fit_res$res_tab
-#> X Y Z Dynamic Coil X.CrCH2 Ala Asp Cr
-#> 1 1 1 1 1 1 0 8.228911e-06 3.548337e-05 4.020305e-05
-#> GABA Glc Gln GSH Glu GPC
-#> 1 1.706754e-05 2.442071e-06 3.029721e-06 2.227786e-05 6.499644e-05 1.603289e-05
-#> Ins Lac Lip09 Lip13a Lip13b Lip20 MM09
-#> 1 5.902957e-05 5.818739e-06 2.362973e-05 2.635501e-06 0 0 9.887556e-06
-#> MM12 MM14 MM17 MM20 NAA NAAG
-#> 1 6.546986e-06 2.59994e-05 2.245506e-05 9.207417e-05 5.981787e-05 1.556188e-05
-#> PCh PCr sIns Tau tNAA tCr tCho
-#> 1 0 2.101297e-05 6.508637e-06 0 7.537975e-05 6.121602e-05 1.603289e-05
+#> X Y Z Dynamic Coil X.CrCH2 Ala Asp Cr GABA
+#> 1 1 1 1 1 1 0 8.22892e-06 3.548336e-05 4.020306e-05 1.706754e-05
+#> Glc Gln GSH Glu GPC Ins
+#> 1 2.442092e-06 3.029741e-06 2.227786e-05 6.499646e-05 1.603289e-05 5.902959e-05
+#> Lac Lip09 Lip13a Lip13b Lip20 MM09 MM12
+#> 1 5.818736e-06 2.362972e-05 2.635508e-06 0 0 9.887563e-06 6.546986e-06
+#> MM14 MM17 MM20 NAA NAAG PCh
+#> 1 2.59994e-05 2.245507e-05 9.207419e-05 5.981787e-05 1.556187e-05 0
+#> PCr sIns Tau tNAA tCr tCho
+#> 1 2.101295e-05 6.50864e-06 0 7.537974e-05 6.121601e-05 1.603289e-05
#> Glx tLM09 tLM13 tLM20 X.CrCH2.sd Ala.sd
-#> 1 6.802616e-05 3.351728e-05 3.518188e-05 9.207417e-05 2.383751e-06 4.353306e-06
-#> Asp.sd Cr.sd GABA.sd Glc.sd Gln.sd GSH.sd
-#> 1 9.243625e-06 3.715176e-06 4.58008e-06 4.427045e-06 5.089143e-06 2.022836e-06
+#> 1 6.802621e-05 3.351728e-05 3.518189e-05 9.207419e-05 2.383751e-06 4.353306e-06
+#> Asp.sd Cr.sd GABA.sd Glc.sd Gln.sd GSH.sd
+#> 1 9.243627e-06 3.715174e-06 4.580084e-06 4.427046e-06 5.089144e-06 2.022837e-06
#> Glu.sd GPC.sd Ins.sd Lac.sd Lip09.sd Lip13a.sd
-#> 1 5.086888e-06 2.525936e-06 2.091039e-06 5.311855e-06 4.118786e-06 1.328562e-05
-#> Lip13b.sd Lip20.sd MM09.sd MM12.sd MM14.sd MM17.sd
-#> 1 6.477225e-06 7.510915e-06 3.827221e-06 4.597884e-06 7.234429e-06 3.810268e-06
+#> 1 5.086889e-06 2.525936e-06 2.091039e-06 5.311855e-06 4.118786e-06 1.328562e-05
+#> Lip13b.sd Lip20.sd MM09.sd MM12.sd MM14.sd MM17.sd
+#> 1 6.477225e-06 7.510916e-06 3.827221e-06 4.597884e-06 7.23443e-06 3.810268e-06
#> MM20.sd NAA.sd NAAG.sd PCh.sd PCr.sd sIns.sd
-#> 1 8.602464e-06 1.015226e-06 1.215672e-06 2.174697e-06 3.108037e-06 7.233855e-07
+#> 1 8.602465e-06 1.015226e-06 1.215672e-06 2.174696e-06 3.108035e-06 7.233856e-07
#> Tau.sd tNAA.sd tCr.sd tCho.sd Glx.sd tLM09.sd
#> 1 3.777984e-06 7.031059e-07 5.881706e-07 2.1135e-07 3.165045e-06 1.006532e-06
#> tLM13.sd tLM20.sd phase lw shift asym
-#> 1 1.572003e-06 3.018189e-06 11.15087 5.038937 -0.003427612 0.1764498
+#> 1 1.572003e-06 3.018189e-06 11.15086 5.038937 -0.003427612 0.1764497
#> res.deviance res.niter res.info
-#> 1 7.300317e-05 28 2
+#> 1 7.300318e-05 28 2
#> res.message bl_ed_pppm
#> 1 Relative error between `par' and the solution is at most `ptol'. 2.364083
#> max_bl_flex_used full_res fit_pts ppm_range SNR SRR FQN
-#> 1 FALSE 7.745302e-05 497 3.8 62.79191 51.44068 1.490027
+#> 1 FALSE 7.745304e-05 497 3.8 62.79191 51.44068 1.490027
#> tNAA_lw tCr_lw tCho_lw auto_bl_crit_7 auto_bl_crit_5.901
-#> 1 0.04565271 0.05199592 0.05438808 -8.904402 -8.947808
+#> 1 0.04565271 0.05199591 0.05438808 -8.904402 -8.947808
