fit_res$res_tab
-#> X Y Z Dynamic Coil X.CrCH2 Ala Asp Cr
-#> 1 1 1 1 1 1 0 8.228789e-06 3.548331e-05 4.020309e-05
-#> GABA Glc Gln GSH Glu GPC
-#> 1 1.706749e-05 2.44213e-06 3.029705e-06 2.227787e-05 6.499646e-05 1.603289e-05
-#> Ins Lac Lip09 Lip13a Lip13b Lip20 MM09
-#> 1 5.902964e-05 5.818691e-06 2.362974e-05 2.635442e-06 0 0 9.887537e-06
-#> MM12 MM14 MM17 MM20 NAA NAAG
-#> 1 6.546978e-06 2.599935e-05 2.245504e-05 9.207416e-05 5.981786e-05 1.556188e-05
-#> PCh PCr sIns Tau tNAA tCr tCho
-#> 1 0 2.101295e-05 6.508645e-06 0 7.537974e-05 6.121604e-05 1.603289e-05
-#> Glx tLM09 tLM13 tLM20 X.CrCH2.sd Ala.sd
-#> 1 6.802616e-05 3.351727e-05 3.518177e-05 9.207416e-05 2.383752e-06 4.353322e-06
-#> Asp.sd Cr.sd GABA.sd Glc.sd Gln.sd GSH.sd
-#> 1 9.243627e-06 3.71518e-06 4.580068e-06 4.427046e-06 5.089143e-06 2.022837e-06
+#> X Y Z Dynamic Coil X.CrCH2 Ala Asp Cr GABA
+#> 1 1 1 1 1 1 0 8.282683e-06 3.536328e-05 4.051518e-05 1.69569e-05
+#> Glc Gln GSH Glu GPC Ins
+#> 1 2.923544e-06 3.307971e-06 2.232385e-05 6.530254e-05 1.610997e-05 5.954705e-05
+#> Lac Lip09 Lip13a Lip13b Lip20 MM09 MM12
+#> 1 5.75405e-06 2.365938e-05 2.725383e-06 0 0 9.856811e-06 6.539043e-06
+#> MM14 MM17 MM20 NAA NAAG PCh
+#> 1 2.601885e-05 2.253372e-05 9.249603e-05 5.984007e-05 1.533315e-05 0
+#> PCr sIns Tau tNAA tCr tCho
+#> 1 2.076041e-05 6.578295e-06 0 7.517322e-05 6.127558e-05 1.610997e-05
+#> Glx tLM09 tLM13 tLM20 X.CrCH2.sd Ala.sd
+#> 1 6.861051e-05 3.35162e-05 3.528328e-05 9.249603e-05 2.386273e-06 4.352719e-06
+#> Asp.sd Cr.sd GABA.sd Glc.sd Gln.sd GSH.sd
+#> 1 9.250881e-06 3.711212e-06 4.552666e-06 4.441281e-06 5.09079e-06 2.024702e-06
#> Glu.sd GPC.sd Ins.sd Lac.sd Lip09.sd Lip13a.sd
-#> 1 5.086888e-06 2.525937e-06 2.09104e-06 5.311857e-06 4.118787e-06 1.328562e-05
-#> Lip13b.sd Lip20.sd MM09.sd MM12.sd MM14.sd MM17.sd
-#> 1 6.477212e-06 7.510917e-06 3.827221e-06 4.597894e-06 7.234489e-06 3.810268e-06
+#> 1 5.090244e-06 2.562912e-06 2.10465e-06 5.311585e-06 4.125766e-06 1.329999e-05
+#> Lip13b.sd Lip20.sd MM09.sd MM12.sd MM14.sd MM17.sd
+#> 1 6.483611e-06 7.522036e-06 3.83357e-06 4.60222e-06 7.23746e-06 3.817216e-06
#> MM20.sd NAA.sd NAAG.sd PCh.sd PCr.sd sIns.sd
-#> 1 8.602466e-06 1.015226e-06 1.215672e-06 2.174697e-06 3.108039e-06 7.233858e-07
-#> Tau.sd tNAA.sd tCr.sd tCho.sd Glx.sd tLM09.sd
-#> 1 3.777985e-06 7.031059e-07 5.881708e-07 2.1135e-07 3.165046e-06 1.006532e-06
-#> tLM13.sd tLM20.sd phase lw shift asym
-#> 1 1.572003e-06 3.018189e-06 11.15088 5.038937 -0.003427611 0.1764498
+#> 1 8.608667e-06 1.015224e-06 1.201871e-06 2.196945e-06 3.101179e-06 7.250236e-07
+#> Tau.sd tNAA.sd tCr.sd tCho.sd Glx.sd tLM09.sd
+#> 1 3.781837e-06 7.017798e-07 5.89541e-07 2.11765e-07 3.173939e-06 1.008401e-06
+#> tLM13.sd tLM20.sd phase lw shift asym
+#> 1 1.57506e-06 3.021225e-06 10.99464 5.028305 -0.003608806 0.1754811
#> res.deviance res.niter res.info
-#> 1 7.30032e-05 28 2
+#> 1 7.331634e-05 28 2
#> res.message bl_ed_pppm
#> 1 Relative error between `par' and the solution is at most `ptol'. 2.364083
#> max_bl_flex_used full_res fit_pts ppm_range SNR SRR FQN
-#> 1 FALSE 7.745303e-05 497 3.8 62.79191 51.44067 1.490027
-#> tNAA_lw tCr_lw tCho_lw auto_bl_crit_7 auto_bl_crit_5.901
-#> 1 0.0456527 0.05199593 0.0543881 -8.904402 -8.947808
+#> 1 FALSE 7.763333e-05 497 3.8 62.77982 51.30852 1.497136
+#> tNAA_lw tCr_lw tCho_lw auto_bl_crit_7 auto_bl_crit_5.901
+#> 1 0.04557527 0.05197066 0.05450109 -8.904265 -8.948438
#> auto_bl_crit_4.942 auto_bl_crit_4.12 auto_bl_crit_3.425 auto_bl_crit_2.844
-#> 1 -8.980941 -9.003463 -9.016574 -9.023968
+#> 1 -8.981514 -9.003005 -9.014519 -9.019649
#> auto_bl_crit_2.364 auto_bl_crit_1.969 auto_bl_crit_1.647 auto_bl_crit_1.384
-#> 1 -9.027876 -9.027565 -9.014312 -8.963289
+#> 1 -9.021423 -9.019548 -9.006584 -8.959218
#> auto_bl_crit_1.17 auto_bl_crit_0.997 auto_bl_crit_0.856 auto_bl_crit_0.743
-#> 1 -8.84875 -8.69479 -8.566 -8.488426
+#> 1 -8.852424 -8.707634 -8.586249 -8.513339
#> auto_bl_crit_0.654 auto_bl_crit_0.593 auto_bl_crit_0.558 auto_bl_crit_0.54
-#> 1 -8.449885 -8.432826 -8.425661 -8.422674
+#> 1 -8.477466 -8.46179 -8.455281 -8.452588
#> auto_bl_crit_0.532 auto_bl_crit_0.529
