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Rabl configuration #16

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PengfeiInTuebingen opened this issue Dec 11, 2023 · 3 comments
Open

Rabl configuration #16

PengfeiInTuebingen opened this issue Dec 11, 2023 · 3 comments

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@PengfeiInTuebingen
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Hi Mikhail,
Could we extract centromere or telomere clusters and calculate their compartment strength using panted?
Best,
Pengfei
@magnitov
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Owner

Hi @PengfeiInTuebingen,

Unfortunately, I do not this it is feasible with the current tool implementation.

Best,
Mikhail

@PengfeiInTuebingen
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hi,
thanks for your quick reply.
do you have any recommendations for the rabl compartment analysis?
pf

@magnitov
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I am not aware if any tools exist for this specific task. My go-to would be to use cooltools (https://github.com/open2c/cooltools) and pile-up the regions myself. See also here: https://www.biorxiv.org/content/10.1101/2023.07.15.549120v1.full.

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@magnitov @PengfeiInTuebingen