diff --git a/README.md b/README.md index 8d09032..48a4173 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,6 @@ [![Python Version](https://img.shields.io/badge/Python-3.8%2B-blue.svg)](https://www.python.org/downloads/) [![Suggestions Welcome](https://img.shields.io/badge/Suggestions-Welcome-brightgreen.svg)](CONTRIBUTING.md) [![Release](https://img.shields.io/github/v/release/marta-seq/PENGUIN.svg)](https://github.com/marta-seq/PENGUIN/releases/) - # PENGUIN *PENGUIN* - Percentile Normalization GUI Image deNoising is a @@ -51,7 +50,7 @@ To manually create and install packages use: ```bash conda create --name penguin conda activate penguin -conda install matplotlib pandas panel numpy opencv scikit-image ipywidgets jupyter ipykernel plotly +conda install matplotlib pandas panel opencv scikit-image ipywidgets jupyter ipykernel plotly pip install apeer-ometiff-library --no-deps ``` @@ -71,6 +70,12 @@ add the environment kernel to jupyter python -m ipykernel install --user --name=penguin ``` launch the jupyter and be sure that you are running with the penguin kernel +If you have problems with widgets appearing in Jupyter notebook try downgrade Ipython version, +for example: + +```bash +python pip install iPython==8.20.0 +``` ## Getting started