-#> 1 -8.421419 -8.420888Note that signal names appended with “.sd” are the CRLB estimates for the uncertainty (standard deviation) in the metabolite quantity estimate. e.g. to calculate the percentage s.d. for tNAA:
fit_res$res_tab$tNAA.sd / fit_res$res_tab$tNAA * 100
-#> [1] 0.9327518Spectral SNR:
fit_res$res_tab$SNR
-#> [1] 62.79191Linewidth of the tNAA resonance in PPM:
fit_res$res_tab$tNAA_lw
-#> [1] 0.0456527An alternative method scales the metabolite values into molar (mM) units (mol / Litre of tissue) based on assumptions outlined in the LCModel manual and references therein (section 10.2). This approach may @@ -326,7 +326,7 @@
fit_res_molar <- scale_amp_molar(fit_res, mrs_data_wref)
fit_res_molar$res_tab$tNAA
-#> [1] 6.817593Note, while “absolute” units are attractive, a large number of assumptions about metabolite and water relaxation rates are necessary to arrive at these mM estimates. 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b/docs/authors.html index 4bf78340..ddd913db 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ diff --git a/docs/index.html b/docs/index.html index f1729197..5fa5a491 100644 --- a/docs/index.html +++ b/docs/index.html @@ -43,7 +43,7 @@ diff --git a/docs/news/index.html b/docs/news/index.html index 60a58e1d..4256270b 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 4e1926d5..740ac587 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -7,7 +7,7 @@ articles: spant-intro: spant-intro.html spant-metabolite-simulation: spant-metabolite-simulation.html spant-preprocessing: spant-preprocessing.html -last_built: 2023-10-20T10:28Z +last_built: 2023-10-23T14:18Z urls: reference: https://martin3141.github.io/spant/reference article: https://martin3141.github.io/spant/articles diff --git a/docs/reference/Arg.mrs_data.html b/docs/reference/Arg.mrs_data.html index 4d9d66d3..3be8e93a 100644 --- a/docs/reference/Arg.mrs_data.html +++ b/docs/reference/Arg.mrs_data.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/Conj.mrs_data.html b/docs/reference/Conj.mrs_data.html index d67f50d4..24eec8d3 100644 --- a/docs/reference/Conj.mrs_data.html +++ b/docs/reference/Conj.mrs_data.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/Im.mrs_data.html b/docs/reference/Im.mrs_data.html index 232034ae..81f90021 100644 --- a/docs/reference/Im.mrs_data.html +++ b/docs/reference/Im.mrs_data.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/Imzap.html b/docs/reference/Imzap.html index 67c76ef2..608c31e6 100644 --- a/docs/reference/Imzap.html +++ b/docs/reference/Imzap.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/Mod.mrs_data.html b/docs/reference/Mod.mrs_data.html index 23dc8ff6..85fe49af 100644 --- a/docs/reference/Mod.mrs_data.html +++ b/docs/reference/Mod.mrs_data.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/Ncoils.html b/docs/reference/Ncoils.html index d087903f..fa763281 100644 --- a/docs/reference/Ncoils.html +++ b/docs/reference/Ncoils.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/Ndyns.html b/docs/reference/Ndyns.html index 17e5ca99..8bb2cccd 100644 --- a/docs/reference/Ndyns.html +++ b/docs/reference/Ndyns.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/Npts.html b/docs/reference/Npts.html index 9ccfeb5e..0271ebc5 100644 --- a/docs/reference/Npts.html +++ b/docs/reference/Npts.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/Nspec.html b/docs/reference/Nspec.html index ecfebcbd..e260830b 100644 --- a/docs/reference/Nspec.html +++ b/docs/reference/Nspec.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/Ntrans.html b/docs/reference/Ntrans.html index 98057838..4c85d24e 100644 --- a/docs/reference/Ntrans.html +++ b/docs/reference/Ntrans.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/Nx.html b/docs/reference/Nx.html index 82a8922d..1337a26e 100644 --- a/docs/reference/Nx.html +++ b/docs/reference/Nx.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/Ny.html b/docs/reference/Ny.html index b790e6e9..af7b7c99 100644 --- a/docs/reference/Ny.html +++ b/docs/reference/Ny.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/Nz.html b/docs/reference/Nz.html index 2392f95e..7434dd31 100644 --- a/docs/reference/Nz.html +++ b/docs/reference/Nz.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/Re.mrs_data.html b/docs/reference/Re.mrs_data.html index a5d6e95e..27cfe66d 100644 --- a/docs/reference/Re.mrs_data.html +++ b/docs/reference/Re.mrs_data.