Merge branch 'develop' of https://github.com/mdaca/OHDSI-ArachneCommons…

… into develop

.github/workflows/main.yml

@@ -49,4 +49,33 @@ jobs:
             --region $AWS_REGION \
             --query authorizationToken \
             --output text) 
-          mvn deploy -s .m2/settings.xml -DaltDeploymentRepository=codeartifact::default::https://mdaca-201959883603.d.codeartifact.us-east-2.amazonaws.com/maven/OHDSI/
+          mvn clean install
+          package_list=$(aws codeartifact list-packages \
+          --domain mdaca \
+          --repository OHDSI \
+          --format maven \
+          --query "packages[].{namespace:namespace,package:package}" \
+          --output text)
+
+          # Iterate through each package in the list
+          echo "$package_list" | while read -r namespace package; do
+          # Only proceed if both namespace and package have values
+          if [[ -n "$namespace" && -n "$package" ]]; then
+            echo "Deleting package $package in namespace $namespace"
+            aws codeartifact delete-package \
+            --domain mdaca \
+            --repository OHDSI \
+            --format maven \
+            --namespace "$namespace" \
+            --package "$package"
+            else
+            echo "Skipping invalid entry: namespace=$namespace, package=$package"
+            fi
+            done
+          mvn clean deploy -s .m2/settings.xml -DaltDeploymentRepository=codeartifact::default::https://mdaca-201959883603.d.codeartifact.us-east-2.amazonaws.com/maven/OHDSI/
+      - name: Scan a specific path with Trivy
+        uses: aquasecurity/trivy-action@master
+        with:
+          scan-type: 'fs'
+          path: '/home/runner/work/OHDSI-ArachneCommons/OHDSI-ArachneCommons/target'  # Replace with the actual path you want to scan
+          severity: 'CRITICAL,HIGH'

README.md

@@ -1,10 +1,14 @@
 # ArachneCommons
-Commons module contains common code re-used between all Arachne components
-
-Build and install artifact to local Maven repository:
-```:shell 
-mvn clean install
-```
 
+The `ArachneCommons` module contains common code re-used between all Arachne components. It serves as a foundational library for various Arachne projects.
 
+## Building and Installing
 
+### To build and install the artifact to your local Maven repository:
+```sh
+mvn clean install
+```
+### To build and install the artifact to your remote Maven repository:
+```sh
+mvn clean deploy -s .m2/settings.xml -DaltDeploymentRepository=codeartifact::default::https://mdaca-201959883603.d.codeartifact.us-east-2.amazonaws.com/maven/OHDSI/
+```