From 211cba7dcc1accbac0de283634c3f18eb9165495 Mon Sep 17 00:00:00 2001
From: adRn-s <salatino@omics.dev>
Date: Tue, 17 Sep 2024 15:42:45 +0200
Subject: [PATCH 1/2] load data installed without wrapper

---
 rmd/31_SCTransform.Rmd | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/rmd/31_SCTransform.Rmd b/rmd/31_SCTransform.Rmd
index 8af9711..83c76c7 100644
--- a/rmd/31_SCTransform.Rmd
+++ b/rmd/31_SCTransform.Rmd
@@ -37,8 +37,8 @@ packageVersion("Seurat")
 We're going to work with IFNB-Stimulated and Control human PBMCs and downsample the datasets for the purpose of the exercise.
 
 ```{r SeuratData}
-library(SeuratData)
-ifnb <- LoadData("ifnb")
+data(list = "ifnb", package = "ifnb.SeuratData")
+ifnb <- UpdateSeuratObject(ifnb)
 ifnb_sub <- subset(x = ifnb, downsample = 1000)
 table(ifnb_sub$stim)
 ifnb.list <- SplitObject(ifnb_sub, split.by = "stim")

From 064cecfd13636ea42843e673726607de58c529db Mon Sep 17 00:00:00 2001
From: adRn-s <salatino@omics.dev>
Date: Tue, 17 Sep 2024 15:43:29 +0200
Subject: [PATCH 2/2] skip continuum EULA or whatever was that

---
 configs/conda.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/configs/conda.yml b/configs/conda.yml
index 22d699b..0feedef 100644
--- a/configs/conda.yml
+++ b/configs/conda.yml
@@ -1,7 +1,6 @@
 channels:
   - conda-forge
   - bioconda
-  - defaults
 dependencies:
   - r-base=4.2.3
   - r-essentials