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/abfit_opts.html b/docs/reference/abfit_opts.html index 977ce819..f7103e03 100644 --- a/docs/reference/abfit_opts.html +++ b/docs/reference/abfit_opts.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/abfit_opts_v1_9_0.html b/docs/reference/abfit_opts_v1_9_0.html index e64f666e..4af5ec9a 100644 --- a/docs/reference/abfit_opts_v1_9_0.html +++ b/docs/reference/abfit_opts_v1_9_0.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/acquire.html b/docs/reference/acquire.html index 870b890e..3959c1b4 100644 --- a/docs/reference/acquire.html +++ b/docs/reference/acquire.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/add_noise.html b/docs/reference/add_noise.html index 0df8d44c..6f045765 100644 --- a/docs/reference/add_noise.html +++ b/docs/reference/add_noise.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/align.html b/docs/reference/align.html index 30bc9b37..5a6a765a 100644 --- a/docs/reference/align.html +++ b/docs/reference/align.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/apodise_xy.html b/docs/reference/apodise_xy.html index 6ca780c1..348074bc 100644 --- a/docs/reference/apodise_xy.html +++ b/docs/reference/apodise_xy.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/append_basis.html b/docs/reference/append_basis.html index 04b89eba..1f14b83c 100644 --- a/docs/reference/append_basis.html +++ b/docs/reference/append_basis.html @@ -17,7 +17,7 @@ diff --git 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+17,7 @@ diff --git a/docs/reference/array2mrs_data.html b/docs/reference/array2mrs_data.html index f73aa67f..76663433 100644 --- a/docs/reference/array2mrs_data.html +++ b/docs/reference/array2mrs_data.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/auto_phase.html b/docs/reference/auto_phase.html index 9ea21527..99057b81 100644 --- a/docs/reference/auto_phase.html +++ b/docs/reference/auto_phase.html @@ -23,7 +23,7 @@ diff --git a/docs/reference/back_extrap_ar.html b/docs/reference/back_extrap_ar.html index 4cf97156..5d74a80e 100644 --- a/docs/reference/back_extrap_ar.html +++ b/docs/reference/back_extrap_ar.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/basis2mrs_data.html b/docs/reference/basis2mrs_data.html index f45b7900..2a7bca19 100644 --- a/docs/reference/basis2mrs_data.html +++ b/docs/reference/basis2mrs_data.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/bbase.html b/docs/reference/bbase.html index 4c51d339..60a0c82c 100644 --- a/docs/reference/bbase.html +++ b/docs/reference/bbase.html @@ -19,7 +19,7 @@ diff --git a/docs/reference/bc_als.html b/docs/reference/bc_als.html index 13efd428..2d9dfa71 100644 --- a/docs/reference/bc_als.html +++ b/docs/reference/bc_als.html @@ -18,7 +18,7 @@ diff --git a/docs/reference/bc_constant.html b/docs/reference/bc_constant.html index 708de6d0..77a81bab 100644 --- a/docs/reference/bc_constant.html +++ b/docs/reference/bc_constant.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/bc_gauss.html b/docs/reference/bc_gauss.html index 7bdd104e..f73695ff 100644 --- a/docs/reference/bc_gauss.html +++ b/docs/reference/bc_gauss.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/bc_poly.html b/docs/reference/bc_poly.html index 17c4f914..4cc33ad8 100644 --- a/docs/reference/bc_poly.html +++ b/docs/reference/bc_poly.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/bc_spline.html b/docs/reference/bc_spline.html index 1e586c39..ae544adb 100644 --- a/docs/reference/bc_spline.html +++ b/docs/reference/bc_spline.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/beta2lw.html b/docs/reference/beta2lw.html index a783b7be..1c732203 100644 --- a/docs/reference/beta2lw.html +++ b/docs/reference/beta2lw.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/bin_spec.html b/docs/reference/bin_spec.html index 97fa5c46..02d54ebc 100644 --- a/docs/reference/bin_spec.html +++ b/docs/reference/bin_spec.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/calc_coil_noise_cor.html b/docs/reference/calc_coil_noise_cor.html index 101c253a..d576db5f 100644 --- a/docs/reference/calc_coil_noise_cor.html +++ b/docs/reference/calc_coil_noise_cor.