From 3436fce12b055cf46899db1eeaae93d2a47945aa Mon Sep 17 00:00:00 2001 From: silask Date: Thu, 5 Oct 2023 11:43:03 +0200 Subject: [PATCH] add comment about musicc --- R/Analyze_genecatalog.Rmd | 3 +++ 1 file changed, 3 insertions(+) diff --git a/R/Analyze_genecatalog.Rmd b/R/Analyze_genecatalog.Rmd index 89d144b..0f5f1ec 100644 --- a/R/Analyze_genecatalog.Rmd +++ b/R/Analyze_genecatalog.Rmd @@ -206,6 +206,9 @@ data[1:10, 1:5] Normalze gene counts to gene counts per million, which is analogous to transcripts per million. Alternative ways to normalze would be to normalize to single copy genes. +Example the one from [MuSiCC](https://github.com/borenstein-lab/MUSiCC/blob/master/musicc/data/uscg_76_kegg_min_2313.lst) + +MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome. Ohad Manor and Elhanan Borenstein. Genome Biology ```{r }