#> auto_bl_crit_4.942 auto_bl_crit_4.12 auto_bl_crit_3.425 auto_bl_crit_2.844
#> 1 -8.980941 -9.003463 -9.016574 -9.023969
#> auto_bl_crit_2.364 auto_bl_crit_1.969 auto_bl_crit_1.647 auto_bl_crit_1.384
-#> 1 -9.027876 -9.027566 -9.014311 -8.963288
+#> 1 -9.027876 -9.027566 -9.014311 -8.963287
#> auto_bl_crit_1.17 auto_bl_crit_0.997 auto_bl_crit_0.856 auto_bl_crit_0.743
-#> 1 -8.848748 -8.694785 -8.565993 -8.488417
+#> 1 -8.848747 -8.694785 -8.565992 -8.488416
#> auto_bl_crit_0.654 auto_bl_crit_0.593 auto_bl_crit_0.558 auto_bl_crit_0.54
-#> 1 -8.449875 -8.432815 -8.42565 -8.422663
+#> 1 -8.449875 -8.432814 -8.425649 -8.422661
#> auto_bl_crit_0.532 auto_bl_crit_0.529
-#> 1 -8.421408 -8.420877
+#> 1 -8.421407 -8.420876
Note that signal names appended with “.sd” are the CRLB estimates for
the uncertainty (standard deviation) in the metabolite quantity
estimate. e.g. to calculate the percentage s.d. for tNAA:
fit_res$res_tab$tNAA.sd / fit_res$res_tab$tNAA * 100
-#> [1] 0.9327517
+#> [1] 0.9327519
Spectral SNR:
fit_res$res_tab$SNR
@@ -264,39 +264,39 @@
+#> tCho 0.26190675
+#> Glx 1.11124857
+#> tLM09 0.54752476
+#> tLM13 0.57471713
+#> tLM20 1.50408672
Water reference scaling, AKA “absolute-quantification”
@@ -326,7 +326,7 @@ Water reference sca
fit_res_molar <- scale_amp_molar(fit_res, mrs_data_wref)
fit_res_molar$res_tab$tNAA
-#> [1] 6.817594
+#> [1] 6.817593
Note, while “absolute” units are attractive, a large number of
assumptions about metabolite and water relaxation rates are necessary to
arrive at these mM estimates. If you’re not confident at being able to
diff --git a/docs/articles/spant-intro_files/figure-html/unnamed-chunk-10-1.png b/docs/articles/spant-intro_files/figure-html/unnamed-chunk-10-1.png
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diff --git a/docs/articles/spant-metabolite-simulation.html b/docs/articles/spant-metabolite-simulation.html
index 5e773194..c8cd4f9e 100644
--- a/docs/articles/spant-metabolite-simulation.html
+++ b/docs/articles/spant-metabolite-simulation.html
@@ -40,7 +40,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/articles/spant-preprocessing.html b/docs/articles/spant-preprocessing.html
index 862bd260..97aaf90d 100644
--- a/docs/articles/spant-preprocessing.html
+++ b/docs/articles/spant-preprocessing.html
@@ -40,7 +40,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/articles/spant-preprocessing_files/figure-html/unnamed-chunk-10-1.png b/docs/articles/spant-preprocessing_files/figure-html/unnamed-chunk-10-1.png
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diff --git a/docs/authors.html b/docs/authors.html
index 3427e424..24b6ffc2 100644
--- a/docs/authors.html
+++ b/docs/authors.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/index.html b/docs/index.html
index 019483fb..482b5869 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -43,7 +43,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/news/index.html b/docs/news/index.html
index 552a9866..5a6ff111 100644
--- a/docs/news/index.html
+++ b/docs/news/index.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
@@ -73,11 +73,7 @@
Changelog
-
-
- Removed dependency on ragg package.