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/calc_coil_noise_sd.html b/docs/reference/calc_coil_noise_sd.html index ab324c2d..f2b87522 100644 --- a/docs/reference/calc_coil_noise_sd.html +++ b/docs/reference/calc_coil_noise_sd.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/calc_ed_from_lambda.html b/docs/reference/calc_ed_from_lambda.html index 6a8ab41d..94068947 100644 --- a/docs/reference/calc_ed_from_lambda.html +++ b/docs/reference/calc_ed_from_lambda.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/calc_peak_info_vec.html b/docs/reference/calc_peak_info_vec.html index 1240c313..48ae73f1 100644 --- a/docs/reference/calc_peak_info_vec.html +++ b/docs/reference/calc_peak_info_vec.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/calc_sd_poly.html b/docs/reference/calc_sd_poly.html index 8b23ba76..124d0a2d 100644 --- a/docs/reference/calc_sd_poly.html +++ b/docs/reference/calc_sd_poly.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/calc_spec_diff.html b/docs/reference/calc_spec_diff.html index eafecaf7..ef3b786a 100644 --- a/docs/reference/calc_spec_diff.html +++ b/docs/reference/calc_spec_diff.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/calc_spec_snr.html b/docs/reference/calc_spec_snr.html index a61bca99..1fccd8cb 100644 --- a/docs/reference/calc_spec_snr.html +++ b/docs/reference/calc_spec_snr.html @@ -18,7 +18,7 @@ diff --git a/docs/reference/check_lcm.html b/docs/reference/check_lcm.html index 978dda47..c44a7401 100644 --- a/docs/reference/check_lcm.html +++ b/docs/reference/check_lcm.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/check_tqn.html b/docs/reference/check_tqn.html index 4b8a2f84..7e1302fb 100644 --- a/docs/reference/check_tqn.html +++ b/docs/reference/check_tqn.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/circ_mask.html b/docs/reference/circ_mask.html index 049772a0..9d26cc1b 100644 --- a/docs/reference/circ_mask.html +++ b/docs/reference/circ_mask.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/coherence_filter.html b/docs/reference/coherence_filter.html index 5af988d3..e8f728ab 100644 --- a/docs/reference/coherence_filter.html +++ b/docs/reference/coherence_filter.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/collapse_to_dyns.html b/docs/reference/collapse_to_dyns.html index 119151a0..be22e604 100644 --- a/docs/reference/collapse_to_dyns.html +++ b/docs/reference/collapse_to_dyns.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/comb_coils.html b/docs/reference/comb_coils.html index 9c38f325..73a66dd8 100644 --- a/docs/reference/comb_coils.html +++ b/docs/reference/comb_coils.html @@ -19,7 +19,7 @@ diff --git a/docs/reference/comb_fit_list_fit_tables.html b/docs/reference/comb_fit_list_fit_tables.html index bc3e04d7..9039816a 100644 --- a/docs/reference/comb_fit_list_fit_tables.html +++ b/docs/reference/comb_fit_list_fit_tables.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/comb_fit_list_result_tables.html b/docs/reference/comb_fit_list_result_tables.html index 026117b7..75e1120a 100644 --- a/docs/reference/comb_fit_list_result_tables.html +++ b/docs/reference/comb_fit_list_result_tables.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/comb_fit_tables.html b/docs/reference/comb_fit_tables.html index 3e1bb06e..39f49fc0 100644 --- a/docs/reference/comb_fit_tables.html +++ b/docs/reference/comb_fit_tables.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/comb_metab_ref.html b/docs/reference/comb_metab_ref.html index 62e37bbc..3760bb3d 100644 --- a/docs/reference/comb_metab_ref.html +++ b/docs/reference/comb_metab_ref.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/conv_mrs.html b/docs/reference/conv_mrs.html index 4a8205c4..c10664de 100644 --- a/docs/reference/conv_mrs.html +++ b/docs/reference/conv_mrs.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/crop_basis.html b/docs/reference/crop_basis.html index 2a8dba28..c1ac735e 100644 --- a/docs/reference/crop_basis.html +++ b/docs/reference/crop_basis.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/crop_spec.html b/docs/reference/crop_spec.html index 82c999c1..f43e6653 100644 --- a/docs/reference/crop_spec.html +++ b/docs/reference/crop_spec.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/crop_td_pts.html b/docs/reference/crop_td_pts.html index 8710dd01..2c77d28e 100644 --- a/docs/reference/crop_td_pts.html +++ b/docs/reference/crop_td_pts.