LICENSE

This software constitutes a joint work and the contributions of individual
authors are subject to different licenses.  Contributions and licenses are
listed in the applicable source files, with specific details on each
individual contribution captured in the revision control system.

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For all code, except as indicated otherwise:

PUBLIC DOMAIN NOTICE

This software is freely available to the public for use
without a copyright notice. Restrictions cannot be placed on its present or
future use.

Although all reasonable efforts have been taken to ensure the accuracy and
reliability of the software and associated data, the National Human Genome
Research Institute (NHGRI), National Institutes of Health (NIH) and the
U.S. Government do not and cannot warrant the performance or results that
may be obtained by using this software or data. NHGRI, NIH and the
U.S. Government disclaim all warranties as to performance, merchantability
or fitness for any particular purpose.

Please cite the authors in any work or product based on this material.

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For minimap2:

URL: https://lh3.github.io/minimap2

The MIT License

Copyright (c) 2018-     Dana-Farber Cancer Institute
              2017-2018 Broad Institute, Inc.

Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense, and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject to
the following conditions:

The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.

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For bloom: 

URL: http://www.partow.net/programming/bloomfilter/index.html

Copyright notice:
Free use of the Open Bloom Filter Library is permitted under the
guidelines and in accordance with the MIT License.  
http://www.opensource.org/licenses/MIT