1 0 xxb 1 xx chrA 21756891 3 0 chrA 21856893 3 0 xxb 3 xx chrB 2588527 3 1 chrB 6332132 3 0 xxb 3 xx chrA 23120119 3 0 chrB 2678528 3 1 xxb xx 3 chrA 1990454 3 1 chrA 3284239 3 0 xxb 3 xx chrA 15798726 3 0 chrA 15848727 3 0 xxb 3 xx chrB 20177706 2 1 chrB 20190706 3 0 kkd 3 LBP print LBP scan xxxxxxxxxxxxx chrA xxxxxxxxxxxxx chrB pp 236 1 0 0 pp 236 2 0 -106.109 pp 946 1 0 0