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/crop_td_pts_end.html b/docs/reference/crop_td_pts_end.html index 1f090ee8..85d8986b 100644 --- a/docs/reference/crop_td_pts_end.html +++ b/docs/reference/crop_td_pts_end.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/crop_td_pts_pot.html b/docs/reference/crop_td_pts_pot.html index 8a5624f1..8fd2671d 100644 --- a/docs/reference/crop_td_pts_pot.html +++ b/docs/reference/crop_td_pts_pot.html @@ -23,7 +23,7 @@ diff --git a/docs/reference/crop_xy.html b/docs/reference/crop_xy.html index 1b64a51a..80751d30 100644 --- a/docs/reference/crop_xy.html +++ b/docs/reference/crop_xy.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/crossprod_3d.html b/docs/reference/crossprod_3d.html index fbdf9379..66cfa31b 100644 --- a/docs/reference/crossprod_3d.html +++ b/docs/reference/crossprod_3d.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/decimate_mrs_fd.html b/docs/reference/decimate_mrs_fd.html index ec88904a..0e771283 100644 --- a/docs/reference/decimate_mrs_fd.html +++ b/docs/reference/decimate_mrs_fd.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/decimate_mrs_td.html b/docs/reference/decimate_mrs_td.html index 4fb91fae..0fc4ad93 100644 --- a/docs/reference/decimate_mrs_td.html +++ b/docs/reference/decimate_mrs_td.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/deconv_mrs.html b/docs/reference/deconv_mrs.html index ebc0f4cc..9b233f76 100644 --- a/docs/reference/deconv_mrs.html +++ b/docs/reference/deconv_mrs.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/def_N.html b/docs/reference/def_N.html index a062291e..048dc143 100644 --- a/docs/reference/def_N.html +++ b/docs/reference/def_N.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/def_acq_paras.html b/docs/reference/def_acq_paras.html index 59ff99c8..d0aaccc3 100644 --- a/docs/reference/def_acq_paras.html +++ b/docs/reference/def_acq_paras.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/def_fs.html b/docs/reference/def_fs.html index b74a34d6..d1e7f9b1 100644 --- a/docs/reference/def_fs.html +++ b/docs/reference/def_fs.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/def_ft.html b/docs/reference/def_ft.html index 6de04bad..f12c51d0 100644 --- a/docs/reference/def_ft.html +++ b/docs/reference/def_ft.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/def_nuc.html b/docs/reference/def_nuc.html index 505d3512..a6443e9f 100644 --- a/docs/reference/def_nuc.html +++ b/docs/reference/def_nuc.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/def_ref.html b/docs/reference/def_ref.html index 691a841c..3c089996 100644 --- a/docs/reference/def_ref.html +++ b/docs/reference/def_ref.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/dicom_reader.html b/docs/reference/dicom_reader.html index 1dcae75e..19bfc54b 100644 --- a/docs/reference/dicom_reader.html +++ b/docs/reference/dicom_reader.html @@ -19,7 +19,7 @@ diff --git a/docs/reference/diff_mrs.html b/docs/reference/diff_mrs.html index 988fc0b5..43ce16ab 100644 --- a/docs/reference/diff_mrs.html +++ b/docs/reference/diff_mrs.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/downsample_mrs_fd.html b/docs/reference/downsample_mrs_fd.html index ce4484d3..28d524b3 100644 --- a/docs/reference/downsample_mrs_fd.html +++ b/docs/reference/downsample_mrs_fd.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/downsample_mrs_td.html b/docs/reference/downsample_mrs_td.html index 79c1a7f8..80cfa126 100644 --- a/docs/reference/downsample_mrs_td.html +++ b/docs/reference/downsample_mrs_td.html @@ -23,7 +23,7 @@ diff --git a/docs/reference/ecc.html b/docs/reference/ecc.html index 6ea0ef0b..ca6b0658 100644 --- a/docs/reference/ecc.html +++ b/docs/reference/ecc.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/elliptical_mask.html b/docs/reference/elliptical_mask.html index 9af9b895..c9542142 100644 --- a/docs/reference/elliptical_mask.html +++ b/docs/reference/elliptical_mask.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/est_noise_sd.html b/docs/reference/est_noise_sd.html index a0c36b18..52c47e7a 100644 --- a/docs/reference/est_noise_sd.html +++ b/docs/reference/est_noise_sd.