-
-
-
+
- Removed dependency on smoother package.
- Added functions for generating BOLD and trapezoidal response shapes.
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
index 84378738..b6abb4ba 100644
--- a/docs/pkgdown.yml
+++ b/docs/pkgdown.yml
@@ -7,7 +7,7 @@ articles:
spant-intro: spant-intro.html
spant-metabolite-simulation: spant-metabolite-simulation.html
spant-preprocessing: spant-preprocessing.html
-last_built: 2024-04-05T12:59Z
+last_built: 2024-03-22T09:17Z
urls:
reference: https://martin3141.github.io/spant/reference
article: https://martin3141.github.io/spant/articles
diff --git a/docs/reference/Arg.mrs_data.html b/docs/reference/Arg.mrs_data.html
index 968c8ddf..f4180778 100644
--- a/docs/reference/Arg.mrs_data.html
+++ b/docs/reference/Arg.mrs_data.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/Conj.mrs_data.html b/docs/reference/Conj.mrs_data.html
index 63f53278..9abcd68f 100644
--- a/docs/reference/Conj.mrs_data.html
+++ b/docs/reference/Conj.mrs_data.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/Im.mrs_data.html b/docs/reference/Im.mrs_data.html
index cd5c807c..564650cd 100644
--- a/docs/reference/Im.mrs_data.html
+++ b/docs/reference/Im.mrs_data.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/Imzap.html b/docs/reference/Imzap.html
index f934cdcf..ee76a58c 100644
--- a/docs/reference/Imzap.html
+++ b/docs/reference/Imzap.html
@@ -20,7 +20,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/Mod.mrs_data.html b/docs/reference/Mod.mrs_data.html
index e49abe48..1d8408af 100644
--- a/docs/reference/Mod.mrs_data.html
+++ b/docs/reference/Mod.mrs_data.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/Ncoils.html b/docs/reference/Ncoils.html
index 228a40f1..636a2549 100644
--- a/docs/reference/Ncoils.html
+++ b/docs/reference/Ncoils.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/Ndyns.html b/docs/reference/Ndyns.html
index c5daba20..aa40a9b0 100644
--- a/docs/reference/Ndyns.html
+++ b/docs/reference/Ndyns.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/Npts.html b/docs/reference/Npts.html
index 1dfb1260..e211d803 100644
--- a/docs/reference/Npts.html
+++ b/docs/reference/Npts.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/Nspec.html b/docs/reference/Nspec.html
index 6e4d4a1b..8208ce60 100644
--- a/docs/reference/Nspec.html
+++ b/docs/reference/Nspec.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/Ntrans.html b/docs/reference/Ntrans.html
index 90cb0e6c..fdb660f1 100644
--- a/docs/reference/Ntrans.html
+++ b/docs/reference/Ntrans.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/Nx.html b/docs/reference/Nx.html
index 67dd6343..cd24c187 100644
--- a/docs/reference/Nx.html
+++ b/docs/reference/Nx.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/Ny.html b/docs/reference/Ny.html
index b6f60385..ffd1e982 100644
--- a/docs/reference/Ny.html
+++ b/docs/reference/Ny.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/Nz.html b/docs/reference/Nz.html
index 28a7d6ee..8db995c6 100644
--- a/docs/reference/Nz.html
+++ b/docs/reference/Nz.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/Re.mrs_data.html b/docs/reference/Re.mrs_data.html
index 0b2e6c8b..c4025b27 100644
--- a/docs/reference/Re.mrs_data.html
+++ b/docs/reference/Re.mrs_data.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/abfit_opts.html b/docs/reference/abfit_opts.html
index 928f53af..7aacf7bf 100644
--- a/docs/reference/abfit_opts.html
+++ b/docs/reference/abfit_opts.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/abfit_opts_v1_9_0.html b/docs/reference/abfit_opts_v1_9_0.html
index 85ae0bd1..bf9868cf 100644
--- a/docs/reference/abfit_opts_v1_9_0.html
+++ b/docs/reference/abfit_opts_v1_9_0.html
@@ -20,7 +20,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/acquire.html b/docs/reference/acquire.html
index e8b23e77..00a7de03 100644
--- a/docs/reference/acquire.html
+++ b/docs/reference/acquire.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/add_noise.html b/docs/reference/add_noise.html
index ae9b8a4b..221fa676 100644
--- a/docs/reference/add_noise.html