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/fd2td.html b/docs/reference/fd2td.html index 066e2ad7..8f0167be 100644 --- a/docs/reference/fd2td.html +++ b/docs/reference/fd2td.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/fd_conv_filt.html b/docs/reference/fd_conv_filt.html index 3af8a15f..56d45dbb 100644 --- a/docs/reference/fd_conv_filt.html +++ b/docs/reference/fd_conv_filt.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/fd_gauss_smo.html b/docs/reference/fd_gauss_smo.html index 55df9f55..3878cfbf 100644 --- a/docs/reference/fd_gauss_smo.html +++ b/docs/reference/fd_gauss_smo.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/find_mrs_files.html b/docs/reference/find_mrs_files.html index 0f0e4063..398287fc 100644 --- a/docs/reference/find_mrs_files.html +++ b/docs/reference/find_mrs_files.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/fit_amps.html b/docs/reference/fit_amps.html index 2a8284a1..e27fd701 100644 --- a/docs/reference/fit_amps.html +++ b/docs/reference/fit_amps.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/fit_diags.html b/docs/reference/fit_diags.html index 77238884..9acd2441 100644 --- a/docs/reference/fit_diags.html +++ b/docs/reference/fit_diags.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/fit_mrs.html b/docs/reference/fit_mrs.html index bf35d8ab..b825273a 100644 --- a/docs/reference/fit_mrs.html +++ b/docs/reference/fit_mrs.html @@ -19,7 +19,7 @@ diff --git a/docs/reference/fit_res2csv.html b/docs/reference/fit_res2csv.html index 60e3ed3d..8a4aaab9 100644 --- a/docs/reference/fit_res2csv.html +++ b/docs/reference/fit_res2csv.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/fit_t1_ti_array.html b/docs/reference/fit_t1_ti_array.html index ff0aedcd..6959c5f4 100644 --- a/docs/reference/fit_t1_ti_array.html +++ b/docs/reference/fit_t1_ti_array.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/fit_t1_tr_array.html b/docs/reference/fit_t1_tr_array.html index f67288c9..08ec64cc 100644 --- a/docs/reference/fit_t1_tr_array.html +++ b/docs/reference/fit_t1_tr_array.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/fit_t2_te_array.html b/docs/reference/fit_t2_te_array.html index e6248a1a..640a0585 100644 --- a/docs/reference/fit_t2_te_array.html +++ b/docs/reference/fit_t2_te_array.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/fp_phase.html b/docs/reference/fp_phase.html index 127200df..7a25a079 100644 --- a/docs/reference/fp_phase.html +++ b/docs/reference/fp_phase.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/fp_phase_correct.html b/docs/reference/fp_phase_correct.html index 6086369d..56a95938 100644 --- a/docs/reference/fp_phase_correct.html +++ b/docs/reference/fp_phase_correct.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/fp_scale.html b/docs/reference/fp_scale.html index 984cc580..4658c150 100644 --- a/docs/reference/fp_scale.html +++ b/docs/reference/fp_scale.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/fs.html b/docs/reference/fs.html index 9fbadf4b..5e9a79f3 100644 --- a/docs/reference/fs.html +++ b/docs/reference/fs.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/ft_dyns.html b/docs/reference/ft_dyns.html index 3500ec5f..47ca2bd5 100644 --- a/docs/reference/ft_dyns.html +++ b/docs/reference/ft_dyns.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/ft_shift.html b/docs/reference/ft_shift.html index aad69d71..057229c9 100644 --- a/docs/reference/ft_shift.html +++ b/docs/reference/ft_shift.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/ft_shift_mat.html b/docs/reference/ft_shift_mat.html index 62e904d1..b1e828fd 100644 --- a/docs/reference/ft_shift_mat.html +++ b/docs/reference/ft_shift_mat.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/gausswin_2d.html b/docs/reference/gausswin_2d.html index 7823239e..bcc577c2 100644 --- a/docs/reference/gausswin_2d.html +++ b/docs/reference/gausswin_2d.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/gen_F.html b/docs/reference/gen_F.html index 791da8ab..7003ed67 100644 --- a/docs/reference/gen_F.html +++ b/docs/reference/gen_F.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/gen_F_xy.html b/docs/reference/gen_F_xy.html index e2b74b66..6c8c5713 100644 --- a/docs/reference/gen_F_xy.html +++ b/docs/reference/gen_F_xy.