+++ b/docs/reference/add_noise.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/align.html b/docs/reference/align.html
index 04c8cec8..5e2eb712 100644
--- a/docs/reference/align.html
+++ b/docs/reference/align.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/apodise_xy.html b/docs/reference/apodise_xy.html
index 0910f88a..b00d54c4 100644
--- a/docs/reference/apodise_xy.html
+++ b/docs/reference/apodise_xy.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/append_basis.html b/docs/reference/append_basis.html
index 8580c01f..a04bab57 100644
--- a/docs/reference/append_basis.html
+++ b/docs/reference/append_basis.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/append_coils.html b/docs/reference/append_coils.html
index 77b9df52..a5d0a401 100644
--- a/docs/reference/append_coils.html
+++ b/docs/reference/append_coils.html
@@ -20,7 +20,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/append_dyns.html b/docs/reference/append_dyns.html
index 50e8c7a6..abcaedf0 100644
--- a/docs/reference/append_dyns.html
+++ b/docs/reference/append_dyns.html
@@ -20,7 +20,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/apply_axes.html b/docs/reference/apply_axes.html
index 1b52f269..4c004071 100644
--- a/docs/reference/apply_axes.html
+++ b/docs/reference/apply_axes.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/apply_mrs.html b/docs/reference/apply_mrs.html
index 9cfc4a7e..bd3eb46c 100644
--- a/docs/reference/apply_mrs.html
+++ b/docs/reference/apply_mrs.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/apply_pulse.html b/docs/reference/apply_pulse.html
index ad656caf..15c6ecc1 100644
--- a/docs/reference/apply_pulse.html
+++ b/docs/reference/apply_pulse.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/array2mrs_data.html b/docs/reference/array2mrs_data.html
index 6a2dce42..2aec2925 100644
--- a/docs/reference/array2mrs_data.html
+++ b/docs/reference/array2mrs_data.html
@@ -20,7 +20,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/auto_phase.html b/docs/reference/auto_phase.html
index f44f22d7..3144f168 100644
--- a/docs/reference/auto_phase.html
+++ b/docs/reference/auto_phase.html
@@ -23,7 +23,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/back_extrap_ar.html b/docs/reference/back_extrap_ar.html
index 0c9a537a..8ccc8ed9 100644
--- a/docs/reference/back_extrap_ar.html
+++ b/docs/reference/back_extrap_ar.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/basis2mrs_data.html b/docs/reference/basis2mrs_data.html
index af35c04c..6d99be0b 100644
--- a/docs/reference/basis2mrs_data.html
+++ b/docs/reference/basis2mrs_data.html
@@ -20,7 +20,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/bbase.html b/docs/reference/bbase.html
index 3bf75b1f..74bb1c83 100644
--- a/docs/reference/bbase.html
+++ b/docs/reference/bbase.html
@@ -19,7 +19,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/bc_als.html b/docs/reference/bc_als.html
index 7a5f5558..25367e28 100644
--- a/docs/reference/bc_als.html
+++ b/docs/reference/bc_als.html
@@ -18,7 +18,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/bc_constant.html b/docs/reference/bc_constant.html
index ed8063ee..5899f9ee 100644
--- a/docs/reference/bc_constant.html
+++ b/docs/reference/bc_constant.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/bc_gauss.html b/docs/reference/bc_gauss.html
index a08e827c..dfacc7e7 100644
--- a/docs/reference/bc_gauss.html
+++ b/docs/reference/bc_gauss.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/bc_poly.html b/docs/reference/bc_poly.html
index cea8ade0..de3024a7 100644
--- a/docs/reference/bc_poly.html
+++ b/docs/reference/bc_poly.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/bc_spline.html b/docs/reference/bc_spline.html
index bd34a638..8421ae85 100644
--- a/docs/reference/bc_spline.html
+++ b/docs/reference/bc_spline.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/beta2lw.html b/docs/reference/beta2lw.html
index 6d6262eb..cdcf20a3 100644
--- a/docs/reference/beta2lw.html
+++ b/docs/reference/beta2lw.html
@@ -20,7 +20,7 @@
Spectroscopy Analysis Tools (spant)
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- 2.20.0
+ 2.19.0
diff --git a/docs/reference/sub_first_dyn.html b/docs/reference/sub_first_dyn.html
index e35d3558..9b317fe1 100644
--- a/docs/reference/sub_first_dyn.html
+++ b/docs/reference/sub_first_dyn.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/sub_mean_dyns.html b/docs/reference/sub_mean_dyns.html
index f9d4ba83..b04a6a79 100644
--- a/docs/reference/sub_mean_dyns.html
+++ b/docs/reference/sub_mean_dyns.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/sub_median_dyns.html b/docs/reference/sub_median_dyns.html
index 596f149d..3da93e56 100644
--- a/docs/reference/sub_median_dyns.html
+++ b/docs/reference/sub_median_dyns.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/sum_coils.html b/docs/reference/sum_coils.html
index 241696ee..75a6d223 100644
--- a/docs/reference/sum_coils.html
+++ b/docs/reference/sum_coils.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/sum_dyns.html b/docs/reference/sum_dyns.html
index 1d0ab94f..f2d21a9b 100644
--- a/docs/reference/sum_dyns.html
+++ b/docs/reference/sum_dyns.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/sum_mrs.html b/docs/reference/sum_mrs.html
index d4a1ef67..566017a0 100644
--- a/docs/reference/sum_mrs.html
+++ b/docs/reference/sum_mrs.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/sum_mrs_list.html b/docs/reference/sum_mrs_list.html
index 3b03a24e..e491bb76 100644
--- a/docs/reference/sum_mrs_list.html
+++ b/docs/reference/sum_mrs_list.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/svs_1h_brain_analysis.html b/docs/reference/svs_1h_brain_analysis.html
index 84e2082a..8ee6a7df 100644
--- a/docs/reference/svs_1h_brain_analysis.html
+++ b/docs/reference/svs_1h_brain_analysis.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/svs_1h_brain_analysis_dev.html b/docs/reference/svs_1h_brain_analysis_dev.html
index ac373d3b..4dac280a 100644
--- a/docs/reference/svs_1h_brain_analysis_dev.html
+++ b/docs/reference/svs_1h_brain_analysis_dev.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/svs_1h_brain_batch_analysis.html b/docs/reference/svs_1h_brain_batch_analysis.html
index cc82140d..03d4526f 100644
--- a/docs/reference/svs_1h_brain_batch_analysis.html
+++ b/docs/reference/svs_1h_brain_batch_analysis.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/td2fd.html b/docs/reference/td2fd.html
index 75eccc48..e4410d58 100644
--- a/docs/reference/td2fd.html
+++ b/docs/reference/td2fd.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/td_conv_filt.html b/docs/reference/td_conv_filt.html
index 8351d2e9..6b62c524 100644
--- a/docs/reference/td_conv_filt.html
+++ b/docs/reference/td_conv_filt.html
@@ -20,7 +20,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/tdsr.html b/docs/reference/tdsr.html
index 9944246a..c13e011c 100644
--- a/docs/reference/tdsr.html
+++ b/docs/reference/tdsr.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/te.html b/docs/reference/te.html
index eac2de07..75d814e0 100644
--- a/docs/reference/te.html
+++ b/docs/reference/te.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/tr.html b/docs/reference/tr.html
index 4bfc6959..8ae4a958 100644
--- a/docs/reference/tr.html
+++ b/docs/reference/tr.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/varpro_3_para_opts.html b/docs/reference/varpro_3_para_opts.html
index 878a766d..973cb139 100644
--- a/docs/reference/varpro_3_para_opts.html
+++ b/docs/reference/varpro_3_para_opts.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/varpro_basic_opts.html b/docs/reference/varpro_basic_opts.html
index 0e40e13e..cdbfc07f 100644
--- a/docs/reference/varpro_basic_opts.html
+++ b/docs/reference/varpro_basic_opts.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/varpro_opts.html b/docs/reference/varpro_opts.html
index 66a031b4..aacdd368 100644
--- a/docs/reference/varpro_opts.html
+++ b/docs/reference/varpro_opts.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/vec2mrs_data.html b/docs/reference/vec2mrs_data.html
index 5851f8f3..0380c7b7 100644
--- a/docs/reference/vec2mrs_data.html
+++ b/docs/reference/vec2mrs_data.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/write_basis.html b/docs/reference/write_basis.html