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/gen_I.html b/docs/reference/gen_I.html index 2bf8d078..628e6713 100644 --- a/docs/reference/gen_I.html +++ b/docs/reference/gen_I.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_1h_brain_basis_paras.html b/docs/reference/get_1h_brain_basis_paras.html index e6693594..d8d45ca8 100644 --- a/docs/reference/get_1h_brain_basis_paras.html +++ b/docs/reference/get_1h_brain_basis_paras.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/get_1h_brain_basis_paras_v1.html b/docs/reference/get_1h_brain_basis_paras_v1.html index ae19beea..2c55d476 100644 --- a/docs/reference/get_1h_brain_basis_paras_v1.html +++ b/docs/reference/get_1h_brain_basis_paras_v1.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/get_1h_brain_basis_paras_v2.html b/docs/reference/get_1h_brain_basis_paras_v2.html index 34fdac7c..41d65849 100644 --- a/docs/reference/get_1h_brain_basis_paras_v2.html +++ b/docs/reference/get_1h_brain_basis_paras_v2.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/get_1h_brain_basis_paras_v3.html b/docs/reference/get_1h_brain_basis_paras_v3.html index 671dd57d..fd80e278 100644 --- a/docs/reference/get_1h_brain_basis_paras_v3.html +++ b/docs/reference/get_1h_brain_basis_paras_v3.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/get_2d_psf.html b/docs/reference/get_2d_psf.html index 18540dd6..9d69c9ce 100644 --- a/docs/reference/get_2d_psf.html +++ b/docs/reference/get_2d_psf.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_acq_paras.html b/docs/reference/get_acq_paras.html index 92b89905..c2ec1b4f 100644 --- a/docs/reference/get_acq_paras.html +++ b/docs/reference/get_acq_paras.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_basis_subset.html b/docs/reference/get_basis_subset.html index eab696ca..9505e3ba 100644 --- a/docs/reference/get_basis_subset.html +++ b/docs/reference/get_basis_subset.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_dyns.html b/docs/reference/get_dyns.html index b601e8b3..0675f989 100644 --- a/docs/reference/get_dyns.html +++ b/docs/reference/get_dyns.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_even_dyns.html b/docs/reference/get_even_dyns.html index 9b4dc329..8b184a0f 100644 --- a/docs/reference/get_even_dyns.html +++ b/docs/reference/get_even_dyns.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_fh_dyns.html b/docs/reference/get_fh_dyns.html index 3519a960..2de344c0 100644 --- a/docs/reference/get_fh_dyns.html +++ b/docs/reference/get_fh_dyns.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_fit_map.html b/docs/reference/get_fit_map.html index 3ed66293..cf016a79 100644 --- a/docs/reference/get_fit_map.html +++ b/docs/reference/get_fit_map.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_fp.html b/docs/reference/get_fp.html index 0d38965f..87c9abb4 100644 --- a/docs/reference/get_fp.html +++ b/docs/reference/get_fp.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_guassian_pulse.html b/docs/reference/get_guassian_pulse.html index 20bbccc6..6ded9f6b 100644 --- a/docs/reference/get_guassian_pulse.html +++ b/docs/reference/get_guassian_pulse.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_head_dyns.html b/docs/reference/get_head_dyns.html index f9efc09d..0ee2161d 100644 --- a/docs/reference/get_head_dyns.html +++ b/docs/reference/get_head_dyns.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_lcm_cmd.html b/docs/reference/get_lcm_cmd.html index 00b38c96..e233d1b7 100644 --- a/docs/reference/get_lcm_cmd.html +++ b/docs/reference/get_lcm_cmd.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_metab.html b/docs/reference/get_metab.html index 8c356bfe..99d09c1c 100644 --- a/docs/reference/get_metab.html +++ b/docs/reference/get_metab.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_mol_names.html b/docs/reference/get_mol_names.html index 22f66585..36f447f6 100644 --- a/docs/reference/get_mol_names.html +++ b/docs/reference/get_mol_names.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/get_mol_paras.html b/docs/reference/get_mol_paras.html index c591a4c3..c1c6617a 100644 --- a/docs/reference/get_mol_paras.html +++ b/docs/reference/get_mol_paras.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_mrs_affine.html b/docs/reference/get_mrs_affine.html index 26b1309e..ca433210 100644 --- a/docs/reference/get_mrs_affine.html +++ b/docs/reference/get_mrs_affine.