index d1a8bb4b..4e0ab9d2 100644
--- a/docs/reference/write_basis.html
+++ b/docs/reference/write_basis.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/write_basis_tqn.html b/docs/reference/write_basis_tqn.html
index d6fa904a..668c47d4 100644
--- a/docs/reference/write_basis_tqn.html
+++ b/docs/reference/write_basis_tqn.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/write_mrs.html b/docs/reference/write_mrs.html
index ab35a659..fb6b64ea 100644
--- a/docs/reference/write_mrs.html
+++ b/docs/reference/write_mrs.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/write_mrs_nifti.html b/docs/reference/write_mrs_nifti.html
index f613c765..0f584ec1 100644
--- a/docs/reference/write_mrs_nifti.html
+++ b/docs/reference/write_mrs_nifti.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/write_pulse_ascii.html b/docs/reference/write_pulse_ascii.html
index b2228ade..44422735 100644
--- a/docs/reference/write_pulse_ascii.html
+++ b/docs/reference/write_pulse_ascii.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/zero_fade_spec.html b/docs/reference/zero_fade_spec.html
index 8997cea1..fffbc8b0 100644
--- a/docs/reference/zero_fade_spec.html
+++ b/docs/reference/zero_fade_spec.html
@@ -20,7 +20,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/zero_higher_orders.html b/docs/reference/zero_higher_orders.html
index ee317695..bb19cc2d 100644
--- a/docs/reference/zero_higher_orders.html
+++ b/docs/reference/zero_higher_orders.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/zero_td_pts_end.html b/docs/reference/zero_td_pts_end.html
index 36de4619..c20e1f40 100644
--- a/docs/reference/zero_td_pts_end.html
+++ b/docs/reference/zero_td_pts_end.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/zf.html b/docs/reference/zf.html
index bfb992fa..793422ca 100644
--- a/docs/reference/zf.html
+++ b/docs/reference/zf.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/docs/reference/zf_xy.html b/docs/reference/zf_xy.html
index f578b9c8..207839da 100644
--- a/docs/reference/zf_xy.html
+++ b/docs/reference/zf_xy.html
@@ -17,7 +17,7 @@
Spectroscopy Analysis Tools (spant)
- 2.20.0
+ 2.19.0
diff --git a/vignettes/abfit-baseline-opts.Rmd b/vignettes/abfit-baseline-opts.Rmd
index f33b1314..4b041334 100644
--- a/vignettes/abfit-baseline-opts.Rmd
+++ b/vignettes/abfit-baseline-opts.Rmd
@@ -8,11 +8,13 @@ vignette: >
---
```{r, include = FALSE}
+library(ragg)
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.width = 6,
- fig.height = 5
+ fig.height = 5,
+ dev = "ragg_png"
)
```
diff --git a/vignettes/spant-basis-simulation.Rmd b/vignettes/spant-basis-simulation.Rmd
index 06bd450d..a8cd5c91 100644
--- a/vignettes/spant-basis-simulation.Rmd
+++ b/vignettes/spant-basis-simulation.Rmd
@@ -8,11 +8,13 @@ vignette: >
---
```{r, include = FALSE}
+library(ragg)
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.width = 6,
- fig.height = 5
+ fig.height = 5,
+ dev = "ragg_png"
)
```
diff --git a/vignettes/spant-intro.Rmd b/vignettes/spant-intro.Rmd
index da9a4d11..bf02abb6 100644
--- a/vignettes/spant-intro.Rmd
+++ b/vignettes/spant-intro.Rmd
@@ -8,11 +8,13 @@ vignette: >
---
```{r, include = FALSE}
+library(ragg)
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.width = 6,
- fig.height = 5
+ fig.height = 5,
+ dev = "ragg_png"
)
```
diff --git a/vignettes/spant-metabolite-simulation.Rmd b/vignettes/spant-metabolite-simulation.Rmd
index 8de951f8..c6b5bef8 100644
--- a/vignettes/spant-metabolite-simulation.Rmd
+++ b/vignettes/spant-metabolite-simulation.Rmd
@@ -8,11 +8,13 @@ vignette: >
---
```{r, include = FALSE}
+library(ragg)
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.width = 6,
- fig.height = 5
+ fig.height = 5,
+ dev = "ragg_png"
)
```
diff --git a/vignettes/spant-preprocessing.Rmd b/vignettes/spant-preprocessing.Rmd
index 00b1ae87..e810c4a5 100644
--- a/vignettes/spant-preprocessing.Rmd
+++ b/vignettes/spant-preprocessing.Rmd
@@ -8,11 +8,13 @@ vignette: >
---
```{r, include = FALSE}
+library(ragg)
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.width = 6,
- fig.height = 5
+ fig.height = 5,
+ dev = "ragg_png"
)
```