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_mrsi2d_seg.html b/docs/reference/get_mrsi2d_seg.html index 8509b0d5..74b5e867 100644 --- a/docs/reference/get_mrsi2d_seg.html +++ b/docs/reference/get_mrsi2d_seg.html @@ -18,7 +18,7 @@ diff --git a/docs/reference/get_mrsi_voi.html b/docs/reference/get_mrsi_voi.html index 200213c1..21d2c0cf 100644 --- a/docs/reference/get_mrsi_voi.html +++ b/docs/reference/get_mrsi_voi.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_mrsi_voxel.html b/docs/reference/get_mrsi_voxel.html index 26279c47..e8e0468f 100644 --- a/docs/reference/get_mrsi_voxel.html +++ b/docs/reference/get_mrsi_voxel.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_mrsi_voxel_xy_psf.html b/docs/reference/get_mrsi_voxel_xy_psf.html index 8f043854..01a8c776 100644 --- a/docs/reference/get_mrsi_voxel_xy_psf.html +++ b/docs/reference/get_mrsi_voxel_xy_psf.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_odd_dyns.html b/docs/reference/get_odd_dyns.html index 8a888589..66a26456 100644 --- a/docs/reference/get_odd_dyns.html +++ b/docs/reference/get_odd_dyns.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_ref.html b/docs/reference/get_ref.html index 6a036b4a..ffed7a3d 100644 --- a/docs/reference/get_ref.html +++ b/docs/reference/get_ref.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_seg_ind.html b/docs/reference/get_seg_ind.html index 00094a8b..157f4f84 100644 --- a/docs/reference/get_seg_ind.html +++ b/docs/reference/get_seg_ind.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_sh_dyns.html b/docs/reference/get_sh_dyns.html index 08a34c68..7fdd42b1 100644 --- a/docs/reference/get_sh_dyns.html +++ b/docs/reference/get_sh_dyns.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_slice.html b/docs/reference/get_slice.html index bf32052d..808518c5 100644 --- a/docs/reference/get_slice.html +++ b/docs/reference/get_slice.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_subset.html b/docs/reference/get_subset.html index 32495dcc..91ae03c9 100644 --- a/docs/reference/get_subset.html +++ b/docs/reference/get_subset.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_svs_voi.html b/docs/reference/get_svs_voi.html index 0a907ebe..a2a851a6 100644 --- a/docs/reference/get_svs_voi.html +++ b/docs/reference/get_svs_voi.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_tail_dyns.html b/docs/reference/get_tail_dyns.html index 050b329b..96f655e9 100644 --- a/docs/reference/get_tail_dyns.html +++ b/docs/reference/get_tail_dyns.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_td_amp.html b/docs/reference/get_td_amp.html index 34c5dd6b..57da37b1 100644 --- a/docs/reference/get_td_amp.html +++ b/docs/reference/get_td_amp.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/get_tqn_cmd.html b/docs/reference/get_tqn_cmd.html index 40ab16c4..4f112b01 100644 --- a/docs/reference/get_tqn_cmd.html +++ b/docs/reference/get_tqn_cmd.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_uncoupled_mol.html b/docs/reference/get_uncoupled_mol.html index ce511935..c382f738 100644 --- a/docs/reference/get_uncoupled_mol.html +++ b/docs/reference/get_uncoupled_mol.html @@ -20,7 +20,7 @@ diff --git a/docs/reference/get_voi_cog.html b/docs/reference/get_voi_cog.html index 3afeb942..ee12eb90 100644 --- a/docs/reference/get_voi_cog.html +++ b/docs/reference/get_voi_cog.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_voi_seg.html b/docs/reference/get_voi_seg.html index d67110bc..adba3d2f 100644 --- a/docs/reference/get_voi_seg.html +++ b/docs/reference/get_voi_seg.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_voi_seg_psf.html b/docs/reference/get_voi_seg_psf.html index 3056f039..39c373f7 100644 --- a/docs/reference/get_voi_seg_psf.html +++ b/docs/reference/get_voi_seg_psf.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/get_voxel.html b/docs/reference/get_voxel.html index e296c2f0..acea3e41 100644 --- a/docs/reference/get_voxel.html +++ b/docs/reference/get_voxel.html @@ -17,7 +17,7 @@ diff --git a/docs/reference/grid_shift_xy.html b/docs/reference/grid_shift_xy.html index e9cf5